Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09]
449 sequences; 39,397,682 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq1 199 4e-46
seq67 147 2e-30
seq56 127 2e-24
seq13 93.3 4e-14
>seq1
Length=2302571
Score = 199 bits (220), Expect = 4e-46
Identities = 354/506 (70%), Gaps = 14/506 (3%)
Strand=Plus/Minus
Query 132604 TTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGC 132663
|| || ||||| || || ||||||||||| || || || || ||| ||| || |
Sbjct 1625256 TTCTGGTATTCACCAACTCGCTTCTCAAAAAAGTTGGTCTTGCCACCCAGGGAGATATTC 1625197
Query 132664 GTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGG---TGCCGATCAGGTCGACG 132720
||||||||| || || || ||||| ||||| ||| | |||| || | ||
Sbjct 1625196 TCCATAAAATCAAACGGATTCGCTGTCTTGTACACCTTTTCATTCCCGAG-AG--CAACC 1625140
Query 132721 AGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGC 132780
| ||| | |||||| ||||| |||||||||||| ||| | | | || | || ||
Sbjct 1625139 AACAGGCGGTCGGCAACGAATTCGATGTATTGCTTCATCAGTGTGGAGTTCATGCCGAGA 1625080
Query 132781 AGA-CGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGAC 132839
||| ||||| ||||| || || || || || |||||| |||| ||| || |||||||
Sbjct 1625079 AGAGCGCAC-GGCAGAGCCTCCGTCAGGAAATCTTGCTCAATGGTGACGGCATCGGTGAT 1625021
Query 132840 GATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGC 132899
|||||| | | | ||| | | |||| | ||| | || || ||| ||
Sbjct 1625020 GATTTCTTGGATGATTTGCTTGCTTGCTCTTTGCTTGAGATGAGAGTGCAGCAGGCATGC 1624961
Query 132900 AAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGG 132959
||||||| ||||| |||||||| | ||| ||||||||||| ||| || | |||||
Sbjct 1624960 AAAGTCGGTGTGCAAACCCTCGTCACGGGATATGAGTTCGTTTGAGAAGGTAAGCCCGGG 1624901
Query 132960 CATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGA--AAAGAAGACG 133017
|||||||||||| || ||||||||||| |||| ||||| ||| | | ||||||| |
Sbjct 1624900 CATGAGGCCGCGCTTCTTGAGCCAAAAGATGGACGCGAA--TGCACCACTGAAGAAGATG 1624843
Query 133018 CCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAA-CGTGGCTTCTTTGCTGGCGAT 133076
|||||||| || ||||| || |||| || | | |||| | | || ||| || | |||
Sbjct 1624842 CCCTCGACAGCGGCGAAGGCAACCAATCGTTGGGCGAAGCTAGACTCCTTGTCTTG-GAT 1624784
Query 133077 CCAGCGCAGCGCCCATTCGGCCTTTT 133102
|||||| | ||||| ||||||||||
Sbjct 1624783 CCAGCGGATGGCCCAGTCGGCCTTTT 1624758
Score = 125 bits (138), Expect = 7e-24
Identities = 193/275 (70%), Gaps = 3/275 (1%)
Strand=Plus/Minus
Query 133168 TAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAG 133227
|| |||||||| | |||||| | || || || | |||||||| ||| || ||
Sbjct 1624626 TACGTGTCGATCAATAAAGAATACGTCTCGGAATGGATATTCTCCATCATGATCTGGAAC 1624567
Query 133228 CCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTT 133287
||||| || || || || || |||||||| || ||| ||||| ||||| |||
Sbjct 1624566 CCGTAGAAACAACGGGCTTCAGGAACCTGCACCTCGCCGCTGAACCGCTCAACCAGGTTT 1624507
Query 133288 TCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGC 133347
|||||||||||||| || ||| || || || |||| | ||| |||||||
Sbjct 1624506 TCGTTGACGATGCCATCCGAGGCAGCAAAGAATGCCAAGATGTGAGAAATGAAATACTTT 1624447
Query 133348 TCGTTGTCGTTCAAGCG---CTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCG 133404
|| | |||||||| ||| | ||||||| || |||||||||||||| | ||| |||
Sbjct 1624446 TCATCGTCGTTCAGGCGATTATTCCAGTCGTGCAAATCCTTGGACAGGTCTATCTCTTCG 1624387
Query 133405 ACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439
| ||||| || || ||||| || || ||||||||
Sbjct 1624386 GCTGTCCAGAAAGAAGCCTCAGCCTTCTTGTACAT 1624352
>seq67
Length=171618
Score = 147 bits (162), Expect = 2e-30
Identities = 175/235 (74%), Gaps = 2/235 (1%)
Strand=Plus/Minus
Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300
|| ||||| || ||||| || || |||||||| || ||||||||| |||| || ||| |
Sbjct 155916 AAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACCATCACCCTCGAGGTGGAGTCT 155857
Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360
|||||| | | | | | || || |||| ||||| ||||| || ||| |||||
Sbjct 155856 TCCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGAC 155797
Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420
|| ||||| ||||| | || ||||| ||||| || || | |||||||| |||||||
Sbjct 155796 CAGCAGCGACTCATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTGGCCGACTAC 155737
Query 38421 AACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCCGC 38474
|||||||| ||||| ||| || ||||| ||||||||||| || | || ||| ||
Sbjct 155736 AACATCCAGAAGGAGAGC-ACCCTGCACTTGGTGCTGCGCCTGCGCGGTGGCGGC 155683
>seq56
Length=194926
Score = 127 bits (140), Expect = 2e-24
Identities = 165/228 (72%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || ||||| || || ||||||||| | || || ||| | ||
Sbjct 69398 ATGCAGATCTTCGTCAAGACCCTCACTGGGAAGACCATCACCCTGGAGGTGGAGTCTTCC 69457
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | | | | || | ||||||| ||||| ||||| || || |||||||
Sbjct 69458 GACACCATCGACAATGTCAAGGCGAAAATCCAAGACAAGGAGGGCATCCCGCCCGACCAG 69517
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
|| || | || | || |||||||| || || |||| |||||||| ||||||||||
Sbjct 69518 CAACGCTTGATCTTTGCTGGCAAACAACTCGAAGACGGCCGCACCCTGGCCGACTACAAC 69577
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471
||||| |||||| | || || ||| | || ||||| || | ||||||
Sbjct 69578 ATCCAGAAGGAATCCACCCTCCATCTCGTTCTGCGCCTGCGCGGCGGC 69625
Score = 125 bits (138), Expect = 7e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||| |||||||| || ||||| || || ||||||||| |||| || ||| | |
Sbjct 69170 ATGCAAATCTTCGTAAAGACCCTCACCGGAAAGACCATCACCCTCGAGGTGGAGTCTTCT 69229
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | | | | || ||||| | ||||| ||||| || || |||||||
Sbjct 69230 GACACCATCGACAATGTCAAGTCGAAAATTCAAGACAAGGAGGGCATCCCGCCCGACCAG 69289
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||||| | || | || || |||||||| || || | |||||||| ||||||||||
Sbjct 69290 CAGCGCTTGATCTTTGCTGGTAAACAGCTCGAAGATGGCCGCACCCTGGCCGACTACAAC 69349
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
||||| |||||| | || || ||| |||| || || || | |||||
Sbjct 69350 ATCCAGAAGGAATCCACCCTTCATCTGGTTCTTCGCCTGCGTGGCGG 69396
Score = 113 bits (124), Expect = 5e-20
Identities = 164/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||| || || || || || ||||| ||||| ||||| | || || ||| | |
Sbjct 69626 ATGCAAATCTTTGTCAAGACACTGACGGGAAAAACAATCACGCTGGAAGTTGAGTCGTCA 69685
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | | |||| | || || || | ||||| || || |||||| |||||||
Sbjct 69686 GACACCATTGACAACG-TCAAGTCGAAGATTCAAGACAAGGAAGGGATTCCCCCCGACCA 69744
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| || || | || ||||| ||||| || |||| || || | |||||||||
Sbjct 69745 GCAGCGACTTATCTTTGCCGGCAAGCAGCTCGAGGACGGACGAACATTGGCCGACTACAA 69804
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471
|||||| ||||| | || ||||| ||||||||||| | | ||||||
Sbjct 69805 CATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGTCTCCGCGGCGGC 69853
Score = 107 bits (118), Expect = 2e-18
Identities = 161/229 (70%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || ||||| || || || |||||||| |||| || ||| | |
Sbjct 69854 ATGCAGATTTTCGTCAAGACGCTGACCGGGAAGACCATCACGCTCGAGGTGGAGTCGTCT 69913
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|| | | | | | | || ||||| | ||||| ||||| ||||| | || ||
Sbjct 69914 GATACCATTGATAATGTGAAGTCGAAAATTCAAGACAAGGAGGGCATTCCTCCTGATCAG 69973
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||||| ||||| | || || || ||||| || || | | | ||||| ||||||||||
Sbjct 69974 CAGCGACTCATCTTTGCTGGTAAGCAGCTTGAGGATGGGAGAACCCTAGCCGACTACAAC 70033
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472
|| |||||||| ||||| |||| ||||||| || || | || ||||
Sbjct 70034 ATTCAAAAGGAGTCGACGTTGCACCTGGTGCTCCGCCTGCGTGGTGGCC 70082
>seq13
Length=702126
Score = 93.3 bits (102), Expect = 4e-14
Identities = 129/181 (71%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312
|| || || || || |||||||| |||||||| |||| |||||| || |||||| |
Sbjct 289077 TTTGTGAAGACCCTGACGGGCAAGACCATCACGCTCGAGGTCGAGTCCTCCGACACGATC 289136
Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372
| | | || || |||| ||||| ||||| || || ||||||| ||||| |
Sbjct 289137 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCTCCCGACCAGCAGCGTTTG 289196
Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432
|| | || ||||| |||||||| || | || ||||| |||||||||||| || |||
Sbjct 289197 ATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGAACCCTGGCCGACTACAACATTCAGAAG 289256
Query 38433 G 38433
|
Sbjct 289257 G 289257
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500169992780160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |