Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09]
449 sequences; 39,397,682 total letters
Query= NC_009333.1
Length=137969
Score E
Sequences producing significant alignments: (Bits) Value
seq23 159 3e-34
>seq23
Length=560556
Score = 159 bits (176), Expect = 3e-34
Identities = 262/376 (70%), Gaps = 4/376 (1%)
Strand=Plus/Minus
Query 20372 AACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCACACATA 20431
|||| ||| || ||||| |||||||| | || |||| || ||||||||| | |||
Sbjct 480167 AACACGTGGCAAGGCGGCAGCGCCATGAGGTGCAGGTCCCGCGCGTTCCACGCGCTCATG 480108
Query 20432 ATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATCCACAATGTACGACAATTGGTCA 20491
||||| || | |||| ||| | | || | || | | || | | |||||
Sbjct 480107 ATGATCCTGCGGTCGTACGGCCTGGTCTTGAGCTTGTCGATGACGTCGGCGAGCTGGTCG 480048
Query 20492 AACCCCTGGCCTGTATAGTCAGCATCCGCGTCCACGTACGCCGCCCCAAAGTGCCTCCAC 20551
| ||||| ||| || ||||| | | |||||||||||| | || |||||||||| ||||
Sbjct 480047 ACCCCCTTGCCCGTGTAGTCCGTCTTGGCGTCCACGTACTCTGCGCCAAAGTGCCGCCAC 479988
Query 20552 TGGAAACCGTAAACAGGTCCCAAATCCCCCTCCCTTCTGTGCGCCAGGCCGCGCCCGGCC 20611
||||| ||||| || || || | || |||||| | ||||| |||||| | | | |
Sbjct 479987 TGGAAGCCGTAGACGGGGCCGAGGTCGCCCTCCTCGCGGTGCGTCAGGCCCAGGCTGTCG 479928
Query 20612 AGGAACTCCCTGGAGCCATTTTTGTCCCATATCTTGACTCC--TGTTCTTGAAAGCTCCC 20669
|||||||| | || || || ||||||||||||||| || || ||| || |||
Sbjct 479927 AGGAACTCGCGCGACCCGTTGCCGTCCCATATCTTGACGCCGACGTCGCTGAGAG--CCC 479870
Query 20670 TGGAGTCAGTACTCCCCTTCAGAAACCAAAGCAGCTCTTGCACTACGCCTCGCCAAAACA 20729
|||||| || | |||| | ||||| |||||||| || ||| | ||| |||||
Sbjct 479869 GGGAGTCGGTGTTGCCCTCGATGAACCACAGCAGCTCGGCGACGACGGCGCGCAGAAACA 479810
Query 20730 CCCGCTTTGTGGTTAG 20745
||||||| ||||| ||
Sbjct 479809 CCCGCTTCGTGGTGAG 479794
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 441370322795160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |