Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09] 449 sequences; 39,397,682 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq56 116 9e-21 seq1 114 3e-20 >seq56 Length=194926 Score = 116 bits (128), Expect = 9e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || || || || || || || || ||||| || ||||| | ||| ||||| || || Sbjct 70065 AGCACCAGGTGCAACGTCGACTCCTTTTGAATGTTGTAGTCGGCTAGGGTTCTCCCATCC 70006 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || || |||||||| || || | ||| ||||||||||| || || || || || Sbjct 70005 TCAAGCTGCTTACCAGCAAAGATGAGTCGCTGCTGATCAGGAGGAATGCCCTCCTTGTCT 69946 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 ||||| || | || ||||| || | |||||| | || ||||| || || || ||| Sbjct 69945 TGAATTTTCGACTTCACATTATCAATGGTATCAGACGACTCCACCTCGAGCGTGATGGTC 69886 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || || || || || |||||||| Sbjct 69885 TTCCCGGTCAGCGTCTTGACGAAAATCTGCAT 69854 >seq1 Length=2302571 Score = 114 bits (126), Expect = 3e-20 Identities = 201/288 (70%), Gaps = 5/288 (2%) Strand=Plus/Plus Query 268733 ATATGGAGGATGTACAAACAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTG 268792 |||||| |||||||| |||| | |||||||| ||||| | ||||| |||| ||| Sbjct 1624343 ATATGGCAAATGTACAAGAAGGCTGAGGCTTCTTTCTGGACAGCCGAAGAGATAGACCTG 1624402 Query 268793 TCTTATGACTTAATAGATTGGAAAAATTTAA--AACCA-GAAGAAAGAAGATTT-ATATC 268848 || | || || || ||||| ||| ||| | || |||| | |||| || || Sbjct 1624403 TCCAAGGATTTGCACGACTGGAATAATCGCCTGAACGACGATGAAA-AGTATTTCATTTC 1624461 Query 268849 TTATATTCTTGCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAA 268908 | | || | || || ||||| | ||||| ||||| |||||||| || || ||| Sbjct 1624462 TCACATCTTGGCATTCTTTGCTGCCTCGGATGGCATCGTCAACGAAAACCTGGTTGAGCG 1624521 Query 268909 GTTCTGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTAT 268968 |||| | ||||| ||| ||||||||||| | ||||| ||||| |||||||| || Sbjct 1624522 GTTCAGCGGCGAGGTGCAGGTTCCTGAAGCCCGTTGTTTCTACGGGTTCCAGATCATGAT 1624581 Query 268969 AGAAAATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATAT 269016 || ||||| ||||| |||| ||| | |||| || || || ||||| Sbjct 1624582 GGAGAATATCCATTCCGAGACGTATTCTTTATTGATCGACACGTATAT 1624629 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151391776220892