Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09]
449 sequences; 39,397,682 total letters
Query= NC_014765.1
Length=198519
Score E
Sequences producing significant alignments: (Bits) Value
seq2 196 6e-45
seq8 104 3e-17
>seq2
Length=1075658
Score = 196 bits (216), Expect = 6e-45
Identities = 458/690 (66%), Gaps = 11/690 (2%)
Strand=Plus/Plus
Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516
|| || || |||||||||||||| || || || ||||| | ||||| |||||||||||
Sbjct 166778 TCAAAGTCCTCACCACCCAAGTGAGTGTCACCAGCGGTAGACTTGACCTCAAAGATACCC 166837
Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576
| || ||| | | | || |||||||| |||||||| |||||||| ||||| | |||
Sbjct 166838 TCCTCGATGGTCAGGAGAGACACATCAAAGGTACCACCGCCCAGGTCGAAAATCAAGACG 166897
Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636
|| || | || ||||| |||||||| || || || || || || || || ||
Sbjct 166898 TTGCGCTCACCCTCGACCTTCTTGTCGAGACCATAGGCAATGGCGGCAGCAGTAGGCTCG 166957
Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696
|| |||||||| || ||| || || ||||| | || ||||| || || || ||
Sbjct 166958 TTGATAATACGGAGCACGTTGAGACCGGCAATGAGACCGGCGTCTTTGGTAGCCTGACGC 167017
Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756
|| || || || |||||||| ||||| || ||||| |||| |||| | | |||||
Sbjct 167018 TGAGAGTCATTGAAGTAGGCAGGGACAGTGACGACAGCGTTTGTGATGGTAGTGCCGAGG 167077
Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCA 7816
|| || || | || ||| ||||| |||| ||| || || || || || | | |
Sbjct 167078 TAGCTCTCGGCAGTCTCACGCATCTTGGTGAGAATCATGGAAGAGATTTCCTCGGGGGTA 167137
Query 7817 AACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCAC----C 7872
|| || || || || || || || || || | | ||| || || || | |
Sbjct 167138 AAGGTCTTGGTCTCGCCCTTGAACTCGACCTCGACAAGGGGCTT----GCCGCCCTTGTC 167193
Query 7873 GGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTT 7932
| ||| | ||| | | | | ||||| || | || |||| ||| |||||
Sbjct 167194 GCTGATGATCTTGAAGGGGAAGTGCTTCATGTCAGCCTGAACCTCGGCGTCGTTGAACTT 167253
Query 7933 TCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTT 7992
| || || | ||||| || || || || ||||| | ||||||||||| || ||
Sbjct 167254 GCGGCCAATCAATCGCTTGGCGTCGAAGACAGTGTTGTGAGGGTTCATGGCGACCTGATT 167313
Query 7993 CTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGT 8052
||| || || || ||||| ||||| || | || || || || ||| |||| || ||
Sbjct 167314 CTTGGCGGCATCACCGATCAGACGCTC---GGTGTCAGTGAAGGCAACGAACGAAGGAGT 167370
Query 8053 CGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGAC 8112
||||| || || ||||| || || || || || || || | | ||| |||||
Sbjct 167371 AGTTCGGTTACCCTGGTCATTGGCGATGATGTCGCATCGATCCTCGCGGAAGATACCGAC 167430
Query 8113 GCACGAATACGTTGTTCCTAAATCAATACC 8142
|| |||||||| || || | || |||||
Sbjct 167431 ACATGAATACGTGGTACCCAGGTCGATACC 167460
>seq8
Length=887404
Score = 104 bits (114), Expect = 3e-17
Identities = 229/339 (68%), Gaps = 12/339 (4%)
Strand=Plus/Minus
Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515
||| || |||||||| || | || ||||| || ||| | ||| || ||||| | |||
Sbjct 579573 ATCAAAGTCTTCACCGCCAAGATGCGTATCACCGTTGGTGGATTTCACCTCAAAAACACC 579514
Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAA-TGAGTA 7574
| || | || | |||| |||||| ||||| ||||| || || | | || | |
Sbjct 579513 GTTCTGGATCTCCAAGATGGAAATATCAAAGGTACCGCCACCGAGATCGTAGACTGCG-A 579455
Query 7575 CGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTT 7634
|| | ||| | || ||| |||||||| || |||| || || || || || |
Sbjct 579454 CGACACTGTCGGCCTC------CTTCTCGAGACCATAAGCGAGGGCTGCGGCAGTAGGCT 579401
Query 7635 CATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTG--CCGCATCTTTCGTCGCTTG 7692
|||| | || || ||| ||| ||||||||||| ||| | |||||||| || |||
Sbjct 579400 CATTGACAACGCGGAGAACGTTGAGGCCAGCAAT--TTGACCAGCATCTTTGGTGCTTTG 579343
Query 7693 TCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACC 7752
||| || | |||||| |||||||| ||||| || ||||| || | | |||| |||
Sbjct 579342 TCGCTGAGCATCGTTGAAGTAGGCAGGGACAGTGACGACAGCATTCTTGACGGGCTTGGA 579283
Query 7753 GAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAAC 7791
||| || | || || | || ||||| || | |||||
Sbjct 579282 GAGGTAAGCCTCGGCAGTCTCCTTCATCTTATTGAGAAC 579244
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 635129235317160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |