Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09]
449 sequences; 39,397,682 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq402 136 3e-27
seq397 136 3e-27
seq266 136 3e-27
seq198 136 3e-27
seq137 136 3e-27
seq136 136 3e-27
seq37 136 3e-27
seq135 105 4e-18
seq345 100 2e-16
seq67 86.0 4e-12
seq80 82.4 5e-11
>seq402
Length=2405
Score = 136 bits (150), Expect = 3e-27
Identities = 87/95 (92%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||| ||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1239 AAGCCCATTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 1180
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 1179 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 1145
>seq397
Length=2477
Score = 136 bits (150), Expect = 3e-27
Identities = 87/95 (92%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||| ||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1265 AAGCCCATTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 1324
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 1325 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 1359
>seq266
Length=5848
Score = 136 bits (150), Expect = 3e-27
Identities = 87/95 (92%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||| ||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 4688 AAGCCCATTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 4629
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 4628 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 4594
>seq198
Length=9641
Score = 136 bits (150), Expect = 3e-27
Identities = 87/95 (92%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||| ||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1799 AAGCCCATTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGGGGGAATCTCGT 1740
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 1739 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 1705
>seq137
Length=18433
Score = 136 bits (150), Expect = 3e-27
Identities = 87/95 (92%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||| ||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 7239 AAGCCCATTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 7298
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 7299 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 7333
Score = 136 bits (150), Expect = 3e-27
Identities = 87/95 (92%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||| ||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 9959 AAGCCCATTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 10018
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 10019 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 10053
Score = 111 bits (122), Expect = 1e-19
Identities = 72/79 (91%), Gaps = 5/79 (6%)
Strand=Plus/Plus
Query 25918 CTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAATCCTTTCATGCGC 25972
|||||||||||||||||||||||||||| || |||||||||||||| |||||||||
Sbjct 5098 CTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGC 5157
Query 25973 GTCACTAATTAGATGACGA 25991
|||||||||||||||||||
Sbjct 5158 GTCACTAATTAGATGACGA 5176
Score = 96.9 bits (106), Expect = 2e-15
Identities = 64/71 (90%), Gaps = 5/71 (7%)
Strand=Plus/Plus
Query 25926 TCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAATCCTTTCATGCGCGTCACTAA 25980
|||||||||||||||||||| || |||||||||||||| |||||||||||||||||
Sbjct 11593 TCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAA 11652
Query 25981 TTAGATGACGA 25991
|||||||||||
Sbjct 11653 TTAGATGACGA 11663
Score = 82.4 bits (90), Expect = 5e-11
Identities = 56/63 (89%), Gaps = 5/63 (8%)
Strand=Plus/Plus
Query 25934 TAGTAGATAGGG-----GGTAATCTCGTTAATCCTTTCATGCGCGTCACTAATTAGATGA 25988
|||||||||||| || |||||||||||||| |||||||||||||||||||||||||
Sbjct 481 TAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGA 540
Query 25989 CGA 25991
|||
Sbjct 541 CGA 543
>seq136
Length=18941
Score = 136 bits (150), Expect = 3e-27
Identities = 87/95 (92%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||| ||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 4235 AAGCCCATTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 4294
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 4295 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 4329
>seq37
Length=341418
Score = 136 bits (150), Expect = 3e-27
Identities = 87/95 (92%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 287847 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGATAGTGGGAATCTCGT 287788
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| || |||||||||||||||||||||||||
Sbjct 287787 TAATCCATTTATGCGCGTCACTAATTAGATGACGA 287753
>seq135
Length=19661
Score = 105 bits (116), Expect = 4e-18
Identities = 70/78 (90%), Gaps = 5/78 (6%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||| ||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 3606 AAGCCCATTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 3665
Query 25957 TAATCCTTTCATGCGCGT 25974
|||||| |||||||||||
Sbjct 3666 TAATCCATTCATGCGCGT 3683
Score = 82.4 bits (90), Expect = 5e-11
Identities = 56/63 (89%), Gaps = 5/63 (8%)
Strand=Plus/Plus
Query 25934 TAGTAGATAGGG-----GGTAATCTCGTTAATCCTTTCATGCGCGTCACTAATTAGATGA 25988
|||||||||||| || |||||||||||||| |||||||||||||||||||||||||
Sbjct 9025 TAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGA 9084
Query 25989 CGA 25991
|||
Sbjct 9085 CGA 9087
>seq345
Length=3479
Score = 100 bits (110), Expect = 2e-16
Identities = 66/73 (90%), Gaps = 5/73 (7%)
Strand=Plus/Minus
Query 25924 TTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAATCCTTTCATGCGCGTCACT 25978
|||||||||||||||||||||| || |||||||||||||| |||||||||||||||
Sbjct 639 TTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACT 580
Query 25979 AATTAGATGACGA 25991
|||||||||||||
Sbjct 579 AATTAGATGACGA 567
>seq67
Length=171618
Score = 86.0 bits (94), Expect = 4e-12
Identities = 157/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
||||| | || |||| |||||| || || ||||||||||| || || ||||| || | |
Sbjct 155687 CCACCGCGCAGGCGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGCC 155746
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210
| || | || || | || || || ||||| || || || || || |||| ||||
Sbjct 155747 AGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGGG 155806
Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270
| ||| || |||||| || || ||| ||||| | || || || | || ||
Sbjct 155807 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 155866
Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320
|| | || || || || ||||| | ||| || ||||| |||||||| ||
Sbjct 155867 TCGAGGGTGATGGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTT 155916
>seq80
Length=128910
Score = 82.4 bits (90), Expect = 5e-11
Identities = 56/63 (89%), Gaps = 5/63 (8%)
Strand=Plus/Plus
Query 25934 TAGTAGATAGGG-----GGTAATCTCGTTAATCCTTTCATGCGCGTCACTAATTAGATGA 25988
|||||||||||| || |||||||||||||| |||||||||||||||||||||||||
Sbjct 13109 TAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGA 13168
Query 25989 CGA 25991
|||
Sbjct 13169 CGA 13171
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334945367106119
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |