Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09] 449 sequences; 39,397,682 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq1 89.7 1e-12 >seq1 Length=2302571 Score = 89.7 bits (98), Expect = 1e-12 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 243544 GACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAA 243603 || ||| | || ||| ||| | ||||||||||| ||| ||| || ||||||||| Sbjct 1625060 GAGGCTCTGCCGTGCGCTCTTCTCGGCATGAACTCCACACTGATGAAGCAATACATCGAA 1625119 Query 243604 TTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAAC 243663 ||||| ||||||||| | || | || || || |||| || |||||||| | ||| Sbjct 1625120 TTCGTTGCCGACCGCCTGTTGGTTGCTCTCGGGAATGAAAAGGTGTACAAGACAGCGAAT 1625179 Query 243664 CCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGT 243723 || |||| ||||||||| || || || || || || ||||| || || ||||| Sbjct 1625180 CCGTTTGATTTTATGGAGAATATCTCCCTGGGTGGCAAGACCAACTTTTTTGAGAAGCGA 1625239 Query 243724 GTCAGTGATTATCA-ACGCCCTGGTGTGATG 243753 || |||| || || | | || ||||| ||| Sbjct 1625240 GTTGGTGAATACCAGAAGGCC-GGTGTCATG 1625269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102873655338150