Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09]
449 sequences; 39,397,682 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq1 141 1e-28
>seq1
Length=2302571
Score = 141 bits (156), Expect = 1e-28
Identities = 233/333 (70%), Gaps = 5/333 (2%)
Strand=Plus/Minus
Query 93317 GTTTCGATAGCGTTAAATAGGTAATCTCGCT-CGTCCGAATCTCGTATGTATGTATCGAT 93375
||||| || || || || ||||||| ||||| || | || | || || || |||||
Sbjct 1624674 GTTTCAATGGCATTGAAGAGGTAATTTCGCTGCGCGTGCTCCTTG-ATATACGTGTCGAT 1624616
Query 93376 TAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACA 93435
|| | ||||||| | || ||||||| ||||||||| || ||||| |||||||||||
Sbjct 1624615 CAATAAAGAATACGTCTCGGAATGGATATTCTCCATCATGATCTGGAACCCGTAGAAACA 1624556
Query 93436 TCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTAT 93495
| ||||| | | |||||| || || | ||| || || ||||| ||||| ||
Sbjct 1624555 ACGGGCTTCAGGAACCTGCACCTCGCCGCTGAACCGCTCAACCAGGTTTTCGTTGACGAT 1624496
Query 93496 ACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTT 93555
||||| || || ||||| || ||||| || || || |||| || ||||| || ||
Sbjct 1624495 GCCATCCGAGGCAGCAAAGAATGCCAAGATGTGAGAAATGAAATACTTTTCATCGTCGTT 1624436
Query 93556 AA---GCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAA 93612
| | |||| ||| ||| | ||| || || || || | |||||| | ||||| ||
Sbjct 1624435 CAGGCGATTATTCCAGTCGTGCAAATCCTTGGACAGGTCTATCTCTTCGGCTGTCCAGAA 1624376
Query 93613 CGATGCTTCTGCTTTTTTGTACATATCCCATAT 93645
|| || || || || |||||||| | ||||||
Sbjct 1624375 AGAAGCCTCAGCCTTCTTGTACATTTGCCATAT 1624343
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556857674618760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |