Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09]
449 sequences; 39,397,682 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq2 230 2e-55
seq56 118 1e-21
seq67 100 3e-16
seq1 96.9 3e-15
seq13 89.7 5e-13
>seq2
Length=1075658
Score = 230 bits (254), Expect = 2e-55
Identities = 986/1540 (64%), Gaps = 25/1540 (2%)
Strand=Plus/Plus
Query 153028 GGTTGACCACTTGAAACTCGCCCGCCAACACTCGTCTCAAATATACATTGCTAGTGAAAG 153087
||||||| || || ||||||||||||| || |||| | || | ||| ||| | |
Sbjct 441091 GGTTGACGACCTGGAACTCGCCCGCCAGGACGCGTCGCTGGTAAATGTTGGACGTGTAGG 441150
Query 153088 GTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCATGTACGCCA 153147
| || ||| | ||||| ||||| || || || | ||||| || || |||||| ||| |
Sbjct 441151 GCTCGAAGCACTCGTTGTTGCCCAGAATCTGCGACGTGGACGCCGTGGGCATGGGCGCGA 441210
Query 153148 CCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCGTCCTTCAACGCCTGCCAATCCC 153207
|| || || || || | |||||| | || | ||||| | | | ||| ||||
Sbjct 441211 GCAGCAGCGAGTTGCGAATCCCGTGCTCCTTGATCTGCTCCTTGAGGGAATCCCACTCCC 441270
Query 153208 ACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACACTCCTCGACTGGCGGGAC 153267
||| | ||||| ||| ||||||||||||| |||| | | ||| | ||| |||
Sbjct 441271 ACAAGTCGGACGGCGTCACGTTCCACATGTCAAACTGCAGGATGCCTTCAGAGGCCGGAG 441330
Query 153268 TGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTGGGCCAGTTCGCAGCTA-GCC-TCGAG 153325
|| ||||| |||| || || | |||||| || || | | ||| || ||
Sbjct 441331 ATCCCTTGAACGTGGAGTAGGGACCCTCCTCCTTGGCCAGCTC-CACCGACGCCGTCAAG 441389
Query 153326 CGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCCGCTTCTTCGCTCTC 153385
||| | | ||| ||||| || || || || || || || || || |||
Sbjct 441390 -GCGGCGTGGTAGATGGTCTCAAAAATCTGCTTGTTCAGCTCGCGAGCCTCGGGAGACTC 441448
Query 153386 GTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACCGACGCCGATGGG 153445
| |||||||| ||| | ||||||||||||| || || | |||||| || |||||
Sbjct 441449 AAAGGGCATGCGAAGCGCAAGGAAGGCGTCGGCCAAGCCTTGAACACCGACACCAATGGG 441508
Query 153446 TCGATGCTTCTCGTTGCTGCGCCTCGCG-CTCGCTATGGGATAGTGATTGCGATCGATAA 153504
|||||| | ||||||| | || || | | ||| ||||| ||| ||||| |
Sbjct 441509 ACGATGCCGCATGTTGCTGTTGCGTGCTTCTTGG-ACGGGGTAGTGGTTGACGTCGATGA 441567
Query 153505 TTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTTTCTCGAAATCATAGG 153564
| |||||||| || || || ||||| || | | | || || | ||| || ||
Sbjct 441568 TCTTGTTGAGATTTCGGACAACCACGCGGGTGACGTCGTGCAGCTTTTGGAAGTCGTACT 441627
Query 153565 TCATTTCGTCGACGCGTACGCATCGATTCACGGCAATAGACGCCAGATTACAGACGGCCG 153624
| || |||| | || | || ||||| || || || || ||||||||
Sbjct 441628 TGCCTTGGTCGTAGTCCACAAAGGCGGGCAGGGCAAGGGAGGCAAGGTTGCAGACGGCAA 441687
Query 153625 TCTCTTCGGCGTCGCTGTACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACGC 153684
||| |||| | | ||||| | ||||||| |||||||||| || ||| |
Sbjct 441688 CCTCGTCGGGGGCCGAGTACTCGATAATCTCGGTGCAGAGGTTGGAGCTGCGAATGGTTC 441747
Query 153685 CCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGC 153744
|||| || | ||| ||||| || | ||||| || ||| | ||||| | || ||
Sbjct 441748 CCAAGTTCTTCTGGTTGCTCTTCCTGTTGCAATGATCCTTGTACAGCATAAAGGGGTTGC 441807
Query 153745 CGGTCTCGACTTGCGTTTCGACGATAAACCTATGCAGGTCCTGCGCTCGCACCCGCTGCC 153804
| |||||| || | |||| ||| | ||| | ||| || || | || |
Sbjct 441808 CAGTCTCGGTCTGAGCCTCGAGGATCGAGTACCACAGCTTCTGGGCGCGGATTGTCTTGC 441867
Query 153805 GATAGCGGCCCTCGCTCTCGTATCGCTCGTACAGTCGCTCAAACTCGTCGCCGTAGCAGT 153864
| ||||| |||| |||||| || |||| |||||||||||||||||||||||
Sbjct 441868 GGCCACGGCCTTCGCGCTCGTACTTTTCATACAAAGCCTCAAACTCGTCGCCGTAGCAGT 441927
Query 153865 CGGCGAGGCCGGGACACTGATGCGGACACATCAGCGACCA-----CATATCGTCGGCGTT 153919
||||||| || || || | | || ||||| || | ||| ||| || || |
Sbjct 441928 CGGCGAGCCCAGGGCATTCGTTGGGGCACATGAGGGTCCAGTCGCCAT-TCTTC----TC 441982
Query 153920 GACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCA 153979
||| || |||||| || || || | ||| ||||| | ||||||||| || |
Sbjct 441983 GACACGCTTCATGAAGAGGTCGGGGATCCACAGCGCAAGGAAGAGGTCGCGAGCGCGGAC 442042
Query 153980 ATCCTCCGCGCCCATGTTGCGTTTCAGATTGAGCACGCTATAGATGTCGGCGTGCCAGGG 154039
|||||| ||| ||| | | |||| || | | ||| ||||||||||||||
Sbjct 442043 TTCCTCCTTGCCGTGGTTCTTTCTGAGATCAAGGAATTCAAAGACATCGGCGTGCCAGGG 442102
Query 154040 TTCAATGTAGACGGCCAGGGCACCTTTACGC---TTTCCGCCCTGATCGACGTGGCGCAC 154096
|| | ||||| ||| | ||| || ||| || ||||| || ||||||| | |
Sbjct 442103 CTCCAGGTAGATGGCGAAGGCGCCCGGTCGCTTGTTGCCGCCTTGGTCGACGTATCTGGC 442162
Query 154097 CATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTGCGGTGCCGTTGGTCGAATT 154156
| ||||||||||| |||| |||||| | | |||| | | ||||||||||||
Sbjct 442163 AGTGTTGTTGAAGACTCGCAGCATGGGAACGACGCCGTTCGAGGTGCCGTTGGTGCCGGC 442222
Query 154157 GATCTTGCTGCCGCGGGCGCGCACTTGATGCACGTTAACGCCAATGCCGCCGCCGTACTT 154216
|| | | ||| || || | | || ||||| | ||| || |||||| | ||
Sbjct 442223 AATGTAGGATCCGGTAGCACGAATGCGGTGGACGTTCAGGCCGATACCGCCGGCCATTTT 442282
Query 154217 TGATATGGCAGCGC-AGTCGCCCAGCGTCCTGTAGATGCCGTCGATGCTATCGTCGCGGA 154275
|| || |||| |||| || || ||||||||| |||||||| || || |
Sbjct 442283 AGAAATCATGGCGCAAGTC-TTGAGAGTGTCGTAGATGCCCTCGATGCTGTCTTCCTTCA 442341
Query 154276 CGCCGAGCAAGAAACACGAACACATTTGCGGAATG-CGCGTTCCCGCCGAAAAGAGGGTG 154334
| ||| | ||| ||||| | | || | || |||| ||||| ||||||||
Sbjct 442342 TGTCGACGAGGAAGCACGAGGAAAGCTG-ACACTGAGGCGTGCCCGCGTTGAAGAGGGTA 442400
Query 154335 GGACTCGCGTGCGTAAACAGTTTTTGGCTCATCATGCGGTACGTTTCGATGGCGTCTTCG 154394
|| ||||| || || | ||| | ||| | | ||| ||||| | | || ||
Sbjct 442401 GGTGAGGCGTGGGTGAAGAATTTACTGGACATGAGGTTGTAGGTTTCCAGGACGCGCTCA 442460
Query 154395 ATATCATCGCCGTGAATGCCGAGCGCGACGCGCATGAGCATGTGCTGCGGACGTTCGGCG 154454
|| | || || ||||||| || || ||||||| ||||||||| || |||||| |
Sbjct 442461 ATGTTGTCTCCCCAGATGCCGACAGCAACACGCATGATCATGTGCTGAGGTCGTTCGACA 442520
Query 154455 ACTCTATTGTCAATCTTCAAGAGATATCCAT-TTTCGAGGGTTTTGTAACCGAAATACTT 154513
| | ||| | ||||| |||||| | || || || || ||| |||| || ||||
Sbjct 442521 ATCTTGCCGTCCAGCTTCAGGAGATA-CGATCGCTCCAGCGTCTTGAAACCAAAGTACTG 442579
Query 154514 GTATTCAAAATCTAGCTCATGAGCGATGGCCGCATCGAGC 154553
|| | || ||| ||| | | | ||||| | ||||||
Sbjct 442580 ATAGTTGAAGTCTCTCTCGTAAACAATGGCAGAGTCGAGC 442619
>seq56
Length=194926
Score = 118 bits (130), Expect = 1e-21
Identities = 167/231 (72%), Gaps = 4/231 (2%)
Strand=Plus/Minus
Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446
|||||| || | ||||| || | || | | | |||||||| || ||||||||||||
Sbjct 69853 GCCGCCGCGGAGACGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGC 69794
Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506
|| || || ||||||||| || || |||| | |||| || ||||| ||||| || ||
Sbjct 69793 CAATGTTCGTCCGTCCTCGAGCTGCTTGCCGGCAAAGATAAGTCGCTGCTGGTCGGGGGG 69734
Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCC 138564
|| ||||| ||||| ||| | || | || | ||| || | |||||| | ||||||
Sbjct 69733 AATCCCTTCCTTGTC-TTGAATCTTCGACTTGACGTTG-TCAATGGTGTCTGACGACTCA 69676
Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615
|| || | ||| | ||||| || ||||| || || ||||| || ||||||
Sbjct 69675 ACTTCCAGCGTGATTGTTTTTCCCGTCAGTGTCTTGACAAAGATTTGCATG 69625
Score = 113 bits (124), Expect = 4e-20
Identities = 164/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446
|||||| |||| |||| ||| | ||| | | | || ||||| || ||||||||||||
Sbjct 69625 GCCGCCGCGCAGGCGCAGAACGAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGC 69566
Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506
|| || || ||| ||||||||||| || | | |||| | || || ||||| || ||
Sbjct 69565 CAGGGTGCGGCCGTCTTCGAGTTGTTTGCCAGCAAAGATCAAGCGTTGCTGGTCGGGCGG 69506
Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCA 138565
|| || || ||||| |||||| || | ||||| | | |||||||| |||||||
Sbjct 69505 GATGCCCTCCTTGTCTTGGATTTTCGCCTTGACATTGT-CGATGGTGTCGGAAGACTCCA 69447
Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|||| | || | || || ||||| || || || || || ||||||||
Sbjct 69446 CCTCCAGGGTGATGGTCTTCCCAGTGAGGGTCTTGACGAAGATCTGCAT 69398
Score = 113 bits (124), Expect = 4e-20
Identities = 144/196 (73%), Gaps = 2/196 (1%)
Strand=Plus/Minus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||||||||||||||||||| | || | | ||||| || || ||||| | |
Sbjct 70047 GACTCCTTTTGAATGTTGTAGTCGGCTAGGGTTCTCCCATCCTCAAGCTGCTTACCAGCA 69988
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540
|||| || ||||| || || ||||| || || || ||||| ||| |||| | || |
Sbjct 69987 AAGATGAGTCGCTGCTGATCAGGAGGAATGCCCTCCTTGTCT-TGAATTTTCGACTTCAC 69929
Query 138541 TGT-TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599
| || | ||| || | |||||||||||||| ||| | || || || ||||| || ||
Sbjct 69928 ATTATCAATGGTATCAGACGACTCCACCTCGAGCGTGATGGTCTTCCCGGTCAGCGTCTT 69869
Query 138600 TACAAAAATCTGCATG 138615
|| ||||||||||||
Sbjct 69868 GACGAAAATCTGCATG 69853
Score = 105 bits (116), Expect = 7e-18
Identities = 164/231 (71%), Gaps = 4/231 (2%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
||||| |||| || | ||| | ||| | | | || ||||| || |||||||||||| |
Sbjct 69396 CCGCCACGCAGGCGAAGAACCAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCC 69337
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| || || || ||||| |||||||| | | |||| | ||||| ||||| || ||
Sbjct 69336 AGGGTGCGGCCATCTTCGAGCTGTTTACCAGCAAAGATCAAGCGCTGCTGGTCGGGCGGG 69277
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565
|| || || ||||| ||| |||| | || | |||| | | |||||| | |||||||
Sbjct 69276 ATGCCCTCCTTGTCT-TGAATTTTCGACTTGACATTGT-CGATGGTGTCAGAAGACTCCA 69219
Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGG 138616
|||||| || | || || || || || || ||||| || || |||||||
Sbjct 69218 CCTCGAGGGTGATGGTCTTTCCGGTGAGGGTCTTTACGAAGATTTGCATGG 69168
>seq67
Length=171618
Score = 100 bits (110), Expect = 3e-16
Identities = 163/232 (70%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 138384 GCAGCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTC 138443
|| ||| || |||| |||| || || || | | | |||||| || |||||||||||
Sbjct 155683 GCCGCCACCGCGCAGGCGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTC 155742
Query 138444 GCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGG 138503
| || || || |||||||| || || || | | |||| || ||||| ||||| ||
Sbjct 155743 GGCCAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGG 155802
Query 138504 AGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACT 138562
|| || || || ||||| ||| || || | |||| || | |||||||| ||||
Sbjct 155803 GGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTG-TCGATGGTGTCGGAAGACT 155861
Query 138563 CCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
||||||||| || | || || || || || || || || |||||||||||
Sbjct 155862 CCACCTCGAGGGTGATGGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 155913
>seq1
Length=2302571
Score = 96.9 bits (106), Expect = 3e-15
Identities = 288/439 (66%), Gaps = 9/439 (2%)
Strand=Plus/Plus
Query 52402 TGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCCGCCATCTTTT 52461
|||| ||||||||| ||||||||| | || || || || || |||||||||
Sbjct 1624818 TGGTTGCCTTCGCCGCTGTCGAGGGCATCTTCTTCAGTGGTGCATTCGCGTCCATCTTTT 1624877
Query 52462 ACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGCG 52521
| || | | ||| | |||||||| || || ||| ||||| | ||||| || |
Sbjct 1624878 GGCTCAAGAAGCGCGGCCTCATGCCCGGGCTTACCTTCTCAAACGAACTCATATCCCGTG 1624937
Query 52522 ACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAGACGCGCGTGACCGAAAAAT 52581
|||| || ||||||| |||||||| ||||| || || | | | | | |||
Sbjct 1624938 ACGAGGGTTTGCACACCGACTTTGCATGCCTG--CTGCA---CTCTCATCTCAAGCAAAG 1624992
Query 52582 TGGATTC--GGACACGATCCTGAGCATGTTCAAGGAGGCGGTGGCTATCGAAAAGGAGTT 52639
| | | | | | |||| || ||| || || || | || || | || ||
Sbjct 1624993 AGCAAGCAAGCAAATCATCCAAGAAATCATCACCGATGCCGTCACCATTGAGCAAGATTT 1625052
Query 52640 TTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCG-CAGTCCATGTGCGAGT 52698
| |||| || |||||| || || || ||||||||| | || | ||| | |
Sbjct 1625053 CCTGACGGAGGCTCTGCCGTGCGCTCTTCTCGGCATGAACTCCACACTG-ATGAAGCAAT 1625111
Query 52699 ACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCCAAAGTACTTCAACG 52758
||||||| || || || || || |||||||| |||||| | |||| | |||
Sbjct 1625112 ACATCGAATTCGTTGCCGACCGCCTGTTGGTTGCTCTCGGGAATGAAAAGGTGTACAAGA 1625171
Query 52759 CTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCG 52818
| ||||||||||| |||||| | || || || || | ||||||||||||||||| |
Sbjct 1625172 CAGCGAATCCGTTTGATTTTATGGAGAATATCTCCCTGGGTGGCAAGACCAACTTTTTTG 1625231
Query 52819 AGAAGCGAGTCGGCGAGTA 52837
|||||||||| || || ||
Sbjct 1625232 AGAAGCGAGTTGGTGAATA 1625250
>seq13
Length=702126
Score = 89.7 bits (98), Expect = 5e-13
Identities = 131/183 (72%), Gaps = 2/183 (1%)
Strand=Plus/Minus
Query 138425 CCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGA 138484
|||| ||||||||||||||| || || || ||||| || || || || | | |||
Sbjct 289257 CCTTCTGAATGTTGTAGTCGGCCAGGGTTCGGCCATCCTCCAGCTGCTTGCCAGCAAAGA 289198
Query 138485 TTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGT 138543
| | |||||| ||||| ||||| || || || ||||| ||| || || | ||||
Sbjct 289197 TCAAACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTG- 289139
Query 138544 TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACA 138603
|| | ||||||| ||||| ||||||| ||| | || || || ||||| || || |||
Sbjct 289138 TCGATCGTGTCGGAGGACTCGACCTCGAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACA 289079
Query 138604 AAA 138606
|||
Sbjct 289078 AAA 289076
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496259614727280
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