Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09]
449 sequences; 39,397,682 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq4 185 1e-42
seq64 145 1e-30
>seq4
Length=987676
Score = 185 bits (204), Expect = 1e-42
Identities = 204/269 (76%), Gaps = 2/269 (1%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490
||| |||||||| |||| ||| ||| || || |||||||| || ||||||||||| ||||
Sbjct 561419 CGCCAAGCGTCACCGCAAGAT-TCTCCGCGACAACATCCAGGGCATCACCAAGCCTGCTA 561477
Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550
|||| ||||| || |||||||| || ||||||||| | |||| || |||| ||||| |
Sbjct 561478 TCCGACGTCTCGCCCGTCGTGGCGGTGTCAAGCGTATTTCTGCCATGATCTACGAAGAAA 561537
Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610
||| |||| | |||| |||||| || || |||| ||||| || ||| || |
Sbjct 561538 CCCGTACTGTTCTCAAGACATTCCTCGAGGGTGTCATCCGAGATGCCGTCACCTACACTG 561597
Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670
||||||| || || ||||||||||| || ||||| ||||||| || |||| || ||||
Sbjct 561598 AGCACGCCAAGCGCAAGACTGTCACGTCGCTGGATGTCGTCTACGCCCTGAAGCGACAAG 561657
Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAA 16699
|||| | | || || ||||| |||||
Sbjct 561658 GCCGCACTCTGTACGGGTTTGGCGGTTAA 561686
>seq64
Length=174858
Score = 145 bits (160), Expect = 1e-30
Identities = 197/272 (72%), Gaps = 2/272 (1%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|| |||||||| |||| | |||| ||||| || ||||| || |||||||| || || ||
Sbjct 138326 GCCAAGCGTCACCGCAAAA-TCTTACGAGACAATATCCAGGGCATCACCAAACCTGCAAT 138384
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
|||||||| ||||||||||| || ||||||||| |||||| || | || ||||| |
Sbjct 138385 TCGTCGTCTTGCTCGTCGTGGCGGGGTCAAGCGTATCTCTGCCATGATTTACGAAGAAAC 138444
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| ||| | |||| |||||| | || || | |||||| || ||||| ||
Sbjct 138445 CCGCACTGTACTTAAGACTTTCCTCGAAGGTGTCATTCGAGATGCTGTCACATATACAGA 138504
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
||||| || |||||||| ||||| || | ||| | || |||||||| || | || ||
Sbjct 138505 ACACGCCAAGCGTAAGACAGTCACGTCGCTTGATGTTGTGTATGCATTAAAGAGGCAGGG 138564
Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTT 16703
| | | ||||||| ||||| ||| || ||
Sbjct 138565 CAGAACTCTTTATGGGTTTGGTGGTTGATGTT 138596
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79074789476157
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |