Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09] 449 sequences; 39,397,682 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq23 104 2e-17 seq48 86.0 4e-12 >seq23 Length=560556 Score = 104 bits (114), Expect = 2e-17 Identities = 169/239 (71%), Gaps = 6/239 (3%) Strand=Plus/Minus Query 25738 AGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAA 25797 ||||| || |||||| | |||| |||||| | | | |||| ||||||||| || || Sbjct 480056 AGCTGGTCGACCCCCTTGCCCGTGTAGTCCGTCTTGGCGTCCACGTACTCTGCGCCAAAG 479997 Query 25798 TACCTCCACTGGAACCCGTACACCGGTCCTAGGTCTCCATCTTCCCTGTGCTCAAAGCCC 25857 | || ||||||||| ||||| || || || ||||| || || || | |||| | |||| Sbjct 479996 TGCCGCCACTGGAAGCCGTAGACGGGGCCGAGGTCGCCCTCCTCGCGGTGCGTCAGGCCC 479937 Query 25858 CTCTTATCCAAAAAGTCTCTGGAACCATTGGCGTCCCAGATCTTTACCCC--CTTCTCGG 25915 | || | || || | || || ||| ||||||| ||||| || || | || | | Sbjct 479936 AGGCTGTCGAGGAACTCGCGCGACCCGTTGCCGTCCCATATCTTGACGCCGACGTCGCTG 479877 Query 25916 AGAGCTCTTTGGAGTTTGTGGA-CCCTCTGACGAACCACAGCAGCTCCGCCGTGACGGC 25973 ||||| | ||||| ||| ||||| || ||||||||||||||| || |||||| Sbjct 479876 AGAGCCCG--GGAGTCGGTGTTGCCCTC-GATGAACCACAGCAGCTCGGCGACGACGGC 479821 >seq48 Length=244570 Score = 86.0 bits (94), Expect = 4e-12 Identities = 132/181 (73%), Gaps = 8/181 (4%) Strand=Plus/Minus Query 44368 CGTCAAGGTGAGGCTGAGGACCCCCAGGCACCCAGAGATGGGCGACAAGTTTGCGTCGT- 44426 ||||||||| || | |||| ||| | ||| |||| ||||||||||||||||| Sbjct 120410 CGTCAAGGTCCGGGTTCGGACAACCAAGATCCCGCAGATTGGCGACAAGTTTGCGTCTCG 120351 Query 44427 TCACGGCGCAAAAGGGGACA--TGCGGAGCCGTCCTGACCCAGGAGGACATGCCCTTCG- 44483 |||||| |||||||| || || | | ||| | | | |||||||||||||||| Sbjct 120350 TCACGGA-CAAAAGGGCACGATTGGTGTGACGTACCGGC--AGGAGGACATGCCCTTTAC 120294 Query 44484 ACAAAAACGGGGTGGTGCCCGACCTCATCATCAACCCCCACGCCTTTCCCTCCAGGATGA 44543 || || ||||| ||| ||| ||||||||||||| |||||| |||| || | |||| Sbjct 120293 ACGGGAA-GGGGTCACGCCAGACATCATCATCAACCCGCACGCCATTCCGTCGCGAATGA 120235 Query 44544 C 44544 | Sbjct 120234 C 120234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340135738703277