Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09] 449 sequences; 39,397,682 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq1 143 4e-29 seq2 132 7e-26 >seq1 Length=2302571 Score = 143 bits (158), Expect = 4e-29 Identities = 336/501 (67%), Gaps = 21/501 (4%) Strand=Plus/Plus Query 125361 ATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCC 125420 || ||||||||||| | |||| || || |||||| | ||| | ||||| | |||| Sbjct 1624751 ATCCGTAAAAAGGCCGACTGGGCCATCCGCTGGATCCAAGACAAGGAGTCTAGCTTCGCC 1624810 Query 125421 GACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCC 125480 | || |||| || |||||||| || |||||||||||||| ||| || ||| || Sbjct 1624811 CAACGATTGGTTGCCTTCGCCGCTGTCGAGGGCATCTTCTTCAGTGGTGCATTCGCGTCC 1624870 Query 125481 ATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATA 125540 ||||||||||||||||||||||| ||||||||||| || || | ||||| | ||| Sbjct 1624871 ATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGGCTTACCTTCTCAAACGAACTCATA 1624930 Query 125541 TCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGT 125600 || || |||||||| | ||| ||||||| ||| | ||| | | ||| | | | Sbjct 1624931 TCCCGTGACGAGGGTTTGCACACCGACTTTG-CATGC--CTGCTGC---ACTCT---CAT 1624981 Query 125601 CCCGAGTGCAGATCCAGCGATGAAAAGGTCATC---AACATTGTAACCGATGCCGTGAGG 125657 | | || ||| | ||| | ||| ||||| | || | ||||||||||| | Sbjct 1624982 CTCAAGCAAAGAGCAAGCAAGCAAA---TCATCCAAGAAATCATCACCGATGCCGTCACC 1625038 Query 125658 ATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAG 125717 || || ||||| || || || || | || ||| | | | |||||||||| || Sbjct 1625039 ATTGAGCAAGATTTCCTGACGGAGGCTCTGCCGTGCGCTCTTCTCGGCATGAACTCCACA 1625098 Query 125718 CTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTT---GATTGGC 125774 || ||| | ||||| || || || || || || || || | | || || Sbjct 1625099 CTGATGAAGCAATACATCGAATTCGTTGCCGACCGCCTGTTGGTTGCTCTCGGGAATG-- 1625156 Query 125775 CGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGT 125834 ||| | ||||| | |||||| |||||||| ||| | || || || | || Sbjct 1625157 -AAAAGGTGTACAAGACAGCGAATCCGTTTGATTTTATGGAGAATATCTCCCTGGGTGGC 1625215 Query 125835 AAGACCAACTTTTTCGAGAAG 125855 |||||||||||||| |||||| Sbjct 1625216 AAGACCAACTTTTTTGAGAAG 1625236 Score = 134 bits (148), Expect = 2e-26 Identities = 204/288 (71%), Gaps = 2/288 (1%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| |||||||||| |||||| |||| || || ||||| | ||||||| | || ||| Sbjct 1624343 ATATGGCAAATGTACAAGAAGGCTGAGGCTTCTTTCTGGACAGCCGAAGAGATAGACCTG 1624402 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 |||||||| || |||| ||| | | ||| ||| || ||| | || || || Sbjct 1624403 TCCAAGGATTTGCACGACTGGAATAATCGCCTGAACGACGATGAAAAGTATTTCATTTCT 1624462 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACG 125197 ||||| ||||| |||||||| | ||| ||||| ||||||||||| || || ||||| || Sbjct 1624463 CACATCTTGGCATTCTTTGCTGCCTCGGATGGCATCGTCAACGAAAACCTGGTTGA-GCG 1624521 Query 125198 ATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGAT 125257 ||| ||| || |||| || | || || ||||| ||||| |||||||| Sbjct 1624522 GTTCAGCGGCGAGGTGCAGGTTCCTGAAGCCCGTTGTTTCTACGGGTTCCAGATCATGAT 1624581 Query 125258 TGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACAT 125305 ||||| | || || || | ||| ||| | |||| |||| ||| || Sbjct 1624582 GGAGAATATCCATTCCGAGACGTATTCTTTATTGATCGACACGTATAT 1624629 >seq2 Length=1075658 Score = 132 bits (146), Expect = 7e-26 Identities = 355/532 (67%), Gaps = 8/532 (2%) Strand=Plus/Minus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATG-CAATGTCACG 96865 || ||||||| | | | ||| | || || ||||| || | | ||| || || || | Sbjct 442216 ACCAACGGCACCTCGAACGGCGTCGTTCCCATGCTGCGAGTCTTCAACAACACTGCCA-G 442158 Query 96866 ATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTG 96925 |||||| || |||||||| || || || ||||| | ||| ||||| |||| || || Sbjct 442157 ATACGTCGACCAAGGCGGCAACAAGCGACCGGGCGCCTTCGCCATCTACCTGGAGCCCTG 442098 Query 96926 GCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACG 96985 |||||| || || ||||| || | || | | || ||| ||| || || | || Sbjct 442097 GCACGCCGATGTCTTTGAATTCCTTGATCTCAGAAAGAACCACGGCAAGGAGGAAGTCCG 442038 Query 96986 AGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGA 97045 || | ||| | || ||| || ||| | || || | ||||||||||| ||| | | Sbjct 442037 CGCTCGCGACCTCTTCCTTGCGCTGTGGATCCCCGACCTCTTCATGAAGCGTGTCGAGAA 441978 Query 97046 CGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGG 97105 |||| |||||| ||| ||||||||| || | || || || |||| |||| || Sbjct 441977 GAATGGCGACTGGACCCTCATGTGCCCCAACGAATGCCCTGGGCTCGCCGACTGCTACGG 441918 Query 97106 CGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCG-ATACGTGAGACGAG 97164 ||| ||||||||||| ||| ||||||| || ||||| || |||| | Sbjct 441917 CGACGAGTTTGAGGCTTTGTATGAAAAGTACGAGCGCGAAGGCCGTGGCCGCAAGAC-AA 441859 Query 97165 TCGATGCACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCG 97223 || || | |||| |||||| | | ||| | ||||||| |||||||| | || Sbjct 441858 TCCGCGC-CCAGAAGCTGTGGTACTCGATCCTCGAGGCTCAGACCGAGACTGGCAACCCC 441800 Query 97224 TACATTCTCTACAAGGATACCGTG-AATCGCAACAGCAACCAACGCCACTTGGGCACCAT 97282 | || || ||||||||| | || || | || |||||||| ||||||| ||||| Sbjct 441799 TTTATGCTGTACAAGGAT-CATTGCAACAGGAAGAGCAACCAGAAGAACTTGGGAACCAT 441741 Query 97283 CAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAG 97334 ||||||| || ||||| || ||| | |||||| | | || |||||| Sbjct 441740 TCGCAGCTCCAACCTCTGCACCGAGATTATCGAGTACTCGGCCCCCGACGAG 441689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741055040805240