Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09] 449 sequences; 39,397,682 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq2 196 6e-45 seq8 104 3e-17 >seq2 Length=1075658 Score = 196 bits (216), Expect = 6e-45 Identities = 458/690 (66%), Gaps = 11/690 (2%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 || || || |||||||||||||| || || || ||||| | ||||| ||||||||||| Sbjct 166778 TCAAAGTCCTCACCACCCAAGTGAGTGTCACCAGCGGTAGACTTGACCTCAAAGATACCC 166837 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | || ||| | | | || |||||||| |||||||| |||||||| ||||| | ||| Sbjct 166838 TCCTCGATGGTCAGGAGAGACACATCAAAGGTACCACCGCCCAGGTCGAAAATCAAGACG 166897 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 || || | || ||||| |||||||| || || || || || || || || || Sbjct 166898 TTGCGCTCACCCTCGACCTTCTTGTCGAGACCATAGGCAATGGCGGCAGCAGTAGGCTCG 166957 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || |||||||| || ||| || || ||||| | || ||||| || || || || Sbjct 166958 TTGATAATACGGAGCACGTTGAGACCGGCAATGAGACCGGCGTCTTTGGTAGCCTGACGC 167017 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 || || || || |||||||| ||||| || ||||| |||| |||| | | ||||| Sbjct 167018 TGAGAGTCATTGAAGTAGGCAGGGACAGTGACGACAGCGTTTGTGATGGTAGTGCCGAGG 167077 Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCA 7816 || || || | || ||| ||||| |||| ||| || || || || || | | | Sbjct 167078 TAGCTCTCGGCAGTCTCACGCATCTTGGTGAGAATCATGGAAGAGATTTCCTCGGGGGTA 167137 Query 7817 AACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCAC----C 7872 || || || || || || || || || || | | ||| || || || | | Sbjct 167138 AAGGTCTTGGTCTCGCCCTTGAACTCGACCTCGACAAGGGGCTT----GCCGCCCTTGTC 167193 Query 7873 GGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTT 7932 | ||| | ||| | | | | ||||| || | || |||| ||| ||||| Sbjct 167194 GCTGATGATCTTGAAGGGGAAGTGCTTCATGTCAGCCTGAACCTCGGCGTCGTTGAACTT 167253 Query 7933 TCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTT 7992 | || || | ||||| || || || || ||||| | ||||||||||| || || Sbjct 167254 GCGGCCAATCAATCGCTTGGCGTCGAAGACAGTGTTGTGAGGGTTCATGGCGACCTGATT 167313 Query 7993 CTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGT 8052 ||| || || || ||||| ||||| || | || || || || ||| |||| || || Sbjct 167314 CTTGGCGGCATCACCGATCAGACGCTC---GGTGTCAGTGAAGGCAACGAACGAAGGAGT 167370 Query 8053 CGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGAC 8112 ||||| || || ||||| || || || || || || || | | ||| ||||| Sbjct 167371 AGTTCGGTTACCCTGGTCATTGGCGATGATGTCGCATCGATCCTCGCGGAAGATACCGAC 167430 Query 8113 GCACGAATACGTTGTTCCTAAATCAATACC 8142 || |||||||| || || | || ||||| Sbjct 167431 ACATGAATACGTGGTACCCAGGTCGATACC 167460 >seq8 Length=887404 Score = 104 bits (114), Expect = 3e-17 Identities = 229/339 (68%), Gaps = 12/339 (4%) Strand=Plus/Minus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 ||| || |||||||| || | || ||||| || ||| | ||| || ||||| | ||| Sbjct 579573 ATCAAAGTCTTCACCGCCAAGATGCGTATCACCGTTGGTGGATTTCACCTCAAAAACACC 579514 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAA-TGAGTA 7574 | || | || | |||| |||||| ||||| ||||| || || | | || | | Sbjct 579513 GTTCTGGATCTCCAAGATGGAAATATCAAAGGTACCGCCACCGAGATCGTAGACTGCG-A 579455 Query 7575 CGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTT 7634 || | ||| | || ||| |||||||| || |||| || || || || || | Sbjct 579454 CGACACTGTCGGCCTC------CTTCTCGAGACCATAAGCGAGGGCTGCGGCAGTAGGCT 579401 Query 7635 CATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTG--CCGCATCTTTCGTCGCTTG 7692 |||| | || || ||| ||| ||||||||||| ||| | |||||||| || ||| Sbjct 579400 CATTGACAACGCGGAGAACGTTGAGGCCAGCAAT--TTGACCAGCATCTTTGGTGCTTTG 579343 Query 7693 TCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACC 7752 ||| || | |||||| |||||||| ||||| || ||||| || | | |||| ||| Sbjct 579342 TCGCTGAGCATCGTTGAAGTAGGCAGGGACAGTGACGACAGCATTCTTGACGGGCTTGGA 579283 Query 7753 GAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAAC 7791 ||| || | || || | || ||||| || | ||||| Sbjct 579282 GAGGTAAGCCTCGGCAGTCTCCTTCATCTTATTGAGAAC 579244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635129235317160