Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09] 449 sequences; 39,397,682 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq4 185 1e-42 seq64 145 1e-30 >seq4 Length=987676 Score = 185 bits (204), Expect = 1e-42 Identities = 204/269 (76%), Gaps = 2/269 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| ||| ||| || || |||||||| || ||||||||||| |||| Sbjct 561419 CGCCAAGCGTCACCGCAAGAT-TCTCCGCGACAACATCCAGGGCATCACCAAGCCTGCTA 561477 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| ||||| || |||||||| || ||||||||| | |||| || |||| ||||| | Sbjct 561478 TCCGACGTCTCGCCCGTCGTGGCGGTGTCAAGCGTATTTCTGCCATGATCTACGAAGAAA 561537 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 ||| |||| | |||| |||||| || || |||| ||||| || ||| || | Sbjct 561538 CCCGTACTGTTCTCAAGACATTCCTCGAGGGTGTCATCCGAGATGCCGTCACCTACACTG 561597 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||||||||| || ||||| ||||||| || |||| || |||| Sbjct 561598 AGCACGCCAAGCGCAAGACTGTCACGTCGCTGGATGTCGTCTACGCCCTGAAGCGACAAG 561657 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | | || || ||||| ||||| Sbjct 561658 GCCGCACTCTGTACGGGTTTGGCGGTTAA 561686 >seq64 Length=174858 Score = 145 bits (160), Expect = 1e-30 Identities = 197/272 (72%), Gaps = 2/272 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| |||| | |||| ||||| || ||||| || |||||||| || || || Sbjct 138326 GCCAAGCGTCACCGCAAAA-TCTTACGAGACAATATCCAGGGCATCACCAAACCTGCAAT 138384 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||| ||||||||||| || ||||||||| |||||| || | || ||||| | Sbjct 138385 TCGTCGTCTTGCTCGTCGTGGCGGGGTCAAGCGTATCTCTGCCATGATTTACGAAGAAAC 138444 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || ||| | |||| |||||| | || || | |||||| || ||||| || Sbjct 138445 CCGCACTGTACTTAAGACTTTCCTCGAAGGTGTCATTCGAGATGCTGTCACATATACAGA 138504 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| || |||||||| ||||| || | ||| | || |||||||| || | || || Sbjct 138505 ACACGCCAAGCGTAAGACAGTCACGTCGCTTGATGTTGTGTATGCATTAAAGAGGCAGGG 138564 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTT 16703 | | | ||||||| ||||| ||| || || Sbjct 138565 CAGAACTCTTTATGGGTTTGGTGGTTGATGTT 138596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074789476157