Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09] 449 sequences; 39,397,682 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq2 181 2e-40 seq1 105 1e-17 >seq2 Length=1075658 Score = 181 bits (200), Expect = 2e-40 Identities = 460/690 (67%), Gaps = 30/690 (4%) Strand=Plus/Plus Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTT-CTCAGATAGTACATGC 203897 || ||| || |||||||| |||| | | |||| ||| ||| | | || |||||||||| Sbjct 440744 CTGGTCAACGGTGAACTGGATGGGGGCCGCGGC-GGCTTGCGTGCGCAAGTAGTACATGC 440802 Query 203898 CGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGG 203957 | ||||| || ||| || ||||||| | |||||| || | | |||| || | | | Sbjct 440803 CAGTCTTGAGACCCAGCTTCCACCCGGCAAAGTGCATCGACGTGATCTTGCCCATGGTTG 440862 Query 203958 GGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCG 204016 |||| |||||||||||| ||||||||| |||||||| |||||| || || || ||| Sbjct 440863 GGTCCTTCATGTGAATGTTGAGAGACTGGGACTGGTCGAT-AAAGGCACCGCGGTCGGCG 440921 Query 204017 GCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAAC---------ACG 204067 ||||| | | | ||||||||| ||||| ||||||||| || || Sbjct 440922 GCCATCTGCACCACATGACGCTGCGAAATTTCCCAGACCGTCTTGTACAGAGCCTTTACC 440981 Query 204068 TC-TCTGGTGTGTTGAGGCACATCTTCCCACGTCCTGATCGAGCCGTTGTCGGCCATCAG 204126 || | || ||||| || || | || |||||||||||| ||||| || | Sbjct 440982 TCGCCGGGAATGTTGGGG---ATGT-------TCTGGATCGAGCCGTTCTCGGCAATGAT 441031 Query 204127 TCTCATCCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGG 204186 | || || | | || ||||| |||| || || ||| | || || Sbjct 441032 GCGATTCTTCATGGCGTCTGACCACAGACCCATGTCGACGAGATCCTTGAGAAGCCATGG 441091 Query 204187 GTTGATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGG 204246 ||||| || ||| || || || | ||| || | ||| | | | |||| ||| | || Sbjct 441092 GTTGACGACCTGGAACTCGCCCGCCAGGACGCGTCGCTGGTAAATGTTGGACGTGTAGGG 441151 Query 204247 TTCGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAG 204306 ||||| |||||||||||| | |||||| | ||| |||||||||||||| || || Sbjct 441152 CTCGAAGCACTCGTTGTTGCCCAGAATCTGCGACGTGGACGCCGTGGGCATGGGCGCGAG 441211 Query 204307 GAGCAGGGAGTTGCGCACACCGTATTTTTGGACCCTGC-GCTTCAGAGAGGTCCAGTCGT 204365 ||||| |||||||| | |||| | | || |||| ||| || || ||| || Sbjct 441212 CAGCAGCGAGTTGCGAATCCCGTGCTCCTTGA-TCTGCTCCTTGAGGGAATCCCACTCCC 441270 Query 204366 GCA--TCGCACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGG 204423 || ||| || || ||||| ||||||||| ||||| | |||||||| | | | || Sbjct 441271 ACAAGTCGGAC--GGCGTCACGTTCCACATGTCAAACTGCAGGATGCCTTCAGAGGCCGG 441328 Query 204424 GCTGCCCTTGTACGTCGGATAAGGCTGATCCTCTTCTGCCAGCTTGCACGAGGCGGCCAT 204483 |||||| |||| | || || ||||| | ||||||| ||| || | || Sbjct 441329 AGATCCCTTGAACGTGGAGTAGGGACCCTCCTCCTTGGCCAGCTCCACCGACGCCGTCAA 441388 Query 204484 GGCGTGATAGTACATGGTCTCAAAGATCTG 204513 |||| | ||| ||||||||||| ||||| Sbjct 441389 GGCGGCGTGGTAGATGGTCTCAAAAATCTG 441418 >seq1 Length=2302571 Score = 105 bits (116), Expect = 1e-17 Identities = 115/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 159916 CAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACAT 159975 ||| ||||| ||||||||| ||||| |||||||| || || |||| ||||| || | Sbjct 1624972 CAGCAGGCATGCAAAGTCGGTGTGCAAACCCTCGTCACGGGATATGAGTTCGTTTGAGAA 1624913 Query 159976 GATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCT 160035 | | || || ||||||| || ||| ||||||||||| |||| ||| || ||||| || Sbjct 1624912 GGTAAGCCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGACGCGAATGCACCACT 1624853 Query 160036 AAAAAAGATCCCCTCCACGGCCGCAAACGCCAC 160068 || ||||| ||||| || || || || || || Sbjct 1624852 GAAGAAGATGCCCTCGACAGCGGCGAAGGCAAC 1624820 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795150737191440