Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09]
449 sequences; 39,397,682 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq56 132 5e-26
seq67 131 2e-25
seq1 123 2e-23
seq13 113 4e-20
>seq56
Length=194926
Score = 132 bits (146), Expect = 5e-26
Identities = 156/211 (74%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964
|||| ||| | || || || || || || ||||| ||| ||| ||||| ||| ||
Sbjct 69378 ACCAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCATCTTCG 69319
Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024
|||||||| ||||| ||||||| |||||||| ||||| || ||||||||||||||
Sbjct 69318 AGCTGTTTACCAGCAAAGATCAAGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCTTGA 69259
Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTG 127084
|||||| ||||| | |||| |||||| | | ||| || |||| ||| | || ||
Sbjct 69258 ATTTTCGACTTGACATTGTCGATGGTGTCAGAAGACTCCACCTCGAGGGTGATGGTCTTT 69199
Query 127085 CCGGTCAGAGTTTTTACAAAAATCTGCATGG 127115
||||| || || ||||| || || |||||||
Sbjct 69198 CCGGTGAGGGTCTTTACGAAGATTTGCATGG 69168
Score = 118 bits (130), Expect = 1e-21
Identities = 163/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | || | ||||| || | ||| ||||| |||||||| ||||| ||| |
Sbjct 70080 CCACCACGCAGGCGGAGCACCAGGTGCAACGTCGACTCCTTTTGAATGTTGTAGTCGGCT 70021
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| || | ||| || ||||| || ||||| |||| | |||||||||||| |||||
Sbjct 70020 AGGGTTCTCCCATCCTCAAGCTGCTTACCAGCAAAGATGAGTCGCTGCTGATCAGGAGGA 69961
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
|||||||||||||| |||||| ||| | | || | ||| || | ||| ||
Sbjct 69960 ATGCCCTCCTTGTCTTGAATTTTCGACTTCACATTATCAATGGTATCAGACGACTCCACC 69901
Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114
|||| || | || || |||||||| || || || ||||||||||||
Sbjct 69900 TCGAGCGTGATGGTCTTCCCGGTCAGCGTCTTGACGAAAATCTGCATG 69853
Score = 113 bits (124), Expect = 4e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
|| ||||| | |||| || | ||| | || || || || || || ||||| ||| ||
Sbjct 69624 CCGCCGCGCAGGCGCAGAACGAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCC 69565
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| ||||| || || || ||||| ||||| ||||||| || ||||| ||||| ||
Sbjct 69564 AGGGTGCGGCCGTCTTCGAGTTGTTTGCCAGCAAAGATCAAGCGTTGCTGGTCGGGCGGG 69505
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
|||||||||||||| ||||||| ||||| | |||| |||||| | | ||| ||
Sbjct 69504 ATGCCCTCCTTGTCTTGGATTTTCGCCTTGACATTGTCGATGGTGTCGGAAGACTCCACC 69445
Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| | ||| | || || || || || || || || || ||||||||
Sbjct 69444 TCCAGGGTGATGGTCTTCCCAGTGAGGGTCTTGACGAAGATCTGCAT 69398
>seq67
Length=171618
Score = 131 bits (144), Expect = 2e-25
Identities = 165/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
|||||||| | |||| |||||| || | || ||| || || || ||||| ||| ||
Sbjct 155687 CCACCGCGCAGGCGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGCC 155746
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| ||||| ||| || ||||| || ||||| |||| | ||||||||| ||||| ||
Sbjct 155747 AGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGGG 155806
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
||||||||||||||| ||| || ||||| | |||| |||||| | | ||| ||
Sbjct 155807 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 155866
Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|||| ||| | || || || || || || || || |||||||||||
Sbjct 155867 TCGAGGGTGATGGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 155913
>seq1
Length=2302571
Score = 123 bits (136), Expect = 2e-23
Identities = 301/449 (67%), Gaps = 9/449 (2%)
Strand=Plus/Plus
Query 47133 GCCGAACGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTC--TCGGGCAGCTTTG 47190
||| |||| ||| | || |||||| ||||||||| |||||||| | | ||| || |
Sbjct 1624808 GCCCAACGATTGGTTGCCTTCGCCGCTGTCGAGGGCATCTTCTTCAGTGGTGCA--TTCG 1624865
Query 47191 CGGCGATATTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGC 47250
|| | || |||| | || | || | |||||||| || || || ||||| |
Sbjct 1624866 CGTCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGGCTTACCTTCTCAAACGAAC 1624925
Query 47251 TAATCTCGAGAGACGAAGGCCTGCACACCAACTTTGCCTGTCTCTACTACAACACTAGAG 47310
| || || | ||||| || |||||||| ||||||| || || || || | ||
Sbjct 1624926 TCATATCCCGTGACGAGGGTTTGCACACCGACTTTGCATGCCTG--CTGCA-CTCTCATC 1624982
Query 47311 TCGATCAAA-AGTTGGACGTGCCCACCGTCAGCGACATGTTTGCCGAAGCCGTCGCCATT 47369
|| | |||| || | | || | | || || || | |||| |||||| |||||
Sbjct 1624983 TCAAGCAAAGAGCAAG-CAAGCAAATCATCCAAGAAATCATCACCGATGCCGTCACCATT 1625041
Query 47370 GAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATG 47429
||| || || | | ||||||||||| || | | || |||||| | ||
Sbjct 1625042 GAGCAAGATTTCCTGACGGAGGCTCTGCCGTGCGCTCTTCTCGGCATGAACTCCACACTG 1625101
Query 47430 ATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCCAAG 47489
|||| | ||||||||||| || |||||||||||| | ||| || | || |||
Sbjct 1625102 ATGAAGCAATACATCGAATTCGTTGCCGACCGCCTGTTGGTTGCTCTCGGGAATGAAAAG 1625161
Query 47490 ATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACC 47549
| ||| | || | |||||| || || |||||| | || || || || | |||||||||
Sbjct 1625162 GTGTACAAGACAGCGAATCCGTTTGATTTTATGGAGAATATCTCCCTGGGTGGCAAGACC 1625221
Query 47550 AACTTTTTCGAGAAGCGCGTCGGCGAATA 47578
|||||||| |||||||| || || |||||
Sbjct 1625222 AACTTTTTTGAGAAGCGAGTTGGTGAATA 1625250
>seq13
Length=702126
Score = 113 bits (124), Expect = 4e-20
Identities = 133/180 (74%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985
|| ||||| ||||| ||| ||| || || ||| || ||||| || ||||| |||||
Sbjct 289255 TTCTGAATGTTGTAGTCGGCCAGGGTTCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATC 289196
Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045
|| |||||||| |||||||| ||||||||||||||| ||| || ||||| | |||
Sbjct 289195 AAACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 289136
Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105
| ||||| | |||||| |||| || | || ||||| ||||| || || ||||||
Sbjct 289135 ATCGTGTCGGAGGACTCGACCTCGAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAA 289076
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475498131251760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |