Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09] 449 sequences; 39,397,682 total letters Query= NC_005946.1 Length=105903 Score E Sequences producing significant alignments: (Bits) Value seq48 95.1 8e-15 >seq48 Length=244570 Score = 95.1 bits (104), Expect = 8e-15 Identities = 135/181 (75%), Gaps = 8/181 (4%) Strand=Plus/Plus Query 71419 GTCATCCTGGAGGGAAAGGCGTGGGGGTTGATGATGAGGTCGGGCACCACCCCGT-CCTT 71477 ||||| | || |||| |||||| ||||||||||||| ||| ||| ||||| | || | Sbjct 120234 GTCATTCGCGACGGAATGGCGTGCGGGTTGATGATGATGTCTGGCGTGACCCCTTCCCGT 120293 Query 71478 GTCGAAGGGCATGTCCTCCTG--GGTCAGGACAGCTCCGCATGTCCCCTTTTGCGCCGTG 71535 || ||||||||||||||||| ||| | | || | || || |||||||| ||||| Sbjct 120294 GT-AAAGGGCATGTCCTCCTGCCGGT-ACGTCA-CACCAATCGTGCCCTTTTG-TCCGTG 120349 Query 71536 A-ATGACGCAAACTTGTCGCCCATCTCTGGGTGCCTGGGGGTCCTCAGCCTCACCTTGAC 71594 | ||||||||||||||||| |||| ||| | ||| |||| | || |||||||| Sbjct 120350 ACGAGACGCAAACTTGTCGCCAATCTGCGGGATCTTGGTTGTCCGAACCCGGACCTTGAC 120409 Query 71595 G 71595 | Sbjct 120410 G 120410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338762946215496