Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09] 449 sequences; 39,397,682 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq2 230 3e-55 seq1 95.1 1e-14 >seq2 Length=1075658 Score = 230 bits (254), Expect = 3e-55 Identities = 1163/1841 (63%), Gaps = 27/1841 (1%) Strand=Plus/Plus Query 113558 TCAAGGCTGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTC 113617 |||| | ||||||| ||||| ||| ||| | | || | ||||||||| || ||| Sbjct 440748 TCAACGGTGAACTGGATGGGGGCCGCGGCGGCTTGCGTGCGCAAGTAGTACATGCCAGTC 440807 Query 113618 TTGAGCCCCTGCTTCCA---GGCATACATATGCATCGAGGACAACTTGGAGAGTGTTGGA 113674 ||||| ||| ||||||| |||| | |||||||| | | |||| | ||||| Sbjct 440808 TTGAGACCCAGCTTCCACCCGGCAAAG---TGCATCGACGTGATCTTGCCCATGGTTGGG 440864 Query 113675 CTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCACGATCCGCCGCC 113734 | |||| | ||| | | ||||| || ||||| ||| || || || || ||| Sbjct 440865 TCCTTCATGTGAATGTTGAGAGACTGGGACTGGTCGATAAAGGCACCGCGGTCGGCGGCC 440924 Query 113735 ATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAGGTTCTTAATATCA 113794 || | | ||||| | | |||||||| || || |||| || ||| | || Sbjct 440925 ATCTGCACCACATGACGCTGCGAAATTTCCCAGACCGTCTTGTACAGAGCCTTTACCTCG 440984 Query 113795 TCTGGGATATCCACGATATTTTGGATGGAGCCACCCGCCTTGACCATGAGATCCTTCATA 113854 | || || | ||| || ||||| ||||| | | | ||| ||| |||||| Sbjct 440985 CCGGGAATGTTGGGGATGTTCTGGATCGAGCCGTTCTCGGCAATGATGCGATTCTTCATG 441044 Query 113855 TCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGAG--ATGCTTATTGACAACAA 113912 | | |||||| ||||| || | |||||||| | || ||| | |||| || Sbjct 441045 GCGTCTGACCACAGACCCATGTCGACGAGATCCTTGAGAAGCCATGGGT--TGACGACCT 441102 Query 113913 CAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACT 113972 ||||| ||||| ||| ||||| | | || || |||| |||||| ||||| ||||||| Sbjct 441103 GGAACTCGCCCGCCAGGACGCGTCGCTGGTAAATGTTGGACGTGTAGGGCTCGAAGCACT 441162 Query 113973 CATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGT 114032 | ||||| |||| || || | ||||| || ||||||||||| || | || || || Sbjct 441163 CGTTGTTGCCCAGAATCTGCGACGTGGACGCCGTGGGCATGGGCGCGAGCAGCAGCGAGT 441222 Query 114033 TACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGGGCGTCCCAGTC---GTAGTTGAGCT 114089 | || | || | ||| | || | |||||||||| ||||| || ||| | | Sbjct 441223 TGCGAATCCCGTGCTCCTTGATCTGCTCCTTGAGGGAATCCCACTCCCACAAGTCGGAC- 441281 Query 114090 TTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGAGGCTGGCGATCCCTCAA 114149 | | | | | |||||| |||||||| ||||| |||| ||||| || ||||||| | Sbjct 441282 --GGCGTCACGTTCCACATGTCAAACTGCAGGATGCCTTCAGAGGCCGGAGATCCCTTGA 441339 Query 114150 ATGTCTCGTATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGAT 114209 | || ||| || ||||| ||| |||| || |||| | ||| ||||| | Sbjct 441340 ACGTGGAGTAGGGACCCTCCTCCTTGGCCAGCTCCACCGACGCCGTCAAGGCGGCGTGGT 441399 Query 114210 ACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTC 114269 | || ||||||||||| | |||| | |||||| || ||||| | | | Sbjct 441400 AGATGGTCTCAAAAATCTGCTTGTTCAGCTCGCGAGCCTCGGGAGACTCAAAGGGCATGC 441459 Query 114270 GGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCA 114329 | | || || | || || | ||||| ||||||| ||||| || ||||| | || Sbjct 441460 GAAGCGCAAGGAAGGCGTCGGCCAAGCCTTGAACACCGACACCAATGGGACGATGCCGCA 441519 Query 114330 TATTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGAT 114389 | || || || || | ||||| || || ||||| | | | || |||| Sbjct 441520 TGTTGCTGTTGCGTGCTTCTTGGACGGGGTAGTGGTTGACGTCGATGATCTTGTTGAGAT 441579 Query 114390 TTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTT 114449 || | || || |||| || || ||||||| | | || | ||| || | Sbjct 441580 TTCGGACAACCACGCGGGTGACGTCGTGCAGCTTTTGGAAGTCGTACTTGCCTTGGTCGT 441639 Query 114450 CATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTAT 114509 | ||| | || ||||| | || || || || || || | ||| || Sbjct 441640 AGTCCACAAAGGCGGGCAGGGCAAGGGAGGCAAGGTTGCAGACGGCAACCTCGTCGGGGG 441699 Query 114510 CAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTT 114569 | | |||||| ||||| || || || | || || || |||||| ||||||||||| | Sbjct 441700 CCGAGTACTCGATAATCTCGGTGCAGAGGTTGGAGCTGCGAATGGTTCCCAAGTTCTTCT 441759 Query 114570 GATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTT 114629 | || ||| |||| || ||||||||| ||||| | || | || ||||| || | Sbjct 441760 GGTTGCTCTTCCTGTTGCAATGATCCTTGTACAGCATAAAGGGGTTGCCAGTCTCGGTCT 441819 Query 114630 GGGACTTGAGAATAGCCTTCCAGA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCC 114688 | | || ||| || | | ||| | | || | ||| | | || | | | || || Sbjct 441820 GAGCCTCGAGGATCGAGTACCACAGCTTCTG-GGCGCGGATTGTCTTGCGGCCACGGCCT 441878 Query 114689 TCCTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCT 114748 || |||||||||| || | || |||||||| || || | || | |||||| Sbjct 441879 TCGCGCTCGTACTTTTCATACAAAGCCTCAAACTCGTCGCCGTAGCAGTCGGCGAGCCCA 441938 Query 114749 GGTGCCTT-ATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAA 114807 || || || | ||||| | ||| | ||| | ||| || ||| |||||||||||||| Sbjct 441939 GG-GCATTCGTTGGGGCACATGAGGGTCCAGTCGCCATTCTTCTCGACACGCTTCATGAA 441997 Query 114808 GAGGTCTGGGATCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTG 114867 |||||| |||||||| || || |||||| || ||| ||| |||| || | || || Sbjct 441998 GAGGTCGGGGATCCACAGCGCAAGGAAGAGGTCGCGAGCGCGGACTTCCTCCTTGCCGTG 442057 Query 114868 ATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGC 114927 || | | || | || || | || ||| |||||||| || |||||||| | || Sbjct 442058 GTTCTTTCTGAGATCAAGGAATTCAAAGACATCGGCGTGCCAGGGCTCCAGGTAGATGGC 442117 Query 114928 GATTGACCCCTTACG---ACGACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATAC 114984 || | ||| || || | |||| || || || || ||| || || || Sbjct 442118 GAAGGCGCCCGGTCGCTTGTTGCCGCCTTGGTCGACGTATCTGGCAGTGTTGTTGAAGAC 442177 Query 114985 GCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTATT 115044 || ||||| |||| || || | || ||| || || || ||| || | Sbjct 442178 TCGCAGCATGGGAACGACGCCGTTCGAGGTGCCGTTGGTGCCGGCAATGTAGGATCCGGT 442237 Query 115045 GGCTCTGACATCATGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCA 115104 || | | |||| || || || ||||| || ||| || || || ||||| Sbjct 442238 AGCACGAATGCGGTGGACGTTCAGGCCGATACCGCCGGCCATTTTAGAAATCATGGCGCA 442297 Query 115105 CTCCGTGAGACTGCCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCA 115164 | ||||| || ||||||| || ||||| ||| |||| | ||| |||||||| Sbjct 442298 AGTCTTGAGAGTGTCGTAGATGCCCTCGATGCTGTCTTCCTTCATGTCGACGAGGAAGCA 442357 Query 115165 GCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAA 115224 || | || | || || || |||||||||||||| |||| |||||| |||| Sbjct 442358 CGAGGAAAGCTGACACTGAGGCGTGCCCGCGTTGAAGAGGGTAGGTGAGGCGTGGGTGAA 442417 Query 115225 CA--TACCTTGGGACATCTTATCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGA 115282 | | || |||||| | |||||| |||| |||| ||||| || || Sbjct 442418 GAATTTACT--GGACATGAGGTTGTAGGTTTCCAGGACGCGCTCAATGTTGTCTCCCCAG 442475 Query 115283 ATACCGATCGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGC 115342 || |||| | || ||||| | ||||| || ||| ||| | | | || || ||| Sbjct 442476 ATGCCGACAGCAACACGCATGATCATGTGCTGAGGTCGTTCGACAATCTTGCCGTCCAGC 442535 Query 115343 CTCTGGAGGTAACTCTTCTCCAAGGTCTTGAGACCAAAATA 115383 || |||| || ||||| ||||||| |||||| || Sbjct 442536 TTCAGGAGATACGATCGCTCCAGCGTCTTGAAACCAAAGTA 442576 >seq1 Length=2302571 Score = 95.1 bits (104), Expect = 1e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 126047 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCT 126106 ||||| || ||| | ||||||||||||||| |||||||| || |||||| || || Sbjct 1624962 GCAAAGTCGGTGTGCAAACCCTCGTCACGGGATATGAGTTCGTTTGAGAAGGTAAGCCCG 1624903 Query 126107 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATT 126166 |||||||| || |||||||| | ||| || || | |||| ||| ||||||||| Sbjct 1624902 GGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGACGCGAATGCACCACTGAAGAAGATG 1624843 Query 126167 CCCTCCACACACGCGAACGCAA 126188 ||||| ||| ||||| |||| Sbjct 1624842 CCCTCGACAGCGGCGAAGGCAA 1624821 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597350247352920