Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09] 449 sequences; 39,397,682 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq56 140 3e-28 seq67 93.3 4e-14 seq13 82.4 8e-11 >seq56 Length=194926 Score = 140 bits (154), Expect = 3e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | |||||| || |||||||||||||| || || | ||| | | | || Sbjct 70065 AGCACCAGGTGCAACGTCGACTCCTTTTGAATGTTGTAGTCGGCTAGGGTTCTCCCATCC 70006 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 ||||||||||| || ||| | ||||| |||||||| || |||||||| || || || ||| Sbjct 70005 TCAAGCTGCTTACCAGCAAAGATGAGTCGCTGCTGATCAGGAGGAATGCCCTCCTTGTCT 69946 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || ||||| ||| ||| || | |||||| | ||||| || | || | |||| Sbjct 69945 TGAATTTTCGACTTCACATTATCAATGGTATCAGACGACTCCACCTCGAGCGTGATGGTC 69886 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || ||||||| || || |||||||| ||||| Sbjct 69885 TTCCCGGTCAGCGTCTTGACGAAAATCTGCAT 69854 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 |||||| |||| | ||| || ||||||| || ||||| || || |||||||| || || Sbjct 69397 ACCGCCACGCAGGCGAAGAACCAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGC 69338 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | |||||| | ||||| ||||| || || ||| | || | |||||||||||||| || Sbjct 69337 CAGGGTGCGGCCATCTTCGAGCTGTTTACCAGCAAAGATCAAGCGCTGCTGGTCGGGCGG 69278 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || || || || ||||| ||||| ||| ||| || | || ||| | ||||| Sbjct 69277 GATGCCCTCCTTGTCTTGAATTTTCGACTTGACATTGTCGATGGTGTCAGAAGACTCCAC 69218 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | |||||| ||||| | || |||||||| |||||||| Sbjct 69217 CTCGAGGGTGATGGTCTTTCCGGTGAGGGTCTTTACGAAGATTTGCAT 69170 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 |||||||||| | || || ||||| | || ||||| || || |||||||| || || Sbjct 69624 CCGCCGCGCAGGCGCAGAACGAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCC 69565 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | |||||| ||||||| || || ||||| ||| | || | || ||||||||||| || Sbjct 69564 AGGGTGCGGCCGTCTTCGAGTTGTTTGCCAGCAAAGATCAAGCGTTGCTGGTCGGGCGGG 69505 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || || || ||||| ||||| ||| ||| || | || || | ||||| Sbjct 69504 ATGCCCTCCTTGTCTTGGATTTTCGCCTTGACATTGTCGATGGTGTCGGAAGACTCCACC 69445 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | |||||| || || | || || ||||| || ||||| Sbjct 69444 TCCAGGGTGATGGTCTTCCCAGTGAGGGTCTTGACGAAGATCTGCAT 69398 Score = 100 bits (110), Expect = 3e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 |||||||| | | ||||| || || | || || || || || |||||||| || || Sbjct 69852 CCGCCGCGGAGACGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCC 69793 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || || |||| || ||||||||||||||| | || || |||||||||||||| ||| Sbjct 69792 AATGTTCGTCCGTCCTCGAGCTGCTTGCCGGCAAAGATAAGTCGCTGCTGGTCGGGGGGA 69733 Query 64337 ATTCCTTCTTTTTCTTGTATTTT 64359 || ||||| || ||||| || || Sbjct 69732 ATCCCTTCCTTGTCTTGAATCTT 69710 >seq67 Length=171618 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 64253 TCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAA 64312 || || || |||||||| || || | |||||| | || || ||||||||||| ||| | Sbjct 155723 TCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAG 155782 Query 64313 ATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACC 64372 ||||| |||||||||||||| || || || || || || || || || ||| ||| Sbjct 155783 ATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTG 155842 Query 64373 TCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACG 64432 || | || || | ||||| || | || | |||||| || || | || || ||| Sbjct 155843 TCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTCCCCGTGAGGGTCTTGACG 155902 Query 64433 AAAATTTGCATTTT 64446 ||||| ||||| || Sbjct 155903 AAAATCTGCATCTT 155916 >seq13 Length=702126 Score = 82.4 bits (90), Expect = 8e-11 Identities = 126/180 (70%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 64256 TTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATG 64315 || ||||||||||| || || | ||| || | || || ||||||||||| ||| | || Sbjct 289255 TTCTGAATGTTGTAGTCGGCCAGGGTTCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATC 289196 Query 64316 AGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCC 64375 | ||||||||||||||||| || || || || || || || || ||| ||| || Sbjct 289195 AAACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 289136 Query 64376 ACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAA 64435 | || || || || || || | || | ||||||||| |||| || || || ||| Sbjct 289135 ATCGTGTCGGAGGACTCGACCTCGAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAA 289076 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499641995743560