Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09]
449 sequences; 39,397,682 total letters
Query= NC_008187.1
Length=191100
Score E
Sequences producing significant alignments: (Bits) Value
seq3 114 2e-20
seq48 91.5 2e-13
>seq3
Length=991023
Score = 114 bits (126), Expect = 2e-20
Identities = 205/297 (69%), Gaps = 12/297 (4%)
Strand=Plus/Plus
Query 137820 GCCGATGAGCGAGTCTTGGACAATGGCCACGTTTGGCTTGCCGTT---TTGCACCGACAT 137876
|||| ||||||||| || || ||| ||| || |||||| |||| |||||
Sbjct 313144 GCCGGCGAGCGAGTCCTGCACGATGCCCATCAGGGG---GCCGTTCTTTTGCGGCGACAC 313200
Query 137877 GATGCACTTGCTGG---CGCAGCTCAGCTCTTTCAGCTCGGCAATGGCCTCGTACGACTG 137933
||| ||| ||| || || |||||| || | |||||| | ||| | |||
Sbjct 313201 AATG---TTGTTGGGCACGAGGCACAGCTCCTTGACCTCGGCGCGCGTCTCCTCGCTCTG 313257
Query 137934 CGGCACGTGAATGTTCATCTCGTCGCCGTCAAAGTCGCAGTTGAAGGGCTTCGTTATGGC 137993
|||||||| | |||||||||||| |||||||||||| |||| ||||| ||| | |
Sbjct 313258 GGGCACGTGCAGGTTCATCTCGTCTCCGTCAAAGTCGGCGTTGTAGGGCGACGTGACCGA 313317
Query 137994 CAGGTTGATTTTGAGCGTCTTGACTGGTTTGATGACCACCTTAAAGGCCATCATGGACGC 138053
|||||| | | |||| | || ||| | || | ||||||||||| |
Sbjct 313318 CAGGTTCAGGCGAAACGTCGAGTACGGCATGACGCGGACGCGGTGGCCCATCATGGACTC 313377
Query 138054 CTTGTGCAGCGTCGGTTGCCGGTTGAGCAGCACGTAGTCGCCGTCCATCAGCTGCCG 138110
||||||||||| || |||||||||| | | |||||||||||||||||| |||||
Sbjct 313378 CTTGTGCAGCGAGGGCTGCCGGTTGAAGATGATGTAGTCGCCGTCCATCAGGTGCCG 313434
>seq48
Length=244570
Score = 91.5 bits (100), Expect = 2e-13
Identities = 111/150 (74%), Gaps = 1/150 (1%)
Strand=Plus/Minus
Query 15050 CCCG-AGATTGGCGACAAGTTTTGCTCTGGTATGGCGCAAAAGGGCACGTGCGGCATGAT 15108
|||| ||||||||||||||||| ||| || | |||||||||||| || |||
Sbjct 120380 CCCGCAGATTGGCGACAAGTTTGCGTCTCGTCACGGACAAAAGGGCACGATTGGTGTGAC 120321
Query 15109 TTTCCCCCAGGAAGACATGCCCTTTACCGCGTCAGGCATGACGCCCGACATTATCATCAA 15168
| || ||||| |||||||||||||| | ||| | ||||| ||||| ||||||||
Sbjct 120320 GTACCGGCAGGAGGACATGCCCTTTACACGGGAAGGGGTCACGCCAGACATCATCATCAA 120261
Query 15169 CCCCAACTGCATCCCGTCCCGCATGACCAT 15198
||| || ||| ||||| || ||||| ||
Sbjct 120260 CCCGCACGCCATTCCGTCGCGAATGACAAT 120231
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 611388568562400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |