Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09] 449 sequences; 39,397,682 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq56 111 1e-19 seq2 104 2e-17 >seq56 Length=194926 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || ||||| || || |||||||| ||||| || || ||| | ||| ||| || Sbjct 69378 ACCAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCATCTTCG 69319 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | ||||| || || | ||||| || |||||||| ||||| ||||| || || |||||| Sbjct 69318 AGCTGTTTACCAGCAAAGATCAAGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCTTGA 69259 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 ||||| |||| || | |||||| |||||||| || ||||| || | || || Sbjct 69258 ATTTTCGACTTGACATTGTCGATGGTGTCAGAAGACTCCACCTCGAGGGTGATGGTCTTT 69199 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || || ||||| || |||||||| Sbjct 69198 CCGGTGAGGGTCTTTACGAAGATTTGCAT 69170 Score = 105 bits (116), Expect = 6e-18 Identities = 166/238 (70%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || ||||| || | || || ||||| || || |||||||| ||||| || || ||| Sbjct 69627 ATGCCGCCGCGCAGGCGCAGAACGAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCG 69568 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| || || | |||||| || || | ||||| ||||||||||| ||| Sbjct 69567 GCCAGGGTGCGGCCGTCTTCGAGTTGTTTGCCAGCAAAGATCAAGCGTTGCTGGTCGGGC 69508 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || ||||| || || ||||| ||||| |||| || | ||||||||||||||| Sbjct 69507 GGGATGCCCTCCTTGTCTTGGATTTTCGCCTTGACATTGTCGATGGTGTCGGAAGACTCC 69448 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCGCGAC 45348 || || || || | || || || || || || || || || || ||||| ||| || Sbjct 69447 ACCTCCAGGGTGATGGTCTTCCCAGTGAGGGTCTTGACGAAGATCTGCATACCGCCAC 69390 Score = 87.8 bits (96), Expect = 2e-12 Identities = 162/237 (68%), Gaps = 2/237 (1%) Strand=Plus/Minus Query 45106 ATTTTATT--CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATT 45163 || ||||| || || || || | | ||| || |||| ||| || |||||||| || || Sbjct 70090 ATCTTATTGGCCACCACGCAGGCGGAGCACCAGGTGCAACGTCGACTCCTTTTGAATGTT 70031 Query 45164 ATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTG 45223 || ||| | |||| | ||| || | || || || || | || | ||| ||||| Sbjct 70030 GTAGTCGGCTAGGGTTCTCCCATCCTCAAGCTGCTTACCAGCAAAGATGAGTCGCTGCTG 69971 Query 45224 GTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGA 45283 || || |||||||| || || ||||||||||| || | || | ||| || || Sbjct 69970 ATCAGGAGGAATGCCCTCCTTGTCTTGAATTTTCGACTTCACATTATCAATGGTATCAGA 69911 Query 45284 AGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || ||||| || | || || ||||| || || || || ||||| ||||| Sbjct 69910 CGACTCCACCTCGAGCGTGATGGTCTTCCCGGTCAGCGTCTTGACGAAAATCTGCAT 69854 >seq2 Length=1075658 Score = 104 bits (114), Expect = 2e-17 Identities = 293/443 (66%), Gaps = 9/443 (2%) Strand=Plus/Minus Query 122898 AAGGTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGTGCACGGACGC 122957 ||| | | |||||| ||| || ||| ||||||| || ||| | ||| | ||| | Sbjct 442525 AAGATTGTCGAACGACCTCAGCACATGATCATGCGTGTTGCTGTCGGCATCTGGGGAGAC 442466 Query 122958 GACATCGAAAACGCGACC--GAAACTTACGATTTGATGTCTCAAAAATTTTTCACGCACG 123015 |||| || |||| || ||||| ||| | | ||||| ||||| ||||| |||| Sbjct 442465 AACATTGAG--CGCGTCCTGGAAACCTACAACCTCATGTCCAGTAAATTCTTCACCCACG 442408 Query 123016 CGAGTCCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTTTTTGC 123075 | || || | ||| ||| |||||| | |||| | || ||||| || | Sbjct 442407 CCTCACCTACCCTCTTCAACGCGGGCACGCCTCAGTGTCAGCTTTCCTCGTGCTTCCTCG 442348 Query 123076 TCACCTTGCGCGAAGACAGCATCACCGGTATCTATGAAACTTTGCGCGA-TTGCGCGTTG 123134 || | || |||||||||||| || ||||| || ||| | | || |||||| || Sbjct 442347 TCGACATGAAGGAAGACAGCATCGAGGGCATCTACGACACTCT-CAAGACTTGCGCCATG 442289 Query 123135 ATTTCCAAATTTGGCGGCGGCATAGGCGTGAACGTGCACGACGTAAGAGGCCGCGGAAGC 123194 ||||| ||| | | |||||| || ||| ||||||| ||| | | | | |||| | Sbjct 442288 ATTTCTAAAATGGCCGGCGGTATCGGCCTGAACGTCCACCGCATTCGTGCTACCGGATCC 442229 Query 123195 CGCATCAGAAGCACCGACGGAATCGCCTCCGGGCTCGAATCCATGCTGCGAGTTTACAAT 123254 ||| ||||| |||| | | | ||| ||| ||||||||||||| | ||| Sbjct 442228 TACATTGCCGGCACCAACGGCACCTCGAACGGCGTCGTTCCCATGCTGCGAGTCTTCAAC 442169 Query 123255 AACGCCGTGCGGCACGTCGACCAGGGCGGCAA-ACGCAA--AGGCGCGATGGCGATCTAT 123311 ||| | | | |||||||||| |||||||| | || | ||||| | || ||||| Sbjct 442168 AACACTGCCAGATACGTCGACCAAGGCGGCAACAAGCGACCGGGCGCCTTCGCCATCTAC 442109 Query 123312 CTAGAACCGTGGCACGTTGATGT 123334 || || || ||||||| ||||| Sbjct 442108 CTGGAGCCCTGGCACGCCGATGT 442086 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452000663132040