Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09] 449 sequences; 39,397,682 total letters Query= NC_008187.1 Length=191100 Score E Sequences producing significant alignments: (Bits) Value seq3 114 2e-20 seq48 91.5 2e-13 >seq3 Length=991023 Score = 114 bits (126), Expect = 2e-20 Identities = 205/297 (69%), Gaps = 12/297 (4%) Strand=Plus/Plus Query 137820 GCCGATGAGCGAGTCTTGGACAATGGCCACGTTTGGCTTGCCGTT---TTGCACCGACAT 137876 |||| ||||||||| || || ||| ||| || |||||| |||| ||||| Sbjct 313144 GCCGGCGAGCGAGTCCTGCACGATGCCCATCAGGGG---GCCGTTCTTTTGCGGCGACAC 313200 Query 137877 GATGCACTTGCTGG---CGCAGCTCAGCTCTTTCAGCTCGGCAATGGCCTCGTACGACTG 137933 ||| ||| ||| || || |||||| || | |||||| | ||| | ||| Sbjct 313201 AATG---TTGTTGGGCACGAGGCACAGCTCCTTGACCTCGGCGCGCGTCTCCTCGCTCTG 313257 Query 137934 CGGCACGTGAATGTTCATCTCGTCGCCGTCAAAGTCGCAGTTGAAGGGCTTCGTTATGGC 137993 |||||||| | |||||||||||| |||||||||||| |||| ||||| ||| | | Sbjct 313258 GGGCACGTGCAGGTTCATCTCGTCTCCGTCAAAGTCGGCGTTGTAGGGCGACGTGACCGA 313317 Query 137994 CAGGTTGATTTTGAGCGTCTTGACTGGTTTGATGACCACCTTAAAGGCCATCATGGACGC 138053 |||||| | | |||| | || ||| | || | ||||||||||| | Sbjct 313318 CAGGTTCAGGCGAAACGTCGAGTACGGCATGACGCGGACGCGGTGGCCCATCATGGACTC 313377 Query 138054 CTTGTGCAGCGTCGGTTGCCGGTTGAGCAGCACGTAGTCGCCGTCCATCAGCTGCCG 138110 ||||||||||| || |||||||||| | | |||||||||||||||||| ||||| Sbjct 313378 CTTGTGCAGCGAGGGCTGCCGGTTGAAGATGATGTAGTCGCCGTCCATCAGGTGCCG 313434 >seq48 Length=244570 Score = 91.5 bits (100), Expect = 2e-13 Identities = 111/150 (74%), Gaps = 1/150 (1%) Strand=Plus/Minus Query 15050 CCCG-AGATTGGCGACAAGTTTTGCTCTGGTATGGCGCAAAAGGGCACGTGCGGCATGAT 15108 |||| ||||||||||||||||| ||| || | |||||||||||| || ||| Sbjct 120380 CCCGCAGATTGGCGACAAGTTTGCGTCTCGTCACGGACAAAAGGGCACGATTGGTGTGAC 120321 Query 15109 TTTCCCCCAGGAAGACATGCCCTTTACCGCGTCAGGCATGACGCCCGACATTATCATCAA 15168 | || ||||| |||||||||||||| | ||| | ||||| ||||| |||||||| Sbjct 120320 GTACCGGCAGGAGGACATGCCCTTTACACGGGAAGGGGTCACGCCAGACATCATCATCAA 120261 Query 15169 CCCCAACTGCATCCCGTCCCGCATGACCAT 15198 ||| || ||| ||||| || ||||| || Sbjct 120260 CCCGCACGCCATTCCGTCGCGAATGACAAT 120231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611388568562400