Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09]
449 sequences; 39,397,682 total letters
Query= NC_013668.3
Length=248526
Score E
Sequences producing significant alignments: (Bits) Value
seq2 181 2e-40
seq1 105 1e-17
>seq2
Length=1075658
Score = 181 bits (200), Expect = 2e-40
Identities = 460/690 (67%), Gaps = 30/690 (4%)
Strand=Plus/Plus
Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTT-CTCAGATAGTACATGC 203897
|| ||| || |||||||| |||| | | |||| ||| ||| | | || ||||||||||
Sbjct 440744 CTGGTCAACGGTGAACTGGATGGGGGCCGCGGC-GGCTTGCGTGCGCAAGTAGTACATGC 440802
Query 203898 CGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGG 203957
| ||||| || ||| || ||||||| | |||||| || | | |||| || | | |
Sbjct 440803 CAGTCTTGAGACCCAGCTTCCACCCGGCAAAGTGCATCGACGTGATCTTGCCCATGGTTG 440862
Query 203958 GGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCG 204016
|||| |||||||||||| ||||||||| |||||||| |||||| || || || |||
Sbjct 440863 GGTCCTTCATGTGAATGTTGAGAGACTGGGACTGGTCGAT-AAAGGCACCGCGGTCGGCG 440921
Query 204017 GCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAAC---------ACG 204067
||||| | | | ||||||||| ||||| ||||||||| || ||
Sbjct 440922 GCCATCTGCACCACATGACGCTGCGAAATTTCCCAGACCGTCTTGTACAGAGCCTTTACC 440981
Query 204068 TC-TCTGGTGTGTTGAGGCACATCTTCCCACGTCCTGATCGAGCCGTTGTCGGCCATCAG 204126
|| | || ||||| || || | || |||||||||||| ||||| || |
Sbjct 440982 TCGCCGGGAATGTTGGGG---ATGT-------TCTGGATCGAGCCGTTCTCGGCAATGAT 441031
Query 204127 TCTCATCCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGG 204186
| || || | | || ||||| |||| || || ||| | || ||
Sbjct 441032 GCGATTCTTCATGGCGTCTGACCACAGACCCATGTCGACGAGATCCTTGAGAAGCCATGG 441091
Query 204187 GTTGATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGG 204246
||||| || ||| || || || | ||| || | ||| | | | |||| ||| | ||
Sbjct 441092 GTTGACGACCTGGAACTCGCCCGCCAGGACGCGTCGCTGGTAAATGTTGGACGTGTAGGG 441151
Query 204247 TTCGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAG 204306
||||| |||||||||||| | |||||| | ||| |||||||||||||| || ||
Sbjct 441152 CTCGAAGCACTCGTTGTTGCCCAGAATCTGCGACGTGGACGCCGTGGGCATGGGCGCGAG 441211
Query 204307 GAGCAGGGAGTTGCGCACACCGTATTTTTGGACCCTGC-GCTTCAGAGAGGTCCAGTCGT 204365
||||| |||||||| | |||| | | || |||| ||| || || ||| ||
Sbjct 441212 CAGCAGCGAGTTGCGAATCCCGTGCTCCTTGA-TCTGCTCCTTGAGGGAATCCCACTCCC 441270
Query 204366 GCA--TCGCACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGG 204423
|| ||| || || ||||| ||||||||| ||||| | |||||||| | | | ||
Sbjct 441271 ACAAGTCGGAC--GGCGTCACGTTCCACATGTCAAACTGCAGGATGCCTTCAGAGGCCGG 441328
Query 204424 GCTGCCCTTGTACGTCGGATAAGGCTGATCCTCTTCTGCCAGCTTGCACGAGGCGGCCAT 204483
|||||| |||| | || || ||||| | ||||||| ||| || | ||
Sbjct 441329 AGATCCCTTGAACGTGGAGTAGGGACCCTCCTCCTTGGCCAGCTCCACCGACGCCGTCAA 441388
Query 204484 GGCGTGATAGTACATGGTCTCAAAGATCTG 204513
|||| | ||| ||||||||||| |||||
Sbjct 441389 GGCGGCGTGGTAGATGGTCTCAAAAATCTG 441418
>seq1
Length=2302571
Score = 105 bits (116), Expect = 1e-17
Identities = 115/153 (75%), Gaps = 0/153 (0%)
Strand=Plus/Minus
Query 159916 CAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACAT 159975
||| ||||| ||||||||| ||||| |||||||| || || |||| ||||| || |
Sbjct 1624972 CAGCAGGCATGCAAAGTCGGTGTGCAAACCCTCGTCACGGGATATGAGTTCGTTTGAGAA 1624913
Query 159976 GATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCT 160035
| | || || ||||||| || ||| ||||||||||| |||| ||| || ||||| ||
Sbjct 1624912 GGTAAGCCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGACGCGAATGCACCACT 1624853
Query 160036 AAAAAAGATCCCCTCCACGGCCGCAAACGCCAC 160068
|| ||||| ||||| || || || || || ||
Sbjct 1624852 GAAGAAGATGCCCTCGACAGCGGCGAAGGCAAC 1624820
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 795150737191440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |