Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09]
449 sequences; 39,397,682 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq56 120 3e-22
>seq56
Length=194926
Score = 120 bits (132), Expect = 3e-22
Identities = 156/213 (73%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| ||||| ||||| |||| || ||| | ||||| | ||||| ||||||||
Sbjct 69626 ATGCAAATCTTTGTCAAGACACTGACGGGAAAAACAATCACGCTGGAAGTTGAGTCGTCA 69685
Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
||||| || || | ||| | || | ||| ||||| ||||||||||| || |||||
Sbjct 69686 GACACCATTGACAACGTCAAGTCGAAGATTCAA-GACAAGGAAGGGATTCCCCCCGACCA 69744
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
||||| |||| ||||||||||| || | || || | || || ||| ||| |||||
Sbjct 69745 GCAGCGACTTATCTTTGCCGGCAAGCAGCTCGAGGACGGACGAACATTGGCCGACTACAA 69804
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| || || || ||||| || || | |||||
Sbjct 69805 CATCCAGAAGGAGTCCACCCTGCACCTGGTGCT 69837
Score = 107 bits (118), Expect = 2e-18
Identities = 153/213 (72%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || ||||| ||||||| || ||||||| |||| ||||||||||||
Sbjct 69854 ATGCAGATTTTCGTCAAGACGCTGACCGGGAAGACCATCACGCTCGAGGTGGAGTCGTCT 69913
Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
|| || || || ||||| | |||| ||| ||||| || || ||||| ||||| ||
Sbjct 69914 GATACCATTGATAATGTGAAGTCGAAAATTCA-AGACAAGGAGGGCATTCCTCCTGATCA 69972
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
||||| | || ||||| || || || | || |||| | || | | ||| |||||
Sbjct 69973 GCAGCGACTCATCTTTGCTGGTAAGCAGCTTGAGGATGGGAGAACCCTAGCCGACTACAA 70032
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|||||||| || || ||| | || | |||||
Sbjct 70033 CATTCAAAAGGAGTCGACGTTGCACCTGGTGCT 70065
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433325628747935
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |