Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09]
449 sequences; 39,397,682 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq56 111 1e-19
seq2 104 2e-17
>seq56
Length=194926
Score = 111 bits (122), Expect = 1e-19
Identities = 150/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191
|| ||||| || || |||||||| ||||| || || ||| | ||| ||| ||
Sbjct 69378 ACCAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCATCTTCG 69319
Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251
| ||||| || || | ||||| || |||||||| ||||| ||||| || || ||||||
Sbjct 69318 AGCTGTTTACCAGCAAAGATCAAGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCTTGA 69259
Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311
||||| |||| || | |||||| |||||||| || ||||| || | || ||
Sbjct 69258 ATTTTCGACTTGACATTGTCGATGGTGTCAGAAGACTCCACCTCGAGGGTGATGGTCTTT 69199
Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
||||| || || ||||| || ||||||||
Sbjct 69198 CCGGTGAGGGTCTTTACGAAGATTTGCAT 69170
Score = 105 bits (116), Expect = 6e-18
Identities = 166/238 (70%), Gaps = 0/238 (0%)
Strand=Plus/Minus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| || ||||| || | || || ||||| || || |||||||| ||||| || || |||
Sbjct 69627 ATGCCGCCGCGCAGGCGCAGAACGAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCG 69568
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
| ||| || || | |||||| || || | ||||| ||||||||||| |||
Sbjct 69567 GCCAGGGTGCGGCCGTCTTCGAGTTGTTTGCCAGCAAAGATCAAGCGTTGCTGGTCGGGC 69508
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290
|| ||||| || || ||||| ||||| |||| || | |||||||||||||||
Sbjct 69507 GGGATGCCCTCCTTGTCTTGGATTTTCGCCTTGACATTGTCGATGGTGTCGGAAGACTCC 69448
Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCGCGAC 45348
|| || || || | || || || || || || || || || || ||||| ||| ||
Sbjct 69447 ACCTCCAGGGTGATGGTCTTCCCAGTGAGGGTCTTGACGAAGATCTGCATACCGCCAC 69390
Score = 87.8 bits (96), Expect = 2e-12
Identities = 162/237 (68%), Gaps = 2/237 (1%)
Strand=Plus/Minus
Query 45106 ATTTTATT--CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATT 45163
|| ||||| || || || || | | ||| || |||| ||| || |||||||| || ||
Sbjct 70090 ATCTTATTGGCCACCACGCAGGCGGAGCACCAGGTGCAACGTCGACTCCTTTTGAATGTT 70031
Query 45164 ATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTG 45223
|| ||| | |||| | ||| || | || || || || | || | ||| |||||
Sbjct 70030 GTAGTCGGCTAGGGTTCTCCCATCCTCAAGCTGCTTACCAGCAAAGATGAGTCGCTGCTG 69971
Query 45224 GTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGA 45283
|| || |||||||| || || ||||||||||| || | || | ||| || ||
Sbjct 69970 ATCAGGAGGAATGCCCTCCTTGTCTTGAATTTTCGACTTCACATTATCAATGGTATCAGA 69911
Query 45284 AGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
||||| || ||||| || | || || ||||| || || || || ||||| |||||
Sbjct 69910 CGACTCCACCTCGAGCGTGATGGTCTTCCCGGTCAGCGTCTTGACGAAAATCTGCAT 69854
>seq2
Length=1075658
Score = 104 bits (114), Expect = 2e-17
Identities = 293/443 (66%), Gaps = 9/443 (2%)
Strand=Plus/Minus
Query 122898 AAGGTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGTGCACGGACGC 122957
||| | | |||||| ||| || ||| ||||||| || ||| | ||| | ||| |
Sbjct 442525 AAGATTGTCGAACGACCTCAGCACATGATCATGCGTGTTGCTGTCGGCATCTGGGGAGAC 442466
Query 122958 GACATCGAAAACGCGACC--GAAACTTACGATTTGATGTCTCAAAAATTTTTCACGCACG 123015
|||| || |||| || ||||| ||| | | ||||| ||||| ||||| ||||
Sbjct 442465 AACATTGAG--CGCGTCCTGGAAACCTACAACCTCATGTCCAGTAAATTCTTCACCCACG 442408
Query 123016 CGAGTCCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTTTTTGC 123075
| || || | ||| ||| |||||| | |||| | || ||||| || |
Sbjct 442407 CCTCACCTACCCTCTTCAACGCGGGCACGCCTCAGTGTCAGCTTTCCTCGTGCTTCCTCG 442348
Query 123076 TCACCTTGCGCGAAGACAGCATCACCGGTATCTATGAAACTTTGCGCGA-TTGCGCGTTG 123134
|| | || |||||||||||| || ||||| || ||| | | || |||||| ||
Sbjct 442347 TCGACATGAAGGAAGACAGCATCGAGGGCATCTACGACACTCT-CAAGACTTGCGCCATG 442289
Query 123135 ATTTCCAAATTTGGCGGCGGCATAGGCGTGAACGTGCACGACGTAAGAGGCCGCGGAAGC 123194
||||| ||| | | |||||| || ||| ||||||| ||| | | | | |||| |
Sbjct 442288 ATTTCTAAAATGGCCGGCGGTATCGGCCTGAACGTCCACCGCATTCGTGCTACCGGATCC 442229
Query 123195 CGCATCAGAAGCACCGACGGAATCGCCTCCGGGCTCGAATCCATGCTGCGAGTTTACAAT 123254
||| ||||| |||| | | | ||| ||| ||||||||||||| | |||
Sbjct 442228 TACATTGCCGGCACCAACGGCACCTCGAACGGCGTCGTTCCCATGCTGCGAGTCTTCAAC 442169
Query 123255 AACGCCGTGCGGCACGTCGACCAGGGCGGCAA-ACGCAA--AGGCGCGATGGCGATCTAT 123311
||| | | | |||||||||| |||||||| | || | ||||| | || |||||
Sbjct 442168 AACACTGCCAGATACGTCGACCAAGGCGGCAACAAGCGACCGGGCGCCTTCGCCATCTAC 442109
Query 123312 CTAGAACCGTGGCACGTTGATGT 123334
|| || || ||||||| |||||
Sbjct 442108 CTGGAGCCCTGGCACGCCGATGT 442086
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 452000663132040
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