Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09] 449 sequences; 39,397,682 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq2 232 8e-56 seq1 95.1 1e-14 >seq2 Length=1075658 Score = 232 bits (256), Expect = 8e-56 Identities = 1167/1843 (63%), Gaps = 31/1843 (2%) Strand=Plus/Plus Query 115519 TCAAGGCTGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTC 115578 |||| | ||||||| ||||| ||| ||| | | || | ||||||||| || ||| Sbjct 440748 TCAACGGTGAACTGGATGGGGGCCGCGGCGGCTTGCGTGCGCAAGTAGTACATGCCAGTC 440807 Query 115579 TTGAGCCCCTGCTTCCA---GGCATACATATGCATTGAGGACAACTTGGAGAGTGTTGGA 115635 ||||| ||| ||||||| |||| | ||||| || | | |||| | ||||| Sbjct 440808 TTGAGACCCAGCTTCCACCCGGCAAAG---TGCATCGACGTGATCTTGCCCATGGTTGGG 440864 Query 115636 CTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCC 115695 | |||| | ||| | | ||||| || ||||| ||| || || || || ||| Sbjct 440865 TCCTTCATGTGAATGTTGAGAGACTGGGACTGGTCGATAAAGGCACCGCGGTCGGCGGCC 440924 Query 115696 ATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAGGTTCTTAATATCA 115755 || | | ||||| | | |||||||| || || |||| || ||| | || Sbjct 440925 ATCTGCACCACATGACGCTGCGAAATTTCCCAGACCGTCTTGTACAGAGCCTTTACCTCG 440984 Query 115756 TCTGGGATATCCACGATATTTTGGATAGAGCCACCTGCCTTGACCATGA---GATCCTTC 115812 | || || | ||| || ||||| ||||| || | | |||| ||| |||| Sbjct 440985 CCGGGAATGTTGGGGATGTTCTGGATCGAGCCGTT---CTCGGCAATGATGCGATTCTTC 441041 Query 115813 ATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCTCCACGAGGTGCTTATTGACAACA 115872 || | | |||||| ||||| || | |||||||| | || ||||| || Sbjct 441042 ATGGCGTCTGACCACAGACCCATGTCGACGAGATCCTTGAGAAGCCATGGGTTGACGACC 441101 Query 115873 ACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGCTCAAAGCAC 115932 ||||| ||||| ||| ||||| | | || ||||||| |||||| ||||| |||||| Sbjct 441102 TGGAACTCGCCCGCCAGGACGCGTCGCTGGTAAATGTTGGACGTGTAGGGCTCGAAGCAC 441161 Query 115933 TCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTG 115992 || ||||| |||| || || | ||||| || ||||||||||| || | || || | Sbjct 441162 TCGTTGTTGCCCAGAATCTGCGACGTGGACGCCGTGGGCATGGGCGCGAGCAGCAGCGAG 441221 Query 115993 TTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTC---GTAGTTGAGC 116049 ||||| | || | || | || | |||||||||| ||||| || ||| | | Sbjct 441222 TTGCGAATCCCGTGCTCCTTGATCTGCTCCTTGAGGGAATCCCACTCCCACAAGTCGGAC 441281 Query 116050 TTTGTCTCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCA 116109 | | | | | |||||| |||||||| ||||| |||| || || || ||||||| Sbjct 441282 ---GGCGTCACGTTCCACATGTCAAACTGCAGGATGCCTTCAGAGGCCGGAGATCCCTTG 441338 Query 116110 AATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGA 116169 || || || || ||||| ||| |||| || |||| | ||| ||||| Sbjct 441339 AACGTGGAGTAGGGACCCTCCTCCTTGGCCAGCTCCACCGACGCCGTCAAGGCGGCGTGG 441398 Query 116170 TACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGA 116229 || || ||||||||||| | |||| | |||||| || ||||| | | Sbjct 441399 TAGATGGTCTCAAAAATCTGCTTGTTCAGCTCGCGAGCCTCGGGAGACTCAAAGGGCATG 441458 Query 116230 CGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTC 116289 || | || || | || || | ||||| ||||||| ||||| || ||||| | | Sbjct 441459 CGAAGCGCAAGGAAGGCGTCGGCCAAGCCTTGAACACCGACACCAATGGGACGATGCCGC 441518 Query 116290 ATATTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGA 116349 || || || || || | ||||| || || ||||| | | | || ||| Sbjct 441519 ATGTTGCTGTTGCGTGCTTCTTGGACGGGGTAGTGGTTGACGTCGATGATCTTGTTGAGA 441578 Query 116350 TTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCT 116409 ||| | || || |||| || || ||||||| | | || | ||| || Sbjct 441579 TTTCGGACAACCACGCGGGTGACGTCGTGCAGCTTTTGGAAGTCGTACTTGCCTTGGTCG 441638 Query 116410 TCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTA 116469 | | ||| | || ||||| | || || || || || || | ||| || Sbjct 441639 TAGTCCACAAAGGCGGGCAGGGCAAGGGAGGCAAGGTTGCAGACGGCAACCTCGTCGGGG 441698 Query 116470 TCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTT 116529 | | |||||| ||||| || || || | || || || |||||| ||||||||||| Sbjct 441699 GCCGAGTACTCGATAATCTCGGTGCAGAGGTTGGAGCTGCGAATGGTTCCCAAGTTCTTC 441758 Query 116530 TGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTT 116589 || || ||| |||| || ||||||||| |||||| | || | || ||||| || Sbjct 441759 TGGTTGCTCTTCCTGTTGCAATGATCCTTGTACAGCATAAAGGGGTTGCCAGTCTCGGTC 441818 Query 116590 TGGGACTTGAGAATAGCCTTCCATA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCC 116648 || | || ||| || | | ||| | | || | ||| | | || | | | || || Sbjct 441819 TGAGCCTCGAGGATCGAGTACCACAGCTTCTG-GGCGCGGATTGTCTTGCGGCCACGGCC 441877 Query 116649 CTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGC-CTCTGAGAGCC 116707 || |||||||||| || | ||||||||||| || || ||| || | ||||| Sbjct 441878 TTCGCGCTCGTACTTTTCATACAAAGCCTCAAACTCGTC-GCCGTAGCAGTCGGCGAGCC 441936 Query 116708 CTGGTGCCTT-ATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATG 116766 | || || || | || || | ||| | ||| | ||| || ||| || ||||||||| Sbjct 441937 CAGG-GCATTCGTTGGGGCACATGAGGGTCCAGTCGCCATTCTTCTCGACACGCTTCATG 441995 Query 116767 AAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCC 116826 |||||||| |||||||| ||||| |||||| || ||| ||| |||| || | || Sbjct 441996 AAGAGGTCGGGGATCCACAGCGCAAGGAAGAGGTCGCGAGCGCGGACTTCCTCCTTGCCG 442055 Query 116827 TGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACC 116886 || || | | || | || || | || ||| |||||||| || |||||||| | Sbjct 442056 TGGTTCTTTCTGAGATCAAGGAATTCAAAGACATCGGCGTGCCAGGGCTCCAGGTAGATG 442115 Query 116887 GCGATTGACCCC--TTGCGACGACCAGCC-TGGTTTACATACCTCGCCGTTGCGTTAAAT 116943 |||| | ||| | || | ||| |||| || || || || || ||| || Sbjct 442116 GCGAAGGCGCCCGGTCGCTTGTTGCCGCCTTGGTCGACGTATCTGGCAGTGTTGTTGAAG 442175 Query 116944 ACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTG 117003 || || ||||| |||| || || | || ||| || || || ||| || | Sbjct 442176 ACTCGCAGCATGGGAACGACGCCGTTCGAGGTGCCGTTGGTGCCGGCAATGTAGGATCCG 442235 Query 117004 TTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCG 117063 | || | | ||||| || || || ||||| || ||| || || || ||| Sbjct 442236 GTAGCACGAATGCGGTGGACGTTCAGGCCGATACCGCCGGCCATTTTAGAAATCATGGCG 442295 Query 117064 CACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAG 117123 || | ||||| || ||||||| || ||||| ||| |||| | ||| ||||||| Sbjct 442296 CAAGTCTTGAGAGTGTCGTAGATGCCCTCGATGCTGTCTTCCTTCATGTCGACGAGGAAG 442355 Query 117124 CAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATG 117183 || || | || | || || || |||||||||||||| |||| |||||| || Sbjct 442356 CACGAGGAAAGCTGACACTGAGGCGTGCCCGCGTTGAAGAGGGTAGGTGAGGCGTGGGTG 442415 Query 117184 AACA--TACCTTGGGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGT 117241 || | | || |||||| | |||||| |||| ||| ||||| || || Sbjct 442416 AAGAATTTACT--GGACATGAGGTTGTAGGTTTCCAGGACGCGCTCAATGTTGTCTCCCC 442473 Query 117242 GAATACCGATTGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGA 117301 || |||| | || ||||| | ||||| || ||| ||| | | | || || | Sbjct 442474 AGATGCCGACAGCAACACGCATGATCATGTGCTGAGGTCGTTCGACAATCTTGCCGTCCA 442533 Query 117302 GCCTCTGGAGGTAACTCTTCTCCAAGGTCTTGAGACCAAAATA 117344 || || |||| || ||||| ||||||| |||||| || Sbjct 442534 GCTTCAGGAGATACGATCGCTCCAGCGTCTTGAAACCAAAGTA 442576 >seq1 Length=2302571 Score = 95.1 bits (104), Expect = 1e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| || ||| | ||||||||||||||| |||||||| || |||||| || || Sbjct 1624962 GCAAAGTCGGTGTGCAAACCCTCGTCACGGGATATGAGTTCGTTTGAGAAGGTAAGCCCG 1624903 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 |||||||| || |||||||| | ||| || || | |||| ||| ||||||||| Sbjct 1624902 GGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGACGCGAATGCACCACTGAAGAAGATG 1624843 Query 127640 CCCTCCACACACGCGAACGCAA 127661 ||||| ||| ||||| |||| Sbjct 1624842 CCCTCGACAGCGGCGAAGGCAA 1624821 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613503756690840