Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09] 449 sequences; 39,397,682 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq56 136 3e-27 seq67 122 7e-23 seq2 105 6e-18 seq13 95.1 1e-14 >seq56 Length=194926 Score = 136 bits (150), Expect = 3e-27 Identities = 174/240 (73%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 22207 ACATTTGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAA 22266 ||||| | || |||||||| || || || || | ||||| || || |||| || || Sbjct 69158 ACATTGGCAACCATGCAAATCTTCGTAAAGACCCTCACCGGAAAGACCATCACCCTCGAG 69217 Query 22267 GTGGAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATT 22326 ||||| | | || ||| | ||| || |||| |||||||||||||||||||| || Sbjct 69218 GTGGAGTCTTCTGACACCATCGACAATGTCAAGTCGAAAATTCAAGACAAGGAGGGCATC 69277 Query 22327 CCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTC 22386 || ||||| || || || | || ||||| || |||||| | || ||| ||||||| | Sbjct 69278 CCGCCCGACCAGCAGCGCTTGATCTTTGCTGGTAAACAGCTCGAAGATGGCCGCACCCTG 69337 Query 22387 TCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||| |||||||| || || ||||||||| | ||| | ||| | || |||| || ||| Sbjct 69338 GCCGACTACAACATCCAGAAGGAATCCACCCTTCATCTGGTTCTTCGCCTGCGTGGCGGT 69397 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || || |||| || || ||||| | || Sbjct 69398 ATGCAGATCTTCGTCAAGACCCTCACTGGGAAGACCATCACCCTGGAGGTGGAGTCTTCC 69457 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || |||| ||||| |||||||||||||| || || ||||| || Sbjct 69458 GACACCATCGACAATGTCAAGGCGAAAATCCAAGACAAGGAGGGCATCCCGCCCGACCAG 69517 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| | || ||||| |||||||| | || || ||||||| | |||| |||||| Sbjct 69518 CAACGCTTGATCTTTGCTGGCAAACAACTCGAAGACGGCCGCACCCTGGCCGACTACAAC 69577 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || ||||||||| | ||| | ||| |||| ||||||| || Sbjct 69578 ATCCAGAAGGAATCCACCCTCCATCTCGTTCTGCGCCTGCGCGGCGG 69624 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || || | || || ||||| |||| || ||||| || | | Sbjct 69626 ATGCAAATCTTTGTCAAGACACTGACGGGAAAAACAATCACGCTGGAAGTTGAGTCGTCA 69685 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | |||| || |||||||||||||| || ||||| ||||| || Sbjct 69686 GACACCATTGACAACGTCAAGTCGAAGATTCAAGACAAGGAAGGGATTCCCCCCGACCAG 69745 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || ||||| ||||||||||| ||| | ||||| || || | |||| |||||| Sbjct 69746 CAGCGACTTATCTTTGCCGGCAAGCAGCTCGAGGACGGACGAACATTGGCCGACTACAAC 69805 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || |||||| | || | || |||| | ||||| || Sbjct 69806 ATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGTCTCCGCGGCGG 69852 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || || | ||||| || || |||| || || ||||| | | Sbjct 69854 ATGCAGATTTTCGTCAAGACGCTGACCGGGAAGACCATCACGCTCGAGGTGGAGTCGTCT 69913 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || | || |||||||||||||||||||| ||||| || ||||| Sbjct 69914 GATACCATTGATAATGTGAAGTCGAAAATTCAAGACAAGGAGGGCATTCCTCCTGATCAG 69973 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || ||||| || || ||| | |||||| | ||| | |||| |||||| Sbjct 69974 CAGCGACTCATCTTTGCTGGTAAGCAGCTTGAGGATGGGAGAACCCTAGCCGACTACAAC 70033 Query 22399 ATTCAAAAAGAATCCAC 22415 |||||||| || || || Sbjct 70034 ATTCAAAAGGAGTCGAC 70050 >seq67 Length=171618 Score = 122 bits (134), Expect = 7e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| ||||| || || || | || || || || |||| || || ||||| | Sbjct 155916 AAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACCATCACCCTCGAGGTGGAGTCT 155857 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 |||| ||| | ||| || |||| || || || ||||||||||| || || ||||| Sbjct 155856 TCCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGAC 155797 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || || || || ||||| ||||| ||| | |||||| ||||||| | |||| ||| Sbjct 155796 CAGCAGCGACTCATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTGGCCGACTAC 155737 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| || || || |||| | || || || |||| ||||||| || Sbjct 155736 AACATCCAGAAGGAGAGCACCCTGCACTTGGTGCTGCGCCTGCGCGGTGG 155687 >seq2 Length=1075658 Score = 105 bits (116), Expect = 6e-18 Identities = 203/296 (69%), Gaps = 5/296 (2%) Strand=Plus/Plus Query 130102 AGTTCAAGGAAATCGTAAATGTCGGCGTGCCACGGTTCAACATAAATTGCCATTGCGCCC 130161 || |||||||| || | | ||||||||||| || || | || || || | |||||| Sbjct 442068 AGATCAAGGAATTCAAAGACATCGGCGTGCCAGGGCTCCAGGTAGATGGCGAAGGCGCCC 442127 Query 130162 TTCCG---TTTGCCCCCTTGGTCAACGTGGCGCACGGCATTGTTGTAGACTCGCAACATT 130218 || ||||| |||||||| |||| | | | |||||| ||||||||| ||| Sbjct 442128 GGTCGCTTGTTGCCGCCTTGGTCGACGTATCTGGCAGTGTTGTTGAAGACTCGCAGCATG 442187 Query 130219 GCCTCCAATCCGTTGGCCGTGCCGTTTGTGCTCTCAATGAAACTGCCACGAGCCCGAACG 130278 | | | ||||| | |||||||| |||| ||||| | || ||| |||| | Sbjct 442188 GGAACGACGCCGTTCGAGGTGCCGTTGGTGCCGGCAATGTAGGATCCGGTAGCACGAATG 442247 Query 130279 TTATGAACGCTTAGACCTATGCCGCCGCCAAATTTTGATATCAACGCGCAA-TCGCGTAG 130337 || ||| | || || || |||||| | | ||| || |||| |||||| || | || Sbjct 442248 CGGTGGACGTTCAGGCCGATACCGCCGGCCATTTTAGAAATCATGGCGCAAGTCTTG-AG 442306 Query 130338 CGTTTCATAAATGCCAACGATACTGTCTTCTTTAATGTTTAGGAGGAAACACGAGG 130393 || || || ||||| |||| |||||||| || |||| | |||||| ||||||| Sbjct 442307 AGTGTCGTAGATGCCCTCGATGCTGTCTTCCTTCATGTCGACGAGGAAGCACGAGG 442362 >seq13 Length=702126 Score = 95.1 bits (104), Expect = 1e-14 Identities = 129/180 (72%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 22227 TTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGT 22286 |||||| || || | || || || || |||| || || || || || |||| || | Sbjct 289076 TTTTGTGAAGACCCTGACGGGCAAGACCATCACGCTCGAGGTCGAGTCCTCCGACACGAT 289135 Query 22287 GGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCT 22346 ||| || |||| || || || ||||||||||| || || ||||| || || ||| | Sbjct 289136 CGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCTCCCGACCAGCAGCGTTT 289195 Query 22347 TATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAA 22406 || ||||| ||||| ||| | |||||| ||| ||| | |||| ||||||||||| || Sbjct 289196 GATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGAACCCTGGCCGACTACAACATTCAGAA 289255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419725703169685