Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09]
449 sequences; 39,397,682 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq2 232 8e-56
seq1 95.1 1e-14
>seq2
Length=1075658
Score = 232 bits (256), Expect = 8e-56
Identities = 1167/1843 (63%), Gaps = 31/1843 (2%)
Strand=Plus/Plus
Query 115519 TCAAGGCTGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTC 115578
|||| | ||||||| ||||| ||| ||| | | || | ||||||||| || |||
Sbjct 440748 TCAACGGTGAACTGGATGGGGGCCGCGGCGGCTTGCGTGCGCAAGTAGTACATGCCAGTC 440807
Query 115579 TTGAGCCCCTGCTTCCA---GGCATACATATGCATTGAGGACAACTTGGAGAGTGTTGGA 115635
||||| ||| ||||||| |||| | ||||| || | | |||| | |||||
Sbjct 440808 TTGAGACCCAGCTTCCACCCGGCAAAG---TGCATCGACGTGATCTTGCCCATGGTTGGG 440864
Query 115636 CTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCC 115695
| |||| | ||| | | ||||| || ||||| ||| || || || || |||
Sbjct 440865 TCCTTCATGTGAATGTTGAGAGACTGGGACTGGTCGATAAAGGCACCGCGGTCGGCGGCC 440924
Query 115696 ATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAGGTTCTTAATATCA 115755
|| | | ||||| | | |||||||| || || |||| || ||| | ||
Sbjct 440925 ATCTGCACCACATGACGCTGCGAAATTTCCCAGACCGTCTTGTACAGAGCCTTTACCTCG 440984
Query 115756 TCTGGGATATCCACGATATTTTGGATAGAGCCACCTGCCTTGACCATGA---GATCCTTC 115812
| || || | ||| || ||||| ||||| || | | |||| ||| ||||
Sbjct 440985 CCGGGAATGTTGGGGATGTTCTGGATCGAGCCGTT---CTCGGCAATGATGCGATTCTTC 441041
Query 115813 ATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCTCCACGAGGTGCTTATTGACAACA 115872
|| | | |||||| ||||| || | |||||||| | || ||||| ||
Sbjct 441042 ATGGCGTCTGACCACAGACCCATGTCGACGAGATCCTTGAGAAGCCATGGGTTGACGACC 441101
Query 115873 ACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGCTCAAAGCAC 115932
||||| ||||| ||| ||||| | | || ||||||| |||||| ||||| ||||||
Sbjct 441102 TGGAACTCGCCCGCCAGGACGCGTCGCTGGTAAATGTTGGACGTGTAGGGCTCGAAGCAC 441161
Query 115933 TCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTG 115992
|| ||||| |||| || || | ||||| || ||||||||||| || | || || |
Sbjct 441162 TCGTTGTTGCCCAGAATCTGCGACGTGGACGCCGTGGGCATGGGCGCGAGCAGCAGCGAG 441221
Query 115993 TTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTC---GTAGTTGAGC 116049
||||| | || | || | || | |||||||||| ||||| || ||| | |
Sbjct 441222 TTGCGAATCCCGTGCTCCTTGATCTGCTCCTTGAGGGAATCCCACTCCCACAAGTCGGAC 441281
Query 116050 TTTGTCTCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCA 116109
| | | | | |||||| |||||||| ||||| |||| || || || |||||||
Sbjct 441282 ---GGCGTCACGTTCCACATGTCAAACTGCAGGATGCCTTCAGAGGCCGGAGATCCCTTG 441338
Query 116110 AATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGA 116169
|| || || || ||||| ||| |||| || |||| | ||| |||||
Sbjct 441339 AACGTGGAGTAGGGACCCTCCTCCTTGGCCAGCTCCACCGACGCCGTCAAGGCGGCGTGG 441398
Query 116170 TACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGA 116229
|| || ||||||||||| | |||| | |||||| || ||||| | |
Sbjct 441399 TAGATGGTCTCAAAAATCTGCTTGTTCAGCTCGCGAGCCTCGGGAGACTCAAAGGGCATG 441458
Query 116230 CGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTC 116289
|| | || || | || || | ||||| ||||||| ||||| || ||||| | |
Sbjct 441459 CGAAGCGCAAGGAAGGCGTCGGCCAAGCCTTGAACACCGACACCAATGGGACGATGCCGC 441518
Query 116290 ATATTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGA 116349
|| || || || || | ||||| || || ||||| | | | || |||
Sbjct 441519 ATGTTGCTGTTGCGTGCTTCTTGGACGGGGTAGTGGTTGACGTCGATGATCTTGTTGAGA 441578
Query 116350 TTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCT 116409
||| | || || |||| || || ||||||| | | || | ||| ||
Sbjct 441579 TTTCGGACAACCACGCGGGTGACGTCGTGCAGCTTTTGGAAGTCGTACTTGCCTTGGTCG 441638
Query 116410 TCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTA 116469
| | ||| | || ||||| | || || || || || || | ||| ||
Sbjct 441639 TAGTCCACAAAGGCGGGCAGGGCAAGGGAGGCAAGGTTGCAGACGGCAACCTCGTCGGGG 441698
Query 116470 TCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTT 116529
