Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09] 449 sequences; 39,397,682 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq67 102 7e-17 seq56 98.7 8e-16 >seq67 Length=171618 Score = 102 bits (112), Expect = 7e-17 Identities = 163/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 || ||||||| | | ||| || || || ||||||||||| || |||||||| || ||| Sbjct 155687 CCACCGCGCAGGCGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGCC 155746 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 | || | ||||| |||||||| || | | || | |||||||| || || Sbjct 155747 AGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGGG 155806 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679 | | ||||||||| || || ||||| | | ||||| |||| ||||||| | Sbjct 155807 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 155866 Query 48680 TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTGTCT 48733 |||| || ||||| || || ||||| || || || |||||||||||| || || Sbjct 155867 TCGAGGGTGATGGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTTGCCT 155920 >seq56 Length=194926 Score = 98.7 bits (108), Expect = 8e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||||||||||||||| || || | || | | ||||| ||||||||||| | | Sbjct 70045 CTCCTTTTGAATGTTGTAGTCGGCTAGGGTTCTCCCATCCTCAAGCTGCTTACCAGCAAA 69986 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | ||||||||||| || | | |||||||| ||||||| ||| | | Sbjct 69985 GATGAGTCGCTGCTGATCAGGAGGAATGCCCTCCTTGTCTTGAATTTTCGACTTCACATT 69926 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | |||||||| | |||||| ||||| || ||||| || ||||| || || || || Sbjct 69925 ATCAATGGTATCAGACGACTCCACCTCGAGCGTGATGGTCTTCCCGGTCAGCGTCTTGAC 69866 Query 48715 AAAAATCTGCAT 48726 ||||||||||| Sbjct 69865 GAAAATCTGCAT 69854 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421248894834449