Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09]
449 sequences; 39,397,682 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq1 143 4e-29
seq2 132 7e-26
>seq1
Length=2302571
Score = 143 bits (158), Expect = 4e-29
Identities = 336/501 (67%), Gaps = 21/501 (4%)
Strand=Plus/Plus
Query 125361 ATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCC 125420
|| ||||||||||| | |||| || || |||||| | ||| | ||||| | ||||
Sbjct 1624751 ATCCGTAAAAAGGCCGACTGGGCCATCCGCTGGATCCAAGACAAGGAGTCTAGCTTCGCC 1624810
Query 125421 GACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCC 125480
| || |||| || |||||||| || |||||||||||||| ||| || ||| ||
Sbjct 1624811 CAACGATTGGTTGCCTTCGCCGCTGTCGAGGGCATCTTCTTCAGTGGTGCATTCGCGTCC 1624870
Query 125481 ATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATA 125540
||||||||||||||||||||||| ||||||||||| || || | ||||| | |||
Sbjct 1624871 ATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGGCTTACCTTCTCAAACGAACTCATA 1624930
Query 125541 TCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGT 125600
|| || |||||||| | ||| ||||||| ||| | ||| | | ||| | | |
Sbjct 1624931 TCCCGTGACGAGGGTTTGCACACCGACTTTG-CATGC--CTGCTGC---ACTCT---CAT 1624981
Query 125601 CCCGAGTGCAGATCCAGCGATGAAAAGGTCATC---AACATTGTAACCGATGCCGTGAGG 125657
| | || ||| | ||| | ||| ||||| | || | ||||||||||| |
Sbjct 1624982 CTCAAGCAAAGAGCAAGCAAGCAAA---TCATCCAAGAAATCATCACCGATGCCGTCACC 1625038
Query 125658 ATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAG 125717
|| || ||||| || || || || | || ||| | | | |||||||||| ||
Sbjct 1625039 ATTGAGCAAGATTTCCTGACGGAGGCTCTGCCGTGCGCTCTTCTCGGCATGAACTCCACA 1625098
Query 125718 CTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTT---GATTGGC 125774
|| ||| | ||||| || || || || || || || || | | || ||
Sbjct 1625099 CTGATGAAGCAATACATCGAATTCGTTGCCGACCGCCTGTTGGTTGCTCTCGGGAATG-- 1625156
Query 125775 CGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGT 125834
||| | ||||| | |||||| |||||||| ||| | || || || | ||
Sbjct 1625157 -AAAAGGTGTACAAGACAGCGAATCCGTTTGATTTTATGGAGAATATCTCCCTGGGTGGC 1625215
Query 125835 AAGACCAACTTTTTCGAGAAG 125855
|||||||||||||| ||||||
Sbjct 1625216 AAGACCAACTTTTTTGAGAAG 1625236
Score = 134 bits (148), Expect = 2e-26
Identities = 204/288 (71%), Gaps = 2/288 (1%)
Strand=Plus/Plus
Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078
|| ||| |||||||||| |||||| |||| || || ||||| | ||||||| | || |||
Sbjct 1624343 ATATGGCAAATGTACAAGAAGGCTGAGGCTTCTTTCTGGACAGCCGAAGAGATAGACCTG 1624402
Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138
|||||||| || |||| ||| | | ||| ||| || ||| | || || ||
Sbjct 1624403 TCCAAGGATTTGCACGACTGGAATAATCGCCTGAACGACGATGAAAAGTATTTCATTTCT 1624462
Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACG 125197
||||| ||||| |||||||| | ||| ||||| ||||||||||| || || ||||| ||
Sbjct 1624463 CACATCTTGGCATTCTTTGCTGCCTCGGATGGCATCGTCAACGAAAACCTGGTTGA-GCG 1624521
Query 125198 ATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGAT 125257
||| ||| || |||| || | || || ||||| ||||| ||||||||
Sbjct 1624522 GTTCAGCGGCGAGGTGCAGGTTCCTGAAGCCCGTTGTTTCTACGGGTTCCAGATCATGAT 1624581
Query 125258 TGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACAT 125305
||||| | || || || | ||| ||| | |||| |||| ||| ||
Sbjct 1624582 GGAGAATATCCATTCCGAGACGTATTCTTTATTGATCGACACGTATAT 1624629
>seq2
Length=1075658
Score = 132 bits (146), Expect = 7e-26
Identities = 355/532 (67%), Gaps = 8/532 (2%)
Strand=Plus/Minus
Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATG-CAATGTCACG 96865
|| ||||||| | | | ||| | || || ||||| || | | ||| || || || |
Sbjct 442216 ACCAACGGCACCTCGAACGGCGTCGTTCCCATGCTGCGAGTCTTCAACAACACTGCCA-G 442158
Query 96866 ATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTG 96925
|||||| || |||||||| || || || ||||| | ||| ||||| |||| || ||
Sbjct 442157 ATACGTCGACCAAGGCGGCAACAAGCGACCGGGCGCCTTCGCCATCTACCTGGAGCCCTG 442098
Query 96926 GCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACG 96985
|||||| || || ||||| || | || | | || ||| ||| || || | ||
Sbjct 442097 GCACGCCGATGTCTTTGAATTCCTTGATCTCAGAAAGAACCACGGCAAGGAGGAAGTCCG 442038
Query 96986 AGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGA 97045
|| | ||| | || ||| || ||| | || || | ||||||||||| ||| | |
Sbjct 442037 CGCTCGCGACCTCTTCCTTGCGCTGTGGATCCCCGACCTCTTCATGAAGCGTGTCGAGAA 441978
Query 97046 CGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGG 97105
|||| |||||| ||| ||||||||| || | || || || |||| |||| ||
Sbjct 441977 GAATGGCGACTGGACCCTCATGTGCCCCAACGAATGCCCTGGGCTCGCCGACTGCTACGG 441918
Query 97106 CGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCG-ATACGTGAGACGAG 97164
||| ||||||||||| ||| ||||||| || ||||| || |||| |
Sbjct 441917 CGACGAGTTTGAGGCTTTGTATGAAAAGTACGAGCGCGAAGGCCGTGGCCGCAAGAC-AA 441859
Query 97165 TCGATGCACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCG 97223
|| || | |||| |||||| | | ||| | ||||||| |||||||| | ||
Sbjct 441858 TCCGCGC-CCAGAAGCTGTGGTACTCGATCCTCGAGGCTCAGACCGAGACTGGCAACCCC 441800
Query 97224 TACATTCTCTACAAGGATACCGTG-AATCGCAACAGCAACCAACGCCACTTGGGCACCAT 97282
| || || ||||||||| | || || | || |||||||| ||||||| |||||
Sbjct 441799 TTTATGCTGTACAAGGAT-CATTGCAACAGGAAGAGCAACCAGAAGAACTTGGGAACCAT 441741
Query 97283 CAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAG 97334
||||||| || ||||| || ||| | |||||| | | || ||||||
Sbjct 441740 TCGCAGCTCCAACCTCTGCACCGAGATTATCGAGTACTCGGCCCCCGACGAG 441689
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741055040805240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |