Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09] 449 sequences; 39,397,682 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq56 145 2e-29 seq67 109 1e-18 seq13 104 6e-17 >seq56 Length=194926 Score = 145 bits (160), Expect = 2e-29 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || ||||| || || |||||||| |||| ||||||||| ||||| || Sbjct 69846 CGGAGACGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAATGTT 69787 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||| || || |||||||| ||||| ||||| || ||||||||||| || ||| ||| Sbjct 69786 CGTCCGTCCTCGAGCTGCTTGCCGGCAAAGATAAGTCGCTGCTGGTCGGGGGGAATCCCT 69727 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || |||||||| ||| ||| || | |||||||| | || || |||| | Sbjct 69726 TCCTTGTCTTGAATCTTCGACTTGACGTTGTCAATGGTGTCTGACGACTCAACTTCCAGC 69667 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || ||||| || || || ||||| ||||| Sbjct 69666 GTGATTGTTTTTCCCGTCAGTGTCTTGACAAAGATTTG 69629 Score = 111 bits (122), Expect = 4e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || ||||| | |||||||||||||| | ||||||||| || | || || ||||| Sbjct 70065 AGCACCAGGTGCAACGTCGACTCCTTTTGAATGTTGTAGTCGGCTAGGGTTCTCCCATCC 70006 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || || |||||||| |||||||| || ||| ||| || || || Sbjct 70005 TCAAGCTGCTTACCAGCAAAGATGAGTCGCTGCTGATCAGGAGGAATGCCCTCCTTGTCT 69946 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 ||||| || |||||| || | ||| || | | || || || | |||||| ||| Sbjct 69945 TGAATTTTCGACTTCACATTATCAATGGTATCAGACGACTCCACCTCGAGCGTGATGGTC 69886 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || || || ||||| || Sbjct 69885 TTCCCGGTCAGCGTCTTGACGAAAATCTG 69857 Score = 93.3 bits (102), Expect = 1e-13 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || || || || || || ||||| |||| ||||||||| |||| || | |||||| Sbjct 69381 AGAACCAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCATCT 69322 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || ||||| || || || ||||| | ||||||||||| || || || || || Sbjct 69321 TCGAGCTGTTTACCAGCAAAGATCAAGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCT 69262 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 ||||| || ||| || |||| |||||| | | || || || | ||||| ||| Sbjct 69261 TGAATTTTCGACTTGACATTGTCGATGGTGTCAGAAGACTCCACCTCGAGGGTGATGGTC 69202 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || || || ||||| Sbjct 69201 TTTCCGGTGAGGGTCTTTACGAAGATTTG 69173 >seq67 Length=171618 Score = 109 bits (120), Expect = 1e-18 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || | ||| || || |||||| |||| ||||||||| |||| || Sbjct 155693 CGCAGGCGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGCCAGGGTG 155752 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || |||||||| || || |||||||| ||||||||||| || || || Sbjct 155753 CGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCC 155812 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| || |||| |||||| | | || || || | Sbjct 155813 TCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCGAGG 155872 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| |||||||| || || || ||||| || Sbjct 155873 GTGATGGTCTTCCCCGTGAGGGTCTTGACGAAAATCTG 155910 >seq13 Length=702126 Score = 104 bits (114), Expect = 6e-17 Identities = 132/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499 |||| || | ||||||||| |||| || | ||||| ||||||||||| || || |||| Sbjct 289257 CCTTCTGAATGTTGTAGTCGGCCAGGGTTCGGCCATCCTCCAGCTGCTTGCCAGCAAAGA 289198 Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATT 199559 | | |||||||||||| ||| || || || ||||| ||||| ||| || | Sbjct 289197 TCAAACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 289138 Query 199560 CGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAA 199619 ||| ||||| | | || || || | |||||| ||||| ||||| || || ||||||| Sbjct 289137 CGATCGTGTCGGAGGACTCGACCTCGAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAA 289078 Query 199620 AA 199621 || Sbjct 289077 AA 289076 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178914817885083