Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09]
449 sequences; 39,397,682 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq56 188 1e-42
seq67 185 2e-41
seq26 98.7 2e-15
seq17 84.2 4e-11
>seq56
Length=194926
Score = 188 bits (208), Expect = 1e-42
Identities = 178/227 (78%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| ||||| || |||| |||| ||| || |||||||| || |||||||| || ||||
Sbjct 69852 CCGCCGCGGAGACGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCC 69793
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
| ||| | || || || | |||||| ||||| || || |||| || |||||||| |||
Sbjct 69792 AATGTTCGTCCGTCCTCGAGCTGCTTGCCGGCAAAGATAAGTCGCTGCTGGTCGGGGGGA 69733
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| |||||||||||||||||||| | ||||||| || |||||||||| || || |||
Sbjct 69732 ATCCCTTCCTTGTCTTGAATCTTCGACTTGACGTTGTCAATGGTGTCTGACGACTCAACT 69673
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|||| ||||| ||||||||||| || |||||||| || || |||||
Sbjct 69672 TCCAGCGTGATTGTTTTTCCCGTCAGTGTCTTGACAAAGATTTGCAT 69626
Score = 161 bits (178), Expect = 2e-34
Identities = 172/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| ||||| ||||||| || | || || ||||| || || |||||||| || ||||
Sbjct 69624 CCGCCGCGCAGGCGCAGAACGAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCC 69565
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | || ||||| | || || || || || || | | ||| |||||||| ||
Sbjct 69564 AGGGTGCGGCCGTCTTCGAGTTGTTTGCCAGCAAAGATCAAGCGTTGCTGGTCGGGCGGG 69505
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| ||||||||||| || || |||||||| ||||||||||| | || || ||
Sbjct 69504 ATGCCCTCCTTGTCTTGGATTTTCGCCTTGACATTGTCGATGGTGTCGGAAGACTCCACC 69445
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|||| ||||||||| || || ||||||||||||||||| ||||||||
Sbjct 69444 TCCAGGGTGATGGTCTTCCCAGTGAGGGTCTTGACGAAGATCTGCAT 69398
Score = 152 bits (168), Expect = 9e-32
Identities = 170/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || ||||| | |||| || || ||||| || || |||||||| || ||||
Sbjct 69396 CCGCCACGCAGGCGAAGAACCAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCC 69337
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | |||||||| | ||| || || || || || | | || |||||||| ||
Sbjct 69336 AGGGTGCGGCCATCTTCGAGCTGTTTACCAGCAAAGATCAAGCGCTGCTGGTCGGGCGGG 69277
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| |||||||||||||| || | |||||| ||||||||||| | || || ||
Sbjct 69276 ATGCCCTCCTTGTCTTGAATTTTCGACTTGACATTGTCGATGGTGTCAGAAGACTCCACC 69217
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | ||||||||| ||||| ||||||||||| ||||| || |||||
Sbjct 69216 TCGAGGGTGATGGTCTTTCCGGTGAGGGTCTTTACGAAGATTTGCAT 69170
Score = 152 bits (168), Expect = 9e-32
Identities = 170/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || ||||| | |||| ||| | ||| ||||| ||||| ||||| || ||||
Sbjct 70080 CCACCACGCAGGCGGAGCACCAGGTGCAACGTCGACTCCTTTTGAATGTTGTAGTCGGCT 70021
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || |||||||| || | |||||| || || || ||||||| || || || || |||
Sbjct 70020 AGGGTTCTCCCATCCTCAAGCTGCTTACCAGCAAAGATGAGTCGCTGCTGATCAGGAGGA 69961
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| |||||||||||||| || | ||| || || ||||| || | || || ||
Sbjct 69960 ATGCCCTCCTTGTCTTGAATTTTCGACTTCACATTATCAATGGTATCAGACGACTCCACC 69901
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | |||||||| || || || || ||||||||||| ||||||||
Sbjct 69900 TCGAGCGTGATGGTCTTCCCGGTCAGCGTCTTGACGAAAATCTGCAT 69854
>seq67
Length=171618
Score = 185 bits (204), Expect = 2e-41
Identities = 177/227 (78%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| ||||| ||||||| |||||||| || ||| ||| || |||||||| || ||||
Sbjct 155687 CCACCGCGCAGGCGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGCC 155746
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||| || | |||||| || || || ||||||| || |||||||| ||
Sbjct 155747 AGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGGG 155806
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| |||||||| || ||||| | |||||| ||||||||||| | || || ||
Sbjct 155807 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 155866
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | ||||||||| || |||||||||||||||||||| ||||||||
Sbjct 155867 TCGAGGGTGATGGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 155913
>seq26
Length=532026
Score = 98.7 bits (108), Expect = 2e-15
Identities = 153/219 (70%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 224961 GGTCCTGGCCTGAGGCATACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGT 225020
|||| | ||| ||| || |||||||| | |||||||||||| ||| | ||||||||
Sbjct 391927 GGTCGTCGCCGTTGGCGTAGCGCCACTGCAGGTACTGGTTGGGCGTCTTCTCCAGGTGCA 391868
Query 225021 TCTCAATATGGTGGAAAGCATGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCC 225080
|||| | || | | || ||||| | ||| | ||||||| |||||| ||||||
Sbjct 391867 TCTCGACGTGCTCCAGGGCGTGCTGCTTGATGTAGCCGATGCGCAGGTTGGGGTGCTTCT 391808
Query 225081 ACACAGAGCCCCGAGTCGGTTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGC 225140
||| ||| || || |||| || ||||| | ||||||||| ||| ||||||
Sbjct 391807 CCACCTTGCCGGCGGTGGGCACCACCTCCCCCGTGAGCAGCTTGATGAGGGTACTCTTGC 391748
Query 225141 CCGCACCATTGGGGCCAATCACGCCAATCCGGGATGACA 225179
| || || ||||| || || ||| | | || || ||||
Sbjct 391747 CGGCCCCGTTGGGCCCGATGACGGCGACGCGCGACGACA 391709
>seq17
Length=619487
Score = 84.2 bits (92), Expect = 4e-11
Identities = 137/195 (70%), Gaps = 2/195 (1%)
Strand=Plus/Minus
Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040
||||| || || |||| | ||||||| ||||||||||||| || || ||| ||| ||
Sbjct 582246 CGCCATTGAATATACTCGGAGGGGGTCTTGTCCAGGTGGTTATCGATGTGGGCGAAGGCG 582187
Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTC-GG 225099
||||| | ||| || || || ||||| |||| | | ||| | ||| ||
Sbjct 582186 TGCTGCTTGATGTAGGCGATACGGATGTTCTCGTGCTGGTAAATCTCACCCTGCGTCGGG 582127
Query 225100 TTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAAT 225159
|| | ||| ||||| | ||| ||||| || |||| ||||| ||||| ||||| |||||
Sbjct 582126 ATGAG-CTCACCGGTCAAGACGTTGATCAGAGTAGATTTGCCGGCACCGTTGGGACCAAT 582068
Query 225160 CACGCCAATCCGGGA 225174
||| | || || ||
Sbjct 582067 GACGGCGATACGAGA 582053
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921617227394280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |