Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09] 449 sequences; 39,397,682 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq1 141 1e-28 >seq1 Length=2302571 Score = 141 bits (156), Expect = 1e-28 Identities = 233/333 (70%), Gaps = 5/333 (2%) Strand=Plus/Minus Query 93317 GTTTCGATAGCGTTAAATAGGTAATCTCGCT-CGTCCGAATCTCGTATGTATGTATCGAT 93375 ||||| || || || || ||||||| ||||| || | || | || || || ||||| Sbjct 1624674 GTTTCAATGGCATTGAAGAGGTAATTTCGCTGCGCGTGCTCCTTG-ATATACGTGTCGAT 1624616 Query 93376 TAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACA 93435 || | ||||||| | || ||||||| ||||||||| || ||||| ||||||||||| Sbjct 1624615 CAATAAAGAATACGTCTCGGAATGGATATTCTCCATCATGATCTGGAACCCGTAGAAACA 1624556 Query 93436 TCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTAT 93495 | ||||| | | |||||| || || | ||| || || ||||| ||||| || Sbjct 1624555 ACGGGCTTCAGGAACCTGCACCTCGCCGCTGAACCGCTCAACCAGGTTTTCGTTGACGAT 1624496 Query 93496 ACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTT 93555 ||||| || || ||||| || ||||| || || || |||| || ||||| || || Sbjct 1624495 GCCATCCGAGGCAGCAAAGAATGCCAAGATGTGAGAAATGAAATACTTTTCATCGTCGTT 1624436 Query 93556 AA---GCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAA 93612 | | |||| ||| ||| | ||| || || || || | |||||| | ||||| || Sbjct 1624435 CAGGCGATTATTCCAGTCGTGCAAATCCTTGGACAGGTCTATCTCTTCGGCTGTCCAGAA 1624376 Query 93613 CGATGCTTCTGCTTTTTTGTACATATCCCATAT 93645 || || || || || |||||||| | |||||| Sbjct 1624375 AGAAGCCTCAGCCTTCTTGTACATTTGCCATAT 1624343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556857674618760