Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09]
449 sequences; 39,397,682 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq56 116 9e-21
seq1 114 3e-20
>seq56
Length=194926
Score = 116 bits (128), Expect = 9e-21
Identities = 153/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407
|| || || || || || || || || ||||| || ||||| | ||| ||||| || ||
Sbjct 70065 AGCACCAGGTGCAACGTCGACTCCTTTTGAATGTTGTAGTCGGCTAGGGTTCTCCCATCC 70006
Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467
|| || || || |||||||| || || | ||| ||||||||||| || || || || ||
Sbjct 70005 TCAAGCTGCTTACCAGCAAAGATGAGTCGCTGCTGATCAGGAGGAATGCCCTCCTTGTCT 69946
Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527
||||| || | || ||||| || | |||||| | || ||||| || || || |||
Sbjct 69945 TGAATTTTCGACTTCACATTATCAATGGTATCAGACGACTCCACCTCGAGCGTGATGGTC 69886
Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|| || || || || || || || ||||||||
Sbjct 69885 TTCCCGGTCAGCGTCTTGACGAAAATCTGCAT 69854
>seq1
Length=2302571
Score = 114 bits (126), Expect = 3e-20
Identities = 201/288 (70%), Gaps = 5/288 (2%)
Strand=Plus/Plus
Query 268733 ATATGGAGGATGTACAAACAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTG 268792
|||||| |||||||| |||| | |||||||| ||||| | ||||| |||| |||
Sbjct 1624343 ATATGGCAAATGTACAAGAAGGCTGAGGCTTCTTTCTGGACAGCCGAAGAGATAGACCTG 1624402
Query 268793 TCTTATGACTTAATAGATTGGAAAAATTTAA--AACCA-GAAGAAAGAAGATTT-ATATC 268848
|| | || || || ||||| ||| ||| | || |||| | |||| || ||
Sbjct 1624403 TCCAAGGATTTGCACGACTGGAATAATCGCCTGAACGACGATGAAA-AGTATTTCATTTC 1624461
Query 268849 TTATATTCTTGCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAA 268908
| | || | || || ||||| | ||||| ||||| |||||||| || || |||
Sbjct 1624462 TCACATCTTGGCATTCTTTGCTGCCTCGGATGGCATCGTCAACGAAAACCTGGTTGAGCG 1624521
Query 268909 GTTCTGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTAT 268968
|||| | ||||| ||| ||||||||||| | ||||| ||||| |||||||| ||
Sbjct 1624522 GTTCAGCGGCGAGGTGCAGGTTCCTGAAGCCCGTTGTTTCTACGGGTTCCAGATCATGAT 1624581
Query 268969 AGAAAATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATAT 269016
|| ||||| ||||| |||| ||| | |||| || || || |||||
Sbjct 1624582 GGAGAATATCCATTCCGAGACGTATTCTTTATTGATCGACACGTATAT 1624629
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151391776220892
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |