Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09] 449 sequences; 39,397,682 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq2 230 2e-55 seq56 118 1e-21 seq67 100 3e-16 seq1 96.9 3e-15 seq13 89.7 5e-13 >seq2 Length=1075658 Score = 230 bits (254), Expect = 2e-55 Identities = 986/1540 (64%), Gaps = 25/1540 (2%) Strand=Plus/Plus Query 153028 GGTTGACCACTTGAAACTCGCCCGCCAACACTCGTCTCAAATATACATTGCTAGTGAAAG 153087 ||||||| || || ||||||||||||| || |||| | || | ||| ||| | | Sbjct 441091 GGTTGACGACCTGGAACTCGCCCGCCAGGACGCGTCGCTGGTAAATGTTGGACGTGTAGG 441150 Query 153088 GTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCATGTACGCCA 153147 | || ||| | ||||| ||||| || || || | ||||| || || |||||| ||| | Sbjct 441151 GCTCGAAGCACTCGTTGTTGCCCAGAATCTGCGACGTGGACGCCGTGGGCATGGGCGCGA 441210 Query 153148 CCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCGTCCTTCAACGCCTGCCAATCCC 153207 || || || || || | |||||| | || | ||||| | | | ||| |||| Sbjct 441211 GCAGCAGCGAGTTGCGAATCCCGTGCTCCTTGATCTGCTCCTTGAGGGAATCCCACTCCC 441270 Query 153208 ACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACACTCCTCGACTGGCGGGAC 153267 ||| | ||||| ||| ||||||||||||| |||| | | ||| | ||| ||| Sbjct 441271 ACAAGTCGGACGGCGTCACGTTCCACATGTCAAACTGCAGGATGCCTTCAGAGGCCGGAG 441330 Query 153268 TGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTGGGCCAGTTCGCAGCTA-GCC-TCGAG 153325 || ||||| |||| || || | |||||| || || | | ||| || || Sbjct 441331 ATCCCTTGAACGTGGAGTAGGGACCCTCCTCCTTGGCCAGCTC-CACCGACGCCGTCAAG 441389 Query 153326 CGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCCGCTTCTTCGCTCTC 153385 ||| | | ||| ||||| || || || || || || || || || ||| Sbjct 441390 -GCGGCGTGGTAGATGGTCTCAAAAATCTGCTTGTTCAGCTCGCGAGCCTCGGGAGACTC 441448 Query 153386 GTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACCGACGCCGATGGG 153445 | |||||||| ||| | ||||||||||||| || || | |||||| || ||||| Sbjct 441449 AAAGGGCATGCGAAGCGCAAGGAAGGCGTCGGCCAAGCCTTGAACACCGACACCAATGGG 441508 Query 153446 TCGATGCTTCTCGTTGCTGCGCCTCGCG-CTCGCTATGGGATAGTGATTGCGATCGATAA 153504 |||||| | ||||||| | || || | | ||| ||||| ||| ||||| | Sbjct 441509 ACGATGCCGCATGTTGCTGTTGCGTGCTTCTTGG-ACGGGGTAGTGGTTGACGTCGATGA 441567 Query 153505 TTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTTTCTCGAAATCATAGG 153564 | |||||||| || || || ||||| || | | | || || | ||| || || Sbjct 441568 TCTTGTTGAGATTTCGGACAACCACGCGGGTGACGTCGTGCAGCTTTTGGAAGTCGTACT 441627 Query 153565 TCATTTCGTCGACGCGTACGCATCGATTCACGGCAATAGACGCCAGATTACAGACGGCCG 153624 | || |||| | || | || ||||| || || || || |||||||| Sbjct 441628 TGCCTTGGTCGTAGTCCACAAAGGCGGGCAGGGCAAGGGAGGCAAGGTTGCAGACGGCAA 441687 Query 153625 TCTCTTCGGCGTCGCTGTACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACGC 153684 ||| |||| | | ||||| | ||||||| |||||||||| || ||| | Sbjct 441688 CCTCGTCGGGGGCCGAGTACTCGATAATCTCGGTGCAGAGGTTGGAGCTGCGAATGGTTC 441747 Query 153685 CCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGC 153744 |||| || | ||| ||||| || | ||||| || ||| | ||||| | || || Sbjct 441748 CCAAGTTCTTCTGGTTGCTCTTCCTGTTGCAATGATCCTTGTACAGCATAAAGGGGTTGC 441807 Query 153745 CGGTCTCGACTTGCGTTTCGACGATAAACCTATGCAGGTCCTGCGCTCGCACCCGCTGCC 153804 | |||||| || | |||| ||| | ||| | ||| || || | || | Sbjct 441808 CAGTCTCGGTCTGAGCCTCGAGGATCGAGTACCACAGCTTCTGGGCGCGGATTGTCTTGC 441867 Query 153805 GATAGCGGCCCTCGCTCTCGTATCGCTCGTACAGTCGCTCAAACTCGTCGCCGTAGCAGT 153864 | ||||| |||| |||||| || |||| ||||||||||||||||||||||| Sbjct 441868 GGCCACGGCCTTCGCGCTCGTACTTTTCATACAAAGCCTCAAACTCGTCGCCGTAGCAGT 441927 Query 153865 CGGCGAGGCCGGGACACTGATGCGGACACATCAGCGACCA-----CATATCGTCGGCGTT 153919 ||||||| || || || | | || ||||| || | ||| ||| || || | Sbjct 441928 CGGCGAGCCCAGGGCATTCGTTGGGGCACATGAGGGTCCAGTCGCCAT-TCTTC----TC 441982 Query 153920 GACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCA 153979 ||| || |||||| || || || | ||| ||||| | ||||||||| || | Sbjct 441983 GACACGCTTCATGAAGAGGTCGGGGATCCACAGCGCAAGGAAGAGGTCGCGAGCGCGGAC 442042 Query 153980 ATCCTCCGCGCCCATGTTGCGTTTCAGATTGAGCACGCTATAGATGTCGGCGTGCCAGGG 154039 |||||| ||| ||| | | |||| || | | ||| |||||||||||||| Sbjct 442043 TTCCTCCTTGCCGTGGTTCTTTCTGAGATCAAGGAATTCAAAGACATCGGCGTGCCAGGG 442102 Query 154040 TTCAATGTAGACGGCCAGGGCACCTTTACGC---TTTCCGCCCTGATCGACGTGGCGCAC 154096 || | ||||| ||| | ||| || ||| || ||||| || ||||||| | | Sbjct 442103 CTCCAGGTAGATGGCGAAGGCGCCCGGTCGCTTGTTGCCGCCTTGGTCGACGTATCTGGC 442162 Query 154097 CATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTGCGGTGCCGTTGGTCGAATT 154156 | ||||||||||| |||| |||||| | | |||| | | |||||||||||| Sbjct 442163 AGTGTTGTTGAAGACTCGCAGCATGGGAACGACGCCGTTCGAGGTGCCGTTGGTGCCGGC 442222 Query 154157 GATCTTGCTGCCGCGGGCGCGCACTTGATGCACGTTAACGCCAATGCCGCCGCCGTACTT 154216 || | | ||| || || | | || ||||| | ||| || |||||| | || Sbjct 442223 AATGTAGGATCCGGTAGCACGAATGCGGTGGACGTTCAGGCCGATACCGCCGGCCATTTT 442282 Query 154217 TGATATGGCAGCGC-AGTCGCCCAGCGTCCTGTAGATGCCGTCGATGCTATCGTCGCGGA 154275 || || |||| |||| || || ||||||||| |||||||| || || | Sbjct 442283 AGAAATCATGGCGCAAGTC-TTGAGAGTGTCGTAGATGCCCTCGATGCTGTCTTCCTTCA 442341 Query 154276 CGCCGAGCAAGAAACACGAACACATTTGCGGAATG-CGCGTTCCCGCCGAAAAGAGGGTG 154334 | ||| | ||| ||||| | | || | || |||| ||||| |||||||| Sbjct 442342 TGTCGACGAGGAAGCACGAGGAAAGCTG-ACACTGAGGCGTGCCCGCGTTGAAGAGGGTA 442400 Query 154335 GGACTCGCGTGCGTAAACAGTTTTTGGCTCATCATGCGGTACGTTTCGATGGCGTCTTCG 154394 || ||||| || || | ||| | ||| | | ||| ||||| | | || || Sbjct 442401 GGTGAGGCGTGGGTGAAGAATTTACTGGACATGAGGTTGTAGGTTTCCAGGACGCGCTCA 442460 Query 154395 ATATCATCGCCGTGAATGCCGAGCGCGACGCGCATGAGCATGTGCTGCGGACGTTCGGCG 154454 || | || || ||||||| || || ||||||| ||||||||| || |||||| | Sbjct 442461 ATGTTGTCTCCCCAGATGCCGACAGCAACACGCATGATCATGTGCTGAGGTCGTTCGACA 442520 Query 154455 ACTCTATTGTCAATCTTCAAGAGATATCCAT-TTTCGAGGGTTTTGTAACCGAAATACTT 154513 | | ||| | ||||| |||||| | || || || || ||| |||| || |||| Sbjct 442521 ATCTTGCCGTCCAGCTTCAGGAGATA-CGATCGCTCCAGCGTCTTGAAACCAAAGTACTG 442579 Query 154514 GTATTCAAAATCTAGCTCATGAGCGATGGCCGCATCGAGC 154553 || | || ||| ||| | | | ||||| | |||||| Sbjct 442580 ATAGTTGAAGTCTCTCTCGTAAACAATGGCAGAGTCGAGC 442619 >seq56 Length=194926 Score = 118 bits (130), Expect = 1e-21 Identities = 167/231 (72%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 |||||| || | ||||| || | || | | | |||||||| || |||||||||||| Sbjct 69853 GCCGCCGCGGAGACGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGC 69794 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || || ||||||||| || || |||| | |||| || ||||| ||||| || || Sbjct 69793 CAATGTTCGTCCGTCCTCGAGCTGCTTGCCGGCAAAGATAAGTCGCTGCTGGTCGGGGGG 69734 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCC 138564 || ||||| ||||| ||| | || | || | ||| || | |||||| | |||||| Sbjct 69733 AATCCCTTCCTTGTC-TTGAATCTTCGACTTGACGTTG-TCAATGGTGTCTGACGACTCA 69676 Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || || | ||| | ||||| || ||||| || || ||||| || |||||| Sbjct 69675 ACTTCCAGCGTGATTGTTTTTCCCGTCAGTGTCTTGACAAAGATTTGCATG 69625 Score = 113 bits (124), Expect = 4e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 |||||| |||| |||| ||| | ||| | | | || ||||| || |||||||||||| Sbjct 69625 GCCGCCGCGCAGGCGCAGAACGAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGC 69566 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || || ||| ||||||||||| || | | |||| | || || ||||| || || Sbjct 69565 CAGGGTGCGGCCGTCTTCGAGTTGTTTGCCAGCAAAGATCAAGCGTTGCTGGTCGGGCGG 69506 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCA 138565 || || || ||||| |||||| || | ||||| | | |||||||| ||||||| Sbjct 69505 GATGCCCTCCTTGTCTTGGATTTTCGCCTTGACATTGT-CGATGGTGTCGGAAGACTCCA 69447 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | || || ||||| || || || || || |||||||| Sbjct 69446 CCTCCAGGGTGATGGTCTTCCCAGTGAGGGTCTTGACGAAGATCTGCAT 69398 Score = 113 bits (124), Expect = 4e-20 Identities = 144/196 (73%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||||||||||||||||||| | || | | ||||| || || ||||| | | Sbjct 70047 GACTCCTTTTGAATGTTGTAGTCGGCTAGGGTTCTCCCATCCTCAAGCTGCTTACCAGCA 69988 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || ||||| || || ||||| || || || ||||| ||| |||| | || | Sbjct 69987 AAGATGAGTCGCTGCTGATCAGGAGGAATGCCCTCCTTGTCT-TGAATTTTCGACTTCAC 69929 Query 138541 TGT-TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | || | ||| || | |||||||||||||| ||| | || || || ||||| || || Sbjct 69928 ATTATCAATGGTATCAGACGACTCCACCTCGAGCGTGATGGTCTTCCCGGTCAGCGTCTT 69869 Query 138600 TACAAAAATCTGCATG 138615 || |||||||||||| Sbjct 69868 GACGAAAATCTGCATG 69853 Score = 105 bits (116), Expect = 7e-18 Identities = 164/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| |||| || | ||| | ||| | | | || ||||| || |||||||||||| | Sbjct 69396 CCGCCACGCAGGCGAAGAACCAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCC 69337 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || ||||| |||||||| | | |||| | ||||| ||||| || || Sbjct 69336 AGGGTGCGGCCATCTTCGAGCTGTTTACCAGCAAAGATCAAGCGCTGCTGGTCGGGCGGG 69277 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 || || || ||||| ||| |||| | || | |||| | | |||||| | ||||||| Sbjct 69276 ATGCCCTCCTTGTCT-TGAATTTTCGACTTGACATTGT-CGATGGTGTCAGAAGACTCCA 69219 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGG 138616 |||||| || | || || || || || || ||||| || || ||||||| Sbjct 69218 CCTCGAGGGTGATGGTCTTTCCGGTGAGGGTCTTTACGAAGATTTGCATGG 69168 >seq67 Length=171618 Score = 100 bits (110), Expect = 3e-16 Identities = 163/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 138384 GCAGCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTC 138443 || ||| || |||| |||| || || || | | | |||||| || ||||||||||| Sbjct 155683 GCCGCCACCGCGCAGGCGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTC 155742 Query 138444 GCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGG 138503 | || || || |||||||| || || || | | |||| || ||||| ||||| || Sbjct 155743 GGCCAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGG 155802 Query 138504 AGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACT 138562 || || || || ||||| ||| || || | |||| || | |||||||| |||| Sbjct 155803 GGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTG-TCGATGGTGTCGGAAGACT 155861 Query 138563 CCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||||||| || | || || || || || || || || ||||||||||| Sbjct 155862 CCACCTCGAGGGTGATGGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 155913 >seq1 Length=2302571 Score = 96.9 bits (106), Expect = 3e-15 Identities = 288/439 (66%), Gaps = 9/439 (2%) Strand=Plus/Plus Query 52402 TGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCCGCCATCTTTT 52461 |||| ||||||||| ||||||||| | || || || || || ||||||||| Sbjct 1624818 TGGTTGCCTTCGCCGCTGTCGAGGGCATCTTCTTCAGTGGTGCATTCGCGTCCATCTTTT 1624877 Query 52462 ACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGCG 52521 | || | | ||| | |||||||| || || ||| ||||| | ||||| || | Sbjct 1624878 GGCTCAAGAAGCGCGGCCTCATGCCCGGGCTTACCTTCTCAAACGAACTCATATCCCGTG 1624937 Query 52522 ACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAGACGCGCGTGACCGAAAAAT 52581 |||| || ||||||| |||||||| ||||| || || | | | | | ||| Sbjct 1624938 ACGAGGGTTTGCACACCGACTTTGCATGCCTG--CTGCA---CTCTCATCTCAAGCAAAG 1624992 Query 52582 TGGATTC--GGACACGATCCTGAGCATGTTCAAGGAGGCGGTGGCTATCGAAAAGGAGTT 52639 | | | | | | |||| || ||| || || || | || || | || || Sbjct 1624993 AGCAAGCAAGCAAATCATCCAAGAAATCATCACCGATGCCGTCACCATTGAGCAAGATTT 1625052 Query 52640 TTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCG-CAGTCCATGTGCGAGT 52698 | |||| || |||||| || || || ||||||||| | || | ||| | | Sbjct 1625053 CCTGACGGAGGCTCTGCCGTGCGCTCTTCTCGGCATGAACTCCACACTG-ATGAAGCAAT 1625111 Query 52699 ACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCCAAAGTACTTCAACG 52758 ||||||| || || || || || |||||||| |||||| | |||| | ||| Sbjct 1625112 ACATCGAATTCGTTGCCGACCGCCTGTTGGTTGCTCTCGGGAATGAAAAGGTGTACAAGA 1625171 Query 52759 CTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCG 52818 | ||||||||||| |||||| | || || || || | ||||||||||||||||| | Sbjct 1625172 CAGCGAATCCGTTTGATTTTATGGAGAATATCTCCCTGGGTGGCAAGACCAACTTTTTTG 1625231 Query 52819 AGAAGCGAGTCGGCGAGTA 52837 |||||||||| || || || Sbjct 1625232 AGAAGCGAGTTGGTGAATA 1625250 >seq13 Length=702126 Score = 89.7 bits (98), Expect = 5e-13 Identities = 131/183 (72%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 138425 CCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGA 138484 |||| ||||||||||||||| || || || ||||| || || || || | | ||| Sbjct 289257 CCTTCTGAATGTTGTAGTCGGCCAGGGTTCGGCCATCCTCCAGCTGCTTGCCAGCAAAGA 289198 Query 138485 TTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGT 138543 | | |||||| ||||| ||||| || || || ||||| ||| || || | |||| Sbjct 289197 TCAAACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTG- 289139 Query 138544 TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACA 138603 || | ||||||| ||||| ||||||| ||| | || || || ||||| || || ||| Sbjct 289138 TCGATCGTGTCGGAGGACTCGACCTCGAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACA 289079 Query 138604 AAA 138606 ||| Sbjct 289078 AAA 289076 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496259614727280