Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09]
449 sequences; 39,397,682 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq2 471 8e-128
seq1 183 6e-41
>seq2
Length=1075658
Score = 471 bits (522), Expect = 8e-128
Identities = 1142/1709 (67%), Gaps = 49/1709 (3%)
Strand=Plus/Plus
Query 243737 ACGCTGAACTGGACGGGTGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTCTTG 243796
||| ||||||||| ||| || ||||||| | || | || |||||||||||| ||||||
Sbjct 440751 ACGGTGAACTGGATGGGGGCCGCGGCGGCTTGCGTGCGCAAGTAGTACATGCCAGTCTTG 440810
Query 243797 AGTCCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTTGGG 243856
|| || ||| || | |||||| | ||| | ||| ||| | ||||
Sbjct 440811 AGACCCAGCTTCCACCCGGCAAAGTGCATCGACGTGATCTTGCCCATGGT------TGGG 440864
Query 243857 TCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCT 243916
|| | | | ||| | ||||| |||||| |||||||| |||| | || ||
Sbjct 440865 TCCTTCATGT---GAATG---TTGAGAGACTGGGACTGGTCGATAAAGGCACCGCGGTCG 440918
Query 243917 GCGGCCATGGTGATGAGGTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTTG 243976
|||||||| | | | ||| || || || | |||||||||| | | |||
Sbjct 440919 GCGGCCATCTGCACCACATGACGCTGCGAAATTTCCCAGACCGTCTTGTACAGAGCCTTT 440978
Query 243977 AGGTGCTCGGGGAACCCTTCG-ATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGT 244035
| | | | ||||| | | |||||||| | |||||| || | | | |||| | |
Sbjct 440979 ACCT-CGCCGGGAATGTTGGGGATGTTCTGGATCGAGCCGTTCTCGGCAATGATGCGATT 441037
Query 244036 GCGCATGTTATCGTTCCACAGGCCCAAGCGCTCCAGCGCCTCGACCAGGTGCCTGTTCAC 244095
|||| || |||||| |||| | | || ||| || || ||| ||
Sbjct 441038 CTTCATGGCGTCTGACCACAGACCCATGTCGACGAGATCCTTGAGAAGCCATGGGTTGAC 441097
Query 244096 CACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGAT 244155
||||| ||||| |||| ||| ||||| |||||||| | |||| || |||||||
Sbjct 441098 GACCTGGAACTCGCCCGCCAGGACGCGTCGCTGGTAAATGTTGGACGTGTAGGGCTCGAA 441157
Query 244156 GCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAG 244215
|| ||| |||||||||| ||||||| |||| ||| || |||||||||| | ||||||
Sbjct 441158 GCACTCGTTGTTGCCCAGAATCTGCGACGTGGACGCCGTGGGCATGGGCGCGAGCAGCAG 441217
Query 244216 ACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCACATGCC 244275
||| | | |||||| || ||| | |||| | ||| ||||||| | |
Sbjct 441218 CGAGTTGCGAATCCCGTGCTCCTTGATCTGCTCCTTGAGGGAATCCCACTCCCACAAGTC 441277
Query 244276 CGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTT-GCTGACGG 244334
|| | | || |||| |||||||||||||||||| | || | | | |||
Sbjct 441278 GGACGG--CGTCACGTT-------CCACATGTCAAACTGCAGGATGCCTTCAGAGGCCGG 441328
Query 244335 GGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTT-ACAGCTCTCGTCG 244393
| | |||| | | || | ||||||||| || || |||||||| || | ||||
Sbjct 441329 AGAT-CCCTTGAACGTGGAGTAGGGACCCTCCTCCTTGGCCAGCTCCACCGACGCCGTCA 441387
Query 244394 AGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCGCAG 244453
||| |||||| |||||||||||| || ||| |||||||| ||||| |||| | |
Sbjct 441388 AGG-CGGCGTGGTAGATGGTCTCAAAAATCTGCTTGTTCAGCTCGCGAGCCTCGGGAGAC 441446
Query 244454 GTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATG 244513
||||| |||| | | | |||| ||||||||| || || || |||| || |||
Sbjct 441447 TCAAAGGGCATGCGAAGCGCAAGGAAGGCGTCGGCCAAGCCTTGAACACCGACACCAATG 441506
Query 244514 GGTCTGTGTCGCTTGTTGGAGC-GCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGAT 244572
|| | || ||| ||||| | || || |||| | |||||||| |||| |||||||
Sbjct 441507 GGACGATGCCGCATGTTGCTGTTGCGTG-CTTCTTGGACGGGGTAGTGGTTGACGTCGAT 441565
Query 244573 CACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTA 244632
| ||||||||| || ||| | || |||| ||||||| |||| || ||||||||
Sbjct 441566 GATCTTGTTGAGATTTCGGACAACCACGCGGGTGACGTCGTGCAGCTTTTGGAAGTCGTA 441625
Query 244633 CTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGGCCAG 244692
|| | ||| || | || ||| ||||| || ||||| | | ||| ||
Sbjct 441626 CTTG-------CCTTGG---TCGTAGTCC--ACAAAGGCGGGCAGGGCAAGGGAGGCAAG 441673
Query 244693 GTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACT 244752
|||||||||||| ||||| || | | | ||||| || ||||||||||||||||||
Sbjct 441674 GTTGCAGACGGCAACCTCGTCGGGGGCCGAGTACTCGATAATCTCGGTGCAGAGGTTGGA 441733
Query 244753 GCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAG 244812
|| ||||| |||| || || || ||| ||| |||||| |||||||| ||
Sbjct 441734 GCTGCGAATGGTTCCCAAGTTCTTCTGGTTGCTCTTCCTGTTGCAATGATCCTTGTACAG 441793
Query 244813 CATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGC 244872
||| ||||| || |||||| ||| || |||||| || ||| || | | ||
Sbjct 441794 CATAAAGGGGTTGCCAGTCTCGGTCTGAGCCTCGAGGATCGAGTACCACAGCTTCTGGGC 441853
Query 244873 CTTGACCGTCCTGCGAGCCTTGCCCTCTGC-CTCGTAGCGGGTGTACAGGGCCTCGAACT 244931
|| ||| |||| ||| | ||| || |||||| |||| ||||| ||||
Sbjct 441854 GCGGATTGTCTTGCG-GCCACGGCCTTCGCGCTCGTACTTTTCATACAAAGCCTCAAACT 441912
Query 244932 CGGGGCCCCAGACCTCGTCTAGGCCGGGGCA--CGACGCCGGGCACATGAGACTCCACTC 244989
|| ||| || ||| | || || ||||| || | ||||||||||| |||| ||
Sbjct 441913 CGTCGCCGTAGCAGTCGGCGAGCCCAGGGCATTCGTTG--GGGCACATGAGGGTCCAGTC 441970
Query 244990 GCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTC 245049
||| | || ||| | || ||||||||||||||||||||| || || ||||||||||
Sbjct 441971 GCCATTCTTCTCGACACGCTTCATGAAGAGGTCGGGGATCCACAGCGCAAGGAAGAGGTC 442030
Query 245050 CCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTC 245109
| | | || ||| ||| |||||| || || || | || |||||||| ||
Sbjct 442031 GCGAGCGCGGACTTCCTCCTTGCCGTGGTTCTTTCTGAGATCAAGGAATTCAAAGACATC 442090
Query 245110 GACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTC 245169
| ||||||||||||||| ||||| |||| |||||| || ||||||||||| || |||||
Sbjct 442091 GGCGTGCCAGGGCTCCAGGTAGATGGCGAAGGCGCCCGGTCGCTTGTTGCCGCCTTGGTC 442150
Query 245170 CACCATCCTCTCGAGCG-CGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGC 245228
|| || | || | |||||||| ||||| | || || | |||||| ||| ||
Sbjct 442151 GACGTATCTGGC-AGTGTTGTTGAAGACTCGCAGCATGGGAACGACGCCGTTCGAGGTGC 442209
Query 245229 CGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACATGCCTAGTC 245288
|||||||||| ||||||| || | | | | | | || | || ||| | |
Sbjct 442210 CGTTGGTGCCGGCAATGTAGGATCCGGTAGCACGAATGCGGTGGACGTTCAGGCCGATAC 442269
Query 245289 CGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGC 245348
||||||| || || || | |||||| |||||| ||||| |||||||| ||||
Sbjct 442270 CGCCGGCCATTTTAGAAATCATGGCGCAAGTCTTGAGAGTGTCGTAGATGCCCTCGATGC 442329
Query 245349 TGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACGAGT 245408
|||| |||||||| || || ||||| ||||| ||||| || || ||| || ||
Sbjct 442330 TGTCTTCCTTCATGTCGACGAGGAAGCACGAGGAAAGCTGACACTGAGGCGTGCCCGCGT 442389
Query 245409 TGAACAGAGTGGGGCTGGCGTGGGTAAAG 245437
|||| || || || ||||||||| |||
Sbjct 442390 TGAAGAGGGTAGGTGAGGCGTGGGTGAAG 442418
>seq1
Length=2302571
Score = 183 bits (202), Expect = 6e-41
Identities = 362/519 (70%), Gaps = 15/519 (3%)
Strand=Plus/Plus
Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACG-CAAC 42691
|| |||||| || ||||| |||||||| || ||||||| | || | | | | |
Sbjct 1624745 CCTTGCATCCGTAAAAAGGCCGACTGGGCCATCCGCTGGATCCA-AGACAAGGAGTCTAG 1624803
Query 42692 GTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTT 42751
|||| | | | |||| ||||| |||| |||||||||||||||||| || || ||
Sbjct 1624804 CTTCGCCCAACGATTGGTTGCCTTCGCCGCTGTCGAGGGCATCTTCTTCAGTGGTGCATT 1624863
Query 42752 CGCCTCCATCTTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACG 42810
||| |||||||| ||||||||| || || || |||||||| || |||||||| ||||
Sbjct 1624864 CGCGTCCATCTTTTGGCTCAAGAAGCGCGGCCTC-ATGCCCGGGCTTACCTTCTCAAACG 1624922
Query 42811 AACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCC 42870
||||||| | | |||||||| |||| | |||||||| ||||| ||| ||| |
Sbjct 1624923 AACTCATATCCCGTGACGAGGGTTTGCACACCGACTTTGCATGCCTGCTGCACTC---TC 1624979
Query 42871 ACCTCAGGCACA-AGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAG 42929
| |||| ||| | ||| | ||| | ||| | |||||||| || |||||
Sbjct 1624980 ATCTCAAGCAAAGAGCAAGC-AAGCAAATCATCCAAGAAATCATCACCGATGCCGTCACC 1625038
Query 42930 ATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTG-TCCCTGGTCGGCATGAACCACGA 42988
|| ||| | || ||||| ||| || | ||| ||||| | || ||||||||||| |
Sbjct 1625039 ATTGAGCAAGATTTCCTGACGGAGGCTCTG-CCGTGCGCTCTTCTCGGCATGAACTCCAC 1625097
Query 42989 CCTCATG-TGCAAGTACATCCAGTACGTCGCCGACCATCTCCT-GTGCCAGATGGGTCTC 43046
|| ||| |||| |||||| | | ||| ||||||| || | || | ||| |
Sbjct 1625098 ACTGATGAAGCAA-TACATCGAATTCGTTGCCGACCGCCTGTTGGTTGCTCTCGGGAATG 1625156
Query 43047 AGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGC 43106
| | | ||||| || || || || || ||||||||||| ||||| ||| |||
Sbjct 1625157 AAAAG-GTGTACAAGACAGCGAATCCGTTTGATTTTATGGAGAATATCTCCCTGGGTGGC 1625215
Query 43107 AAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145
|||||||||||||| |||||||| || | || ||||||
Sbjct 1625216 AAGACCAACTTTTTTGAGAAGCGAGTTGGTGAATACCAG 1625254
Score = 107 bits (118), Expect = 4e-18
Identities = 220/324 (68%), Gaps = 5/324 (2%)
Strand=Plus/Plus
Query 42309 ATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGAC 42368
|||||||||||||| || || |||||| ||||| ||||| |||||| |||||||
Sbjct 1624352 ATGTACAAGAAGGCTGAGGCTTCTTTCTGGACAGCCGAAGAGATAGACCTGTCCAAGGAT 1624411
Query 42369 ACGGCCGGCTGGGAGTCACTGTCTGA--GA--ACGAAAAGTTTTTCCTCAAAAACATACT 42424
| || || ||| | | | |||| || | ||||||| |||| | |||| |
Sbjct 1624412 TTGCACGACT-GGAATAATCGCCTGAACGACGATGAAAAGTATTTCATTTCTCACATCTT 1624470
Query 42425 GGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGAA 42484
||| ||||| || ||||| || ||||| ||||| || ||||||| ||||||
Sbjct 1624471 GGCATTCTTTGCTGCCTCGGATGGCATCGTCAACGAAAACCTGGTTGAGCGGTTCAGCGG 1624530
Query 42485 AGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGT 42544
||||||||| ||| || || || |||||||| |||||||| || ||||| |
Sbjct 1624531 CGAGGTGCAGGTTCCTGAAGCCCGTTGTTTCTACGGGTTCCAGATCATGATGGAGAATAT 1624590
Query 42545 GCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGTAA 42604
|| || ||| ||| | | || || ||||||| ||| ||| | || |||| ||
Sbjct 1624591 CCATTCCGAGACGTATTCTTTATTGATCGACACGTATATCAAGGAGCACGCGCAGCGAAA 1624650
Query 42605 CGGGCTGTTCAAGGCCATGGAGAC 42628
|| ||||| ||||| || ||
Sbjct 1624651 TTACCTCTTCAATGCCATTGAAAC 1624674
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 944333899896240
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