Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09] 449 sequences; 39,397,682 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq56 188 1e-42 seq67 185 2e-41 seq26 98.7 2e-15 seq17 84.2 4e-11 >seq56 Length=194926 Score = 188 bits (208), Expect = 1e-42 Identities = 178/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| || |||| |||| ||| || |||||||| || |||||||| || |||| Sbjct 69852 CCGCCGCGGAGACGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCC 69793 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | ||| | || || || | |||||| ||||| || || |||| || |||||||| ||| Sbjct 69792 AATGTTCGTCCGTCCTCGAGCTGCTTGCCGGCAAAGATAAGTCGCTGCTGGTCGGGGGGA 69733 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || |||||||||||||||||||| | ||||||| || |||||||||| || || ||| Sbjct 69732 ATCCCTTCCTTGTCTTGAATCTTCGACTTGACGTTGTCAATGGTGTCTGACGACTCAACT 69673 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| ||||| ||||||||||| || |||||||| || || ||||| Sbjct 69672 TCCAGCGTGATTGTTTTTCCCGTCAGTGTCTTGACAAAGATTTGCAT 69626 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| ||||||| || | || || ||||| || || |||||||| || |||| Sbjct 69624 CCGCCGCGCAGGCGCAGAACGAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCC 69565 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || ||||| | || || || || || || | | ||| |||||||| || Sbjct 69564 AGGGTGCGGCCGTCTTCGAGTTGTTTGCCAGCAAAGATCAAGCGTTGCTGGTCGGGCGGG 69505 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| ||||||||||| || || |||||||| ||||||||||| | || || || Sbjct 69504 ATGCCCTCCTTGTCTTGGATTTTCGCCTTGACATTGTCGATGGTGTCGGAAGACTCCACC 69445 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| ||||||||| || || ||||||||||||||||| |||||||| Sbjct 69444 TCCAGGGTGATGGTCTTCCCAGTGAGGGTCTTGACGAAGATCTGCAT 69398 Score = 152 bits (168), Expect = 9e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||| | |||| || || ||||| || || |||||||| || |||| Sbjct 69396 CCGCCACGCAGGCGAAGAACCAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCC 69337 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | ||| || || || || || | | || |||||||| || Sbjct 69336 AGGGTGCGGCCATCTTCGAGCTGTTTACCAGCAAAGATCAAGCGCTGCTGGTCGGGCGGG 69277 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||||||||| || | |||||| ||||||||||| | || || || Sbjct 69276 ATGCCCTCCTTGTCTTGAATTTTCGACTTGACATTGTCGATGGTGTCAGAAGACTCCACC 69217 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||| ||||| ||||||||||| ||||| || ||||| Sbjct 69216 TCGAGGGTGATGGTCTTTCCGGTGAGGGTCTTTACGAAGATTTGCAT 69170 Score = 152 bits (168), Expect = 9e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||| | |||| ||| | ||| ||||| ||||| ||||| || |||| Sbjct 70080 CCACCACGCAGGCGGAGCACCAGGTGCAACGTCGACTCCTTTTGAATGTTGTAGTCGGCT 70021 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || |||||||| || | |||||| || || || ||||||| || || || || ||| Sbjct 70020 AGGGTTCTCCCATCCTCAAGCTGCTTACCAGCAAAGATGAGTCGCTGCTGATCAGGAGGA 69961 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||||||||| || | ||| || || ||||| || | || || || Sbjct 69960 ATGCCCTCCTTGTCTTGAATTTTCGACTTCACATTATCAATGGTATCAGACGACTCCACC 69901 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||| || || || || ||||||||||| |||||||| Sbjct 69900 TCGAGCGTGATGGTCTTCCCGGTCAGCGTCTTGACGAAAATCTGCAT 69854 >seq67 Length=171618 Score = 185 bits (204), Expect = 2e-41 Identities = 177/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| ||||||| |||||||| || ||| ||| || |||||||| || |||| Sbjct 155687 CCACCGCGCAGGCGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGCC 155746 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || || || ||||||| || |||||||| || Sbjct 155747 AGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGGG 155806 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| | |||||| ||||||||||| | || || || Sbjct 155807 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 155866 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||| || |||||||||||||||||||| |||||||| Sbjct 155867 TCGAGGGTGATGGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 155913 >seq26 Length=532026 Score = 98.7 bits (108), Expect = 2e-15 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 224961 GGTCCTGGCCTGAGGCATACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGT 225020 |||| | ||| ||| || |||||||| | |||||||||||| ||| | |||||||| Sbjct 391927 GGTCGTCGCCGTTGGCGTAGCGCCACTGCAGGTACTGGTTGGGCGTCTTCTCCAGGTGCA 391868 Query 225021 TCTCAATATGGTGGAAAGCATGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCC 225080 |||| | || | | || ||||| | ||| | ||||||| |||||| |||||| Sbjct 391867 TCTCGACGTGCTCCAGGGCGTGCTGCTTGATGTAGCCGATGCGCAGGTTGGGGTGCTTCT 391808 Query 225081 ACACAGAGCCCCGAGTCGGTTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGC 225140 ||| ||| || || |||| || ||||| | ||||||||| ||| |||||| Sbjct 391807 CCACCTTGCCGGCGGTGGGCACCACCTCCCCCGTGAGCAGCTTGATGAGGGTACTCTTGC 391748 Query 225141 CCGCACCATTGGGGCCAATCACGCCAATCCGGGATGACA 225179 | || || ||||| || || ||| | | || || |||| Sbjct 391747 CGGCCCCGTTGGGCCCGATGACGGCGACGCGCGACGACA 391709 >seq17 Length=619487 Score = 84.2 bits (92), Expect = 4e-11 Identities = 137/195 (70%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040 ||||| || || |||| | ||||||| ||||||||||||| || || ||| ||| || Sbjct 582246 CGCCATTGAATATACTCGGAGGGGGTCTTGTCCAGGTGGTTATCGATGTGGGCGAAGGCG 582187 Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTC-GG 225099 ||||| | ||| || || || ||||| |||| | | ||| | ||| || Sbjct 582186 TGCTGCTTGATGTAGGCGATACGGATGTTCTCGTGCTGGTAAATCTCACCCTGCGTCGGG 582127 Query 225100 TTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAAT 225159 || | ||| ||||| | ||| ||||| || |||| ||||| ||||| ||||| ||||| Sbjct 582126 ATGAG-CTCACCGGTCAAGACGTTGATCAGAGTAGATTTGCCGGCACCGTTGGGACCAAT 582068 Query 225160 CACGCCAATCCGGGA 225174 ||| | || || || Sbjct 582067 GACGGCGATACGAGA 582053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921617227394280