Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09]
449 sequences; 39,397,682 total letters
Query= NC_011183.1
Length=154641
Score E
Sequences producing significant alignments: (Bits) Value
seq2 275 6e-69
>seq2
Length=1075658
Score = 275 bits (304), Expect = 6e-69
Identities = 1068/1659 (64%), Gaps = 32/1659 (2%)
Strand=Plus/Minus
Query 93724 TACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGGGTTTCC 93783
||||||| ||||| || |||||| ||||| ||||| ||| |||| |||| | || |
Sbjct 442576 TACTTTGGTTTCAAGACGCTGGAGCGATCGTATCTCCTGAAGCTGGACGGCAAGATTGTC 442517
Query 93784 GAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGACATGCCG 93843
|| ||||| || || || | ||||| || || |||| || || || |||| |
Sbjct 442516 GAACGACCTCAGCACATGATCATGCGTGTTGCTGTCGGCATCTGGGGAGACAACATTGAG 442457
Query 93844 AATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGGCCACCCCGACC 93903
|| || | | || |||| || | ||| ||| | || |||
Sbjct 442456 CGCGTCCTGGAAACCTACAACCTCATGTCCAGTAAATTCTTCACCCACGCCTCACCTACC 442397
Query 93904 CTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGAT-GACGAACAA 93962
|| ||||||||||| || || | ||| | || ||||| ||||| | ||| | ||
Sbjct 442396 CTCTTCAACGCGGGCACGCCTCAGTGTCAGCTTTCCTCGTGCTTCCTCGTCGAC-ATGAA 442338
Query 93963 GGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTCAAAATA 94022
|| ||| |||| || || | ||||| |||||| || || | || || |||
Sbjct 442337 GGAAGACAGCATCGAGGGCATCTACGACACTCTCAAGACTTGCGCCATGATTTCTAAAAT 442278
Query 94023 CGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACATCCGCGG 94082
|| || || ||||| | | |||||| | | ||||| | || |||||||| |||
Sbjct 442277 GGCCGGCGGTATCGGCCTGAACGTCCACCGCATTCGTGCTACCGGATCCTACATTGCCGG 442218
Query 94083 TACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCGGCGCG 94142
||||| |||||||| |||||| |||| || ||||| || |||||||||||| | || |
Sbjct 442217 CACCAACGGCACCTCGAACGGCGTCGTTCCCATGCTGCGAGTCTTCAACAACACTGCCAG 442158
Query 94143 CTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCCTG 94202
||||| ||||| || || | | | ||| | ||||| |||| || ||||||||
Sbjct 442157 ATACGTCGACCAAGGCGGCAACAAGCGACCGGGCGCCTTCGCCATCTACCTGGAGCCCTG 442098
Query 94203 GCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCTGGAGAG 94262
|||||| || || | ||| | || || |||||||||||||||| || | |
Sbjct 442097 GCACGCCGATGTCTTTGAATTCCTTGATCTCAGAAAGAACCACGGCAAGGAGGAAGTCCG 442038
Query 94263 GGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCGTCGAGAA 94322
|| | ||||||||| || || ||| | || ||||| || ||||| || ||||||||
Sbjct 442037 CGCTCGCGACCTCTTCCTTGCGCTGTGGATCCCCGACCTCTTCATGAAGCGTGTCGAGAA 441978
Query 94323 AAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGAC-GTTTGTG 94381
|| || ||||| || | || ||||| ||||| || || || ||||| | | |
Sbjct 441977 GAATGGCGACTGGACCCTCATGTGCCCCAACGAATGCCCTGGGCTCGCCGACTGCTACGG 441918
Query 94382 GATCGCGTTTTGAAGACTTGTATGCTCGTTACGA-ATCGCAGGGCAAGGCCAGGAAGGTT 94440
|| | ||||| | ||||||| ||||| || ||| | |||| | |||
Sbjct 441917 CGACGAG-TTTGAGGCTTTGTATGAAAAGTACGAGCGCGAAGGCCGTGGCC-GCAAGACA 441860
Query 94441 ATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGGGTACGCCC 94500
|| || |||||||||| | |||| | || | ||| ||||| || | |||
Sbjct 441859 ATCCGCGCCCAGAAGCTGTGGTACTCGATCCTCGAGGCTCAGACCGAGACTGGCAACCCC 441800
Query 94501 TACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCGGGGTGATC 94560
| || ||| |||||| | |||| ||| ||||||| || || | || ||
Sbjct 441799 TTTATGCTGTACAAGGATCATTGCAACAGGAAGAGCAACCAGAAGAACTTGGGAACCATT 441740
Query 94561 AAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAGATTGCTGTG 94620
||||| || || |||||||||||| ||||||| | | || |||||| |||| ||
Sbjct 441739 CGCAGCTCCAACCTCTGCACCGAGATTATCGAGTACTCGGCCCCCGACGAGGTTGCCGTC 441680
Query 94621 TGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTACACGTCTACTGCT 94680
|| ||||| | |||| | |||| || | || ||| | || ||| | | ||
Sbjct 441679 TGCAACCTTGCCTCCCTTGCCCTGCCCGCCTTTGTG------GACT--ACGACCAAGGC- 441629
Query 94681 TCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGGATGGTCTTGAACCTGAACAGG 94740
|| ||| | | |||| || || | | | | ||| || || |||| |
Sbjct 441628 AAGTACGACTTCCAAAAGCTGCACGACGTCACCCGCGTGGTTGTCCGAAATCTCAACAAG 441569
Query 94741 GTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAAACCTGAAGCATCGG 94800
| |||||| ||| ||||||||||| || || ||| ||| || ||||||
Sbjct 441568 ATCATCGACGTCAACCACTACCCCGTCCAAGAAGCACGCAACAGCAACATGCGGCATCGT 441509
Query 94801 CCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGATGCGTCTGCCCTAC 94860
||||| || |||| || || || || || ||||| | | | | || ||||||
Sbjct 441508 CCCATTGGTGTCGGTGTTCAAGGCTTGGCCGACGCCTTCCTTGCGCTTCGCATGCCCTTT 441449
Query 94861 GACTCTGTCGACGC-GGCGGGTTTGAATTTGAACATATTCGAAAGCATTTATTACGGGGC 94919
|| ||| ||| || ||| | |||| | | || || || | ||| || ||| ||
Sbjct 441448 GAGTCTCCCGAGGCTCGCGAG-CTGAACAAGCAGATTTTTGAGACCATCTACCACGCCGC 441390
Query 94920 CATGAAACAATCCGTCCACTTGGCCAGATCGGACGGCGGGCCACACGAATCGTTCCGCGG 94979
| ||| || || | |||||| ||| | || || || ||||| ||
Sbjct 441389 CTTGACGGCGTCGGTGGAGCTGGCCA---AGGAGGAGGGTCCCTACTCCACGTTCAAGGG 441333
Query 94980 AT---CGCCCTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGGTGTGAAGCCCTCGGG 95036
|| || ||| ||| ||||| | ||||| ||| | ||| |||| ||| || |
Sbjct 441332 ATCTCCGGCCTCTGAA---GGCATCCTGCAGTTTGACATGTGGAACGTGACGCCGTCCGA 441276
Query 95037 TCTGTACGACTGGGA--AGCTCTACGCGCTGATGTTATCAAACACGGTGTGAAAAACGCG 95094
||| || ||||| ||| | | || || | | | ||||| | ||| ||
Sbjct 441275 CTTGTGGGAGTGGGATTCCCTCAAGGAGCAGA--TCAAGGAGCACGGGATTCGCAACTCG 441218
Query 95095 CTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAACGAGTCG 95154
||||| | || |||||||||||||| |||||| ||||||| || |||||||||||||
Sbjct 441217 CTGCTGCTCGCGCCCATGCCCACGGCGTCCACGTCGCAGATTCTGGGCAACAACGAGTGC 441158
Query 95155 TTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTCCCCGTC 95214
||||| |||| ||| |||||| | ||| | | || || || || || || |||| |||
Sbjct 441157 TTCGAGCCCTACACGTCCAACATTTACCAGCGACGCGTCCTGGCGGGCGAGTTCCAGGTC 441098
Query 95215 ATCAACAAGCACCTCCTACGGGACCT-GACGTCTCTGGGTGTGTGGGGTGACAAGGTCAA 95273
||||| || || ||| || | || | ||||| ||||| ||| | ||
Sbjct 441097 GTCAACCCATGGCTTCTCAAGGATCTCGTCGAC-ATGGGTCTGTGGTCAGACGCCATGAA 441039
Query 95274 GAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACATCCCGCAAATACCGGAGGACAT 95333
||| | | | || |||||||| ||||||||||||| | || || | || |
Sbjct 441038 GAATCGCATCATTGCCGAGAACGGCTCGATCCAGAACATCCCCAACATTCCCGGCGAGGT 440979
Query 95334 CAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCG 95372
||||| || |||||||| || ||||| || |||||||
Sbjct 440978 AAAGGCTCTGTACAAGACGGTCTGGGAAATTTCGCAGCG 440940
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 494720423366040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |