Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09] 449 sequences; 39,397,682 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq56 96.9 3e-15 >seq56 Length=194926 Score = 96.9 bits (106), Expect = 3e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| | ||| |||||||| || || || |||||||| ||| || | | ||||||| Sbjct 69607 AACGAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCTTC 69548 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | |||||||||||| | ||||| ||||| |||||| || || || || ||||| Sbjct 69547 GAGTTGTTTGCCAGCAAAGATCAAGCGTTGCTGGTCGGGCGGGATGCCCTCCTTGTCTTG 69488 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 ||||| ||| ||| | || ||||| ||| | || || || | ||| ||||| || Sbjct 69487 GATTTTCGCCTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCCAGGGTGATGGTCTT 69428 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || || || || || || || |||||| Sbjct 69427 CCCAGTGAGGGTCTTGACGAAGATCTGCATA 69397 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| | |||||||||||| || || || |||||||| ||| || | | | ||||| Sbjct 69379 AACCAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCATCTTC 69320 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | ||||| ||||| | ||||| || || |||||| || || || || ||||| Sbjct 69319 GAGCTGTTTACCAGCAAAGATCAAGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCTTG 69260 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 |||||| ||| ||| | || ||||| || | || || || | ||| ||||| || Sbjct 69259 AATTTTCGACTTGACATTGTCGATGGTGTCAGAAGACTCCACCTCGAGGGTGATGGTCTT 69200 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || || ||||| || |||||||| Sbjct 69199 TCCGGTGAGGGTCTTTACGAAGATTTGCAT 69170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362177218087509