Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09] 449 sequences; 39,397,682 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq2 275 6e-69 >seq2 Length=1075658 Score = 275 bits (304), Expect = 6e-69 Identities = 1068/1659 (64%), Gaps = 32/1659 (2%) Strand=Plus/Minus Query 93724 TACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGGGTTTCC 93783 ||||||| ||||| || |||||| ||||| ||||| ||| |||| |||| | || | Sbjct 442576 TACTTTGGTTTCAAGACGCTGGAGCGATCGTATCTCCTGAAGCTGGACGGCAAGATTGTC 442517 Query 93784 GAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGACATGCCG 93843 || ||||| || || || | ||||| || || |||| || || || |||| | Sbjct 442516 GAACGACCTCAGCACATGATCATGCGTGTTGCTGTCGGCATCTGGGGAGACAACATTGAG 442457 Query 93844 AATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGGCCACCCCGACC 93903 || || | | || |||| || | ||| ||| | || ||| Sbjct 442456 CGCGTCCTGGAAACCTACAACCTCATGTCCAGTAAATTCTTCACCCACGCCTCACCTACC 442397 Query 93904 CTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGAT-GACGAACAA 93962 || ||||||||||| || || | ||| | || ||||| ||||| | ||| | || Sbjct 442396 CTCTTCAACGCGGGCACGCCTCAGTGTCAGCTTTCCTCGTGCTTCCTCGTCGAC-ATGAA 442338 Query 93963 GGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTCAAAATA 94022 || ||| |||| || || | ||||| |||||| || || | || || ||| Sbjct 442337 GGAAGACAGCATCGAGGGCATCTACGACACTCTCAAGACTTGCGCCATGATTTCTAAAAT 442278 Query 94023 CGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACATCCGCGG 94082 || || || ||||| | | |||||| | | ||||| | || |||||||| ||| Sbjct 442277 GGCCGGCGGTATCGGCCTGAACGTCCACCGCATTCGTGCTACCGGATCCTACATTGCCGG 442218 Query 94083 TACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCGGCGCG 94142 ||||| |||||||| |||||| |||| || ||||| || |||||||||||| | || | Sbjct 442217 CACCAACGGCACCTCGAACGGCGTCGTTCCCATGCTGCGAGTCTTCAACAACACTGCCAG 442158 Query 94143 CTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCCTG 94202 ||||| ||||| || || | | | ||| | ||||| |||| || |||||||| Sbjct 442157 ATACGTCGACCAAGGCGGCAACAAGCGACCGGGCGCCTTCGCCATCTACCTGGAGCCCTG 442098 Query 94203 GCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCTGGAGAG 94262 |||||| || || | ||| | || || |||||||||||||||| || | | Sbjct 442097 GCACGCCGATGTCTTTGAATTCCTTGATCTCAGAAAGAACCACGGCAAGGAGGAAGTCCG 442038 Query 94263 GGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCGTCGAGAA 94322 || | ||||||||| || || ||| | || ||||| || ||||| || |||||||| Sbjct 442037 CGCTCGCGACCTCTTCCTTGCGCTGTGGATCCCCGACCTCTTCATGAAGCGTGTCGAGAA 441978 Query 94323 AAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGAC-GTTTGTG 94381 || || ||||| || | || ||||| ||||| || || || ||||| | | | Sbjct 441977 GAATGGCGACTGGACCCTCATGTGCCCCAACGAATGCCCTGGGCTCGCCGACTGCTACGG 441918 Query 94382 GATCGCGTTTTGAAGACTTGTATGCTCGTTACGA-ATCGCAGGGCAAGGCCAGGAAGGTT 94440 || | ||||| | ||||||| ||||| || ||| | |||| | ||| Sbjct 441917 CGACGAG-TTTGAGGCTTTGTATGAAAAGTACGAGCGCGAAGGCCGTGGCC-GCAAGACA 441860 Query 94441 ATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGGGTACGCCC 94500 || || |||||||||| | |||| | || | ||| ||||| || | ||| Sbjct 441859 ATCCGCGCCCAGAAGCTGTGGTACTCGATCCTCGAGGCTCAGACCGAGACTGGCAACCCC 441800 Query 94501 TACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCGGGGTGATC 94560 | || ||| |||||| | |||| ||| ||||||| || || | || || Sbjct 441799 TTTATGCTGTACAAGGATCATTGCAACAGGAAGAGCAACCAGAAGAACTTGGGAACCATT 441740 Query 94561 AAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAGATTGCTGTG 94620 ||||| || || |||||||||||| ||||||| | | || |||||| |||| || Sbjct 441739 CGCAGCTCCAACCTCTGCACCGAGATTATCGAGTACTCGGCCCCCGACGAGGTTGCCGTC 441680 Query 94621 TGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTACACGTCTACTGCT 94680 || ||||| | |||| | |||| || | || ||| | || ||| | | || Sbjct 441679 TGCAACCTTGCCTCCCTTGCCCTGCCCGCCTTTGTG------GACT--ACGACCAAGGC- 441629 Query 94681 TCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGGATGGTCTTGAACCTGAACAGG 94740 || ||| | | |||| || || | | | | ||| || || |||| | Sbjct 441628 AAGTACGACTTCCAAAAGCTGCACGACGTCACCCGCGTGGTTGTCCGAAATCTCAACAAG 441569 Query 94741 GTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAAACCTGAAGCATCGG 94800 | |||||| ||| ||||||||||| || || ||| ||| || |||||| Sbjct 441568 ATCATCGACGTCAACCACTACCCCGTCCAAGAAGCACGCAACAGCAACATGCGGCATCGT 441509 Query 94801 CCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGATGCGTCTGCCCTAC 94860 ||||| || |||| || || || || || ||||| | | | | || |||||| Sbjct 441508 CCCATTGGTGTCGGTGTTCAAGGCTTGGCCGACGCCTTCCTTGCGCTTCGCATGCCCTTT 441449 Query 94861 GACTCTGTCGACGC-GGCGGGTTTGAATTTGAACATATTCGAAAGCATTTATTACGGGGC 94919 || ||| ||| || ||| | |||| | | || || || | ||| || ||| || Sbjct 441448 GAGTCTCCCGAGGCTCGCGAG-CTGAACAAGCAGATTTTTGAGACCATCTACCACGCCGC 441390 Query 94920 CATGAAACAATCCGTCCACTTGGCCAGATCGGACGGCGGGCCACACGAATCGTTCCGCGG 94979 | ||| || || | |||||| ||| | || || || ||||| || Sbjct 441389 CTTGACGGCGTCGGTGGAGCTGGCCA---AGGAGGAGGGTCCCTACTCCACGTTCAAGGG 441333 Query 94980 AT---CGCCCTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGGTGTGAAGCCCTCGGG 95036 || || ||| ||| ||||| | ||||| ||| | ||| |||| ||| || | Sbjct 441332 ATCTCCGGCCTCTGAA---GGCATCCTGCAGTTTGACATGTGGAACGTGACGCCGTCCGA 441276 Query 95037 TCTGTACGACTGGGA--AGCTCTACGCGCTGATGTTATCAAACACGGTGTGAAAAACGCG 95094 ||| || ||||| ||| | | || || | | | ||||| | ||| || Sbjct 441275 CTTGTGGGAGTGGGATTCCCTCAAGGAGCAGA--TCAAGGAGCACGGGATTCGCAACTCG 441218 Query 95095 CTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAACGAGTCG 95154 ||||| | || |||||||||||||| |||||| ||||||| || ||||||||||||| Sbjct 441217 CTGCTGCTCGCGCCCATGCCCACGGCGTCCACGTCGCAGATTCTGGGCAACAACGAGTGC 441158 Query 95155 TTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTCCCCGTC 95214 ||||| |||| ||| |||||| | ||| | | || || || || || || |||| ||| Sbjct 441157 TTCGAGCCCTACACGTCCAACATTTACCAGCGACGCGTCCTGGCGGGCGAGTTCCAGGTC 441098 Query 95215 ATCAACAAGCACCTCCTACGGGACCT-GACGTCTCTGGGTGTGTGGGGTGACAAGGTCAA 95273 ||||| || || ||| || | || | ||||| ||||| ||| | || Sbjct 441097 GTCAACCCATGGCTTCTCAAGGATCTCGTCGAC-ATGGGTCTGTGGTCAGACGCCATGAA 441039 Query 95274 GAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACATCCCGCAAATACCGGAGGACAT 95333 ||| | | | || |||||||| ||||||||||||| | || || | || | Sbjct 441038 GAATCGCATCATTGCCGAGAACGGCTCGATCCAGAACATCCCCAACATTCCCGGCGAGGT 440979 Query 95334 CAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCG 95372 ||||| || |||||||| || ||||| || ||||||| Sbjct 440978 AAAGGCTCTGTACAAGACGGTCTGGGAAATTTCGCAGCG 440940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494720423366040