Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09] 449 sequences; 39,397,682 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq2 471 8e-128 seq1 183 6e-41 >seq2 Length=1075658 Score = 471 bits (522), Expect = 8e-128 Identities = 1142/1709 (67%), Gaps = 49/1709 (3%) Strand=Plus/Plus Query 243737 ACGCTGAACTGGACGGGTGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTCTTG 243796 ||| ||||||||| ||| || ||||||| | || | || |||||||||||| |||||| Sbjct 440751 ACGGTGAACTGGATGGGGGCCGCGGCGGCTTGCGTGCGCAAGTAGTACATGCCAGTCTTG 440810 Query 243797 AGTCCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTTGGG 243856 || || ||| || | |||||| | ||| | ||| ||| | |||| Sbjct 440811 AGACCCAGCTTCCACCCGGCAAAGTGCATCGACGTGATCTTGCCCATGGT------TGGG 440864 Query 243857 TCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCT 243916 || | | | ||| | ||||| |||||| |||||||| |||| | || || Sbjct 440865 TCCTTCATGT---GAATG---TTGAGAGACTGGGACTGGTCGATAAAGGCACCGCGGTCG 440918 Query 243917 GCGGCCATGGTGATGAGGTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTTG 243976 |||||||| | | | ||| || || || | |||||||||| | | ||| Sbjct 440919 GCGGCCATCTGCACCACATGACGCTGCGAAATTTCCCAGACCGTCTTGTACAGAGCCTTT 440978 Query 243977 AGGTGCTCGGGGAACCCTTCG-ATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGT 244035 | | | | ||||| | | |||||||| | |||||| || | | | |||| | | Sbjct 440979 ACCT-CGCCGGGAATGTTGGGGATGTTCTGGATCGAGCCGTTCTCGGCAATGATGCGATT 441037 Query 244036 GCGCATGTTATCGTTCCACAGGCCCAAGCGCTCCAGCGCCTCGACCAGGTGCCTGTTCAC 244095 |||| || |||||| |||| | | || ||| || || ||| || Sbjct 441038 CTTCATGGCGTCTGACCACAGACCCATGTCGACGAGATCCTTGAGAAGCCATGGGTTGAC 441097 Query 244096 CACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGAT 244155 ||||| ||||| |||| ||| ||||| |||||||| | |||| || ||||||| Sbjct 441098 GACCTGGAACTCGCCCGCCAGGACGCGTCGCTGGTAAATGTTGGACGTGTAGGGCTCGAA 441157 Query 244156 GCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAG 244215 || ||| |||||||||| ||||||| |||| ||| || |||||||||| | |||||| Sbjct 441158 GCACTCGTTGTTGCCCAGAATCTGCGACGTGGACGCCGTGGGCATGGGCGCGAGCAGCAG 441217 Query 244216 ACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCACATGCC 244275 ||| | | |||||| || ||| | |||| | ||| ||||||| | | Sbjct 441218 CGAGTTGCGAATCCCGTGCTCCTTGATCTGCTCCTTGAGGGAATCCCACTCCCACAAGTC 441277 Query 244276 CGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTT-GCTGACGG 244334 || | | || |||| |||||||||||||||||| | || | | | ||| Sbjct 441278 GGACGG--CGTCACGTT-------CCACATGTCAAACTGCAGGATGCCTTCAGAGGCCGG 441328 Query 244335 GGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTT-ACAGCTCTCGTCG 244393 | | |||| | | || | ||||||||| || || |||||||| || | |||| Sbjct 441329 AGAT-CCCTTGAACGTGGAGTAGGGACCCTCCTCCTTGGCCAGCTCCACCGACGCCGTCA 441387 Query 244394 AGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCGCAG 244453 ||| |||||| |||||||||||| || ||| |||||||| ||||| |||| | | Sbjct 441388 AGG-CGGCGTGGTAGATGGTCTCAAAAATCTGCTTGTTCAGCTCGCGAGCCTCGGGAGAC 441446 Query 244454 GTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATG 244513 ||||| |||| | | | |||| ||||||||| || || || |||| || ||| Sbjct 441447 TCAAAGGGCATGCGAAGCGCAAGGAAGGCGTCGGCCAAGCCTTGAACACCGACACCAATG 441506 Query 244514 GGTCTGTGTCGCTTGTTGGAGC-GCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGAT 244572 || | || ||| ||||| | || || |||| | |||||||| |||| ||||||| Sbjct 441507 GGACGATGCCGCATGTTGCTGTTGCGTG-CTTCTTGGACGGGGTAGTGGTTGACGTCGAT 441565 Query 244573 CACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTA 244632 | ||||||||| || ||| | || |||| ||||||| |||| || |||||||| Sbjct 441566 GATCTTGTTGAGATTTCGGACAACCACGCGGGTGACGTCGTGCAGCTTTTGGAAGTCGTA 441625 Query 244633 CTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGGCCAG 244692 || | ||| || | || ||| ||||| || ||||| | | ||| || Sbjct 441626 CTTG-------CCTTGG---TCGTAGTCC--ACAAAGGCGGGCAGGGCAAGGGAGGCAAG 441673 Query 244693 GTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACT 244752 |||||||||||| ||||| || | | | ||||| || |||||||||||||||||| Sbjct 441674 GTTGCAGACGGCAACCTCGTCGGGGGCCGAGTACTCGATAATCTCGGTGCAGAGGTTGGA 441733 Query 244753 GCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAG 244812 || ||||| |||| || || || ||| ||| |||||| |||||||| || Sbjct 441734 GCTGCGAATGGTTCCCAAGTTCTTCTGGTTGCTCTTCCTGTTGCAATGATCCTTGTACAG 441793 Query 244813 CATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGC 244872 ||| ||||| || |||||| ||| || |||||| || ||| || | | || Sbjct 441794 CATAAAGGGGTTGCCAGTCTCGGTCTGAGCCTCGAGGATCGAGTACCACAGCTTCTGGGC 441853 Query 244873 CTTGACCGTCCTGCGAGCCTTGCCCTCTGC-CTCGTAGCGGGTGTACAGGGCCTCGAACT 244931 || ||| |||| ||| | ||| || |||||| |||| ||||| |||| Sbjct 441854 GCGGATTGTCTTGCG-GCCACGGCCTTCGCGCTCGTACTTTTCATACAAAGCCTCAAACT 441912 Query 244932 CGGGGCCCCAGACCTCGTCTAGGCCGGGGCA--CGACGCCGGGCACATGAGACTCCACTC 244989 || ||| || ||| | || || ||||| || | ||||||||||| |||| || Sbjct 441913 CGTCGCCGTAGCAGTCGGCGAGCCCAGGGCATTCGTTG--GGGCACATGAGGGTCCAGTC 441970 Query 244990 GCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTC 245049 ||| | || ||| | || ||||||||||||||||||||| || || |||||||||| Sbjct 441971 GCCATTCTTCTCGACACGCTTCATGAAGAGGTCGGGGATCCACAGCGCAAGGAAGAGGTC 442030 Query 245050 CCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTC 245109 | | | || ||| ||| |||||| || || || | || |||||||| || Sbjct 442031 GCGAGCGCGGACTTCCTCCTTGCCGTGGTTCTTTCTGAGATCAAGGAATTCAAAGACATC 442090 Query 245110 GACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTC 245169 | ||||||||||||||| ||||| |||| |||||| || ||||||||||| || ||||| Sbjct 442091 GGCGTGCCAGGGCTCCAGGTAGATGGCGAAGGCGCCCGGTCGCTTGTTGCCGCCTTGGTC 442150 Query 245170 CACCATCCTCTCGAGCG-CGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGC 245228 || || | || | |||||||| ||||| | || || | |||||| ||| || Sbjct 442151 GACGTATCTGGC-AGTGTTGTTGAAGACTCGCAGCATGGGAACGACGCCGTTCGAGGTGC 442209 Query 245229 CGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACATGCCTAGTC 245288 |||||||||| ||||||| || | | | | | | || | || ||| | | Sbjct 442210 CGTTGGTGCCGGCAATGTAGGATCCGGTAGCACGAATGCGGTGGACGTTCAGGCCGATAC 442269 Query 245289 CGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGC 245348 ||||||| || || || | |||||| |||||| ||||| |||||||| |||| Sbjct 442270 CGCCGGCCATTTTAGAAATCATGGCGCAAGTCTTGAGAGTGTCGTAGATGCCCTCGATGC 442329 Query 245349 TGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACGAGT 245408 |||| |||||||| || || ||||| ||||| ||||| || || ||| || || Sbjct 442330 TGTCTTCCTTCATGTCGACGAGGAAGCACGAGGAAAGCTGACACTGAGGCGTGCCCGCGT 442389 Query 245409 TGAACAGAGTGGGGCTGGCGTGGGTAAAG 245437 |||| || || || ||||||||| ||| Sbjct 442390 TGAAGAGGGTAGGTGAGGCGTGGGTGAAG 442418 >seq1 Length=2302571 Score = 183 bits (202), Expect = 6e-41 Identities = 362/519 (70%), Gaps = 15/519 (3%) Strand=Plus/Plus Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACG-CAAC 42691 || |||||| || ||||| |||||||| || ||||||| | || | | | | | Sbjct 1624745 CCTTGCATCCGTAAAAAGGCCGACTGGGCCATCCGCTGGATCCA-AGACAAGGAGTCTAG 1624803 Query 42692 GTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTT 42751 |||| | | | |||| ||||| |||| |||||||||||||||||| || || || Sbjct 1624804 CTTCGCCCAACGATTGGTTGCCTTCGCCGCTGTCGAGGGCATCTTCTTCAGTGGTGCATT 1624863 Query 42752 CGCCTCCATCTTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACG 42810 ||| |||||||| ||||||||| || || || |||||||| || |||||||| |||| Sbjct 1624864 CGCGTCCATCTTTTGGCTCAAGAAGCGCGGCCTC-ATGCCCGGGCTTACCTTCTCAAACG 1624922 Query 42811 AACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCC 42870 ||||||| | | |||||||| |||| | |||||||| ||||| ||| ||| | Sbjct 1624923 AACTCATATCCCGTGACGAGGGTTTGCACACCGACTTTGCATGCCTGCTGCACTC---TC 1624979 Query 42871 ACCTCAGGCACA-AGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAG 42929 | |||| ||| | ||| | ||| | ||| | |||||||| || ||||| Sbjct 1624980 ATCTCAAGCAAAGAGCAAGC-AAGCAAATCATCCAAGAAATCATCACCGATGCCGTCACC 1625038 Query 42930 ATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTG-TCCCTGGTCGGCATGAACCACGA 42988 || ||| | || ||||| ||| || | ||| ||||| | || ||||||||||| | Sbjct 1625039 ATTGAGCAAGATTTCCTGACGGAGGCTCTG-CCGTGCGCTCTTCTCGGCATGAACTCCAC 1625097 Query 42989 CCTCATG-TGCAAGTACATCCAGTACGTCGCCGACCATCTCCT-GTGCCAGATGGGTCTC 43046 || ||| |||| |||||| | | ||| ||||||| || | || | ||| | Sbjct 1625098 ACTGATGAAGCAA-TACATCGAATTCGTTGCCGACCGCCTGTTGGTTGCTCTCGGGAATG 1625156 Query 43047 AGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGC 43106 | | | ||||| || || || || || ||||||||||| ||||| ||| ||| Sbjct 1625157 AAAAG-GTGTACAAGACAGCGAATCCGTTTGATTTTATGGAGAATATCTCCCTGGGTGGC 1625215 Query 43107 AAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145 |||||||||||||| |||||||| || | || |||||| Sbjct 1625216 AAGACCAACTTTTTTGAGAAGCGAGTTGGTGAATACCAG 1625254 Score = 107 bits (118), Expect = 4e-18 Identities = 220/324 (68%), Gaps = 5/324 (2%) Strand=Plus/Plus Query 42309 ATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGAC 42368 |||||||||||||| || || |||||| ||||| ||||| |||||| ||||||| Sbjct 1624352 ATGTACAAGAAGGCTGAGGCTTCTTTCTGGACAGCCGAAGAGATAGACCTGTCCAAGGAT 1624411 Query 42369 ACGGCCGGCTGGGAGTCACTGTCTGA--GA--ACGAAAAGTTTTTCCTCAAAAACATACT 42424 | || || ||| | | | |||| || | ||||||| |||| | |||| | Sbjct 1624412 TTGCACGACT-GGAATAATCGCCTGAACGACGATGAAAAGTATTTCATTTCTCACATCTT 1624470 Query 42425 GGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGAA 42484 ||| ||||| || ||||| || ||||| ||||| || ||||||| |||||| Sbjct 1624471 GGCATTCTTTGCTGCCTCGGATGGCATCGTCAACGAAAACCTGGTTGAGCGGTTCAGCGG 1624530 Query 42485 AGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGT 42544 ||||||||| ||| || || || |||||||| |||||||| || ||||| | Sbjct 1624531 CGAGGTGCAGGTTCCTGAAGCCCGTTGTTTCTACGGGTTCCAGATCATGATGGAGAATAT 1624590 Query 42545 GCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGTAA 42604 || || ||| ||| | | || || ||||||| ||| ||| | || |||| || Sbjct 1624591 CCATTCCGAGACGTATTCTTTATTGATCGACACGTATATCAAGGAGCACGCGCAGCGAAA 1624650 Query 42605 CGGGCTGTTCAAGGCCATGGAGAC 42628 || ||||| ||||| || || Sbjct 1624651 TTACCTCTTCAATGCCATTGAAAC 1624674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944333899896240