| | |||||| ||||| || || || | || || || |||||| |||||||||||
Sbjct 441699 GCCGAGTACTCGATAATCTCGGTGCAGAGGTTGGAGCTGCGAATGGTTCCCAAGTTCTTC 441758
Query 116530 TGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTT 116589
|| || ||| |||| || ||||||||| |||||| | || | || ||||| ||
Sbjct 441759 TGGTTGCTCTTCCTGTTGCAATGATCCTTGTACAGCATAAAGGGGTTGCCAGTCTCGGTC 441818
Query 116590 TGGGACTTGAGAATAGCCTTCCATA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCC 116648
|| | || ||| || | | ||| | | || | ||| | | || | | | || ||
Sbjct 441819 TGAGCCTCGAGGATCGAGTACCACAGCTTCTG-GGCGCGGATTGTCTTGCGGCCACGGCC 441877
Query 116649 CTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGC-CTCTGAGAGCC 116707
|| |||||||||| || | ||||||||||| || || ||| || | |||||
Sbjct 441878 TTCGCGCTCGTACTTTTCATACAAAGCCTCAAACTCGTC-GCCGTAGCAGTCGGCGAGCC 441936
Query 116708 CTGGTGCCTT-ATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATG 116766
| || || || | || || | ||| | ||| | ||| || ||| || |||||||||
Sbjct 441937 CAGG-GCATTCGTTGGGGCACATGAGGGTCCAGTCGCCATTCTTCTCGACACGCTTCATG 441995
Query 116767 AAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCC 116826
|||||||| |||||||| ||||| |||||| || ||| ||| |||| || | ||
Sbjct 441996 AAGAGGTCGGGGATCCACAGCGCAAGGAAGAGGTCGCGAGCGCGGACTTCCTCCTTGCCG 442055
Query 116827 TGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACC 116886
|| || | | || | || || | || ||| |||||||| || |||||||| |
Sbjct 442056 TGGTTCTTTCTGAGATCAAGGAATTCAAAGACATCGGCGTGCCAGGGCTCCAGGTAGATG 442115
Query 116887 GCGATTGACCCC--TTGCGACGACCAGCC-TGGTTTACATACCTCGCCGTTGCGTTAAAT 116943
|||| | ||| | || | ||| |||| || || || || || ||| ||
Sbjct 442116 GCGAAGGCGCCCGGTCGCTTGTTGCCGCCTTGGTCGACGTATCTGGCAGTGTTGTTGAAG 442175
Query 116944 ACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTG 117003
|| || ||||| |||| || || | || ||| || || || ||| || |
Sbjct 442176 ACTCGCAGCATGGGAACGACGCCGTTCGAGGTGCCGTTGGTGCCGGCAATGTAGGATCCG 442235
Query 117004 TTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCG 117063
| || | | ||||| || || || ||||| || ||| || || || |||
Sbjct 442236 GTAGCACGAATGCGGTGGACGTTCAGGCCGATACCGCCGGCCATTTTAGAAATCATGGCG 442295
Query 117064 CACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAG 117123
|| | ||||| || ||||||| || ||||| ||| |||| | ||| |||||||
Sbjct 442296 CAAGTCTTGAGAGTGTCGTAGATGCCCTCGATGCTGTCTTCCTTCATGTCGACGAGGAAG 442355
Query 117124 CAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATG 117183
|| || | || | || || || |||||||||||||| |||| |||||| ||
Sbjct 442356 CACGAGGAAAGCTGACACTGAGGCGTGCCCGCGTTGAAGAGGGTAGGTGAGGCGTGGGTG 442415
Query 117184 AACA--TACCTTGGGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGT 117241
|| | | || |||||| | |||||| |||| ||| ||||| || ||
Sbjct 442416 AAGAATTTACT--GGACATGAGGTTGTAGGTTTCCAGGACGCGCTCAATGTTGTCTCCCC 442473
Query 117242 GAATACCGATTGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGA 117301
|| |||| | || ||||| | ||||| || ||| ||| | | | || || |
Sbjct 442474 AGATGCCGACAGCAACACGCATGATCATGTGCTGAGGTCGTTCGACAATCTTGCCGTCCA 442533
Query 117302 GCCTCTGGAGGTAACTCTTCTCCAAGGTCTTGAGACCAAAATA 117344
|| || |||| || ||||| ||||||| |||||| ||
Sbjct 442534 GCTTCAGGAGATACGATCGCTCCAGCGTCTTGAAACCAAAGTA 442576
>seq1
Length=2302571
Score = 95.1 bits (104), Expect = 1e-14
Identities = 106/142 (75%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579
||||| || ||| | ||||||||||||||| |||||||| || |||||| || ||
Sbjct 1624962 GCAAAGTCGGTGTGCAAACCCTCGTCACGGGATATGAGTTCGTTTGAGAAGGTAAGCCCG 1624903
Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639
|||||||| || |||||||| | ||| || || | |||| ||| |||||||||
Sbjct 1624902 GGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGACGCGAATGCACCACTGAAGAAGATG 1624843
Query 127640 CCCTCCACACACGCGAACGCAA 127661
||||| ||| ||||| ||||
Sbjct 1624842 CCCTCGACAGCGGCGAAGGCAA 1624821
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613503756690840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |