Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09] 449 sequences; 39,397,682 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq26 100 6e-16 seq17 96.9 7e-15 >seq26 Length=532026 Score = 100 bits (110), Expect = 6e-16 Identities = 186/273 (68%), Gaps = 0/273 (0%) Strand=Plus/Plus Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755 || || || || ||||| || |||||||||||||||||||| | |||||||| || | Sbjct 391246 GTCGGCTCCCTCTCGGGCGGGTGGAAGATGAAGCTGGCCCTGGCGCGCGCCATGCTCAGG 391305 Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCC 279815 || ||||| || || || || || ||||| ||||||||| | ||| ||||| | ||| Sbjct 391306 CGGGCCGACGTGCTGCTCCTCGACGAGCCCACCAACCACCTCGACGTGGCCAACATTGCC 391365 Query 279816 TGGCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGAC 279875 ||||| | | |||||| | | | | | | | ||| || || || |||||| Sbjct 391366 TGGCTGGAGAACTACCTCAGGACGCACCCGGACATCACCAGCCTGATCGTGTCGCACGAC 391425 Query 279876 TCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGAAGCTC 279935 || |||||||| || ||| | | |||| ||||| |||| || ||||||| Sbjct 391426 TCGGGCTTCCTGGACAACGTCACGACCGACATCTACCACTACGAGCCCAACAAGAAGCTC 391485 Query 279936 TCCAAGCACATCGGCAACCTGTCTGCTTTCGTG 279968 || || ||||||||| | || || ||| Sbjct 391486 GCCTGCTACCGGGGCAACCTGGCCGCCTTTGTG 391518 >seq17 Length=619487 Score = 96.9 bits (106), Expect = 7e-15 Identities = 165/234 (71%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 280160 CTCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCT 280219 ||| || || | |||||||| ||||| ||||| || || ||||| || ||||| ||| | Sbjct 582052 CTCTCGTATCGCCGTCATTGGTCCCAACGGTGCCGGCAAATCTACTCTGATCAACGTCTT 582111 Query 280220 GACTGGCGAGACCCAGGCCACTGAGGGGTCCG-TTTGGAAGCATCCCAACATGCGGATGG 280278 ||| || ||| | || || | |||| | ||| |||| ||||| || || | Sbjct 582112 GACCGGTGAG-CTCATCCCGACGCAGGGTGAGATTTACCAGCACGAGAACATCCGTATCG 582170 Query 280279 CTTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACC 280338 | ||| || |||||||| ||| ||||||||| ||||||||||||| ||| || | Sbjct 582171 CCTACATCAAGCAGCACGCCTTCGCCCACATCGATAACCACCTGGACAAGACCCCCTCCG 582230 Query 280339 AATACATTCAGTGGCGCTATGCA-AGTGGGCAGGATCTGGAGTCGGTGGATCGC 280391 | || ||||| ||||| | | || | ||| | |||| || || |||||||| Sbjct 582231 AGTATATTCAATGGCGAT-TCCAGACTGGCGAAGATCGCGAAACGATGGATCGC 582283 Score = 84.2 bits (92), Expect = 4e-11 Identities = 92/120 (77%), Gaps = 2/120 (2%) Strand=Plus/Plus Query 280704 CACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCA-GC 280762 ||||| || || || ||||| ||||| || ||| ||||| ||| | | || || Sbjct 582641 CACTCGCGTATGCGTGGTCTCTCTGGCGGTCAGCGTGTCAAGACTGTGCTGGCTGCTTGC 582700 Query 280763 TCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGCGA 280822 || |||||||| |||||| |||| || ||||||||||||||||||||||| ||||| || Sbjct 582701 TC-GTGGCAACGACCTCACCTGATTGTGCTCGACGAGCCTACCAACTATCTTGACCGAGA 582759 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027830887047609