Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09] 449 sequences; 39,397,682 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq2 205 1e-47 seq36 93.3 5e-14 seq1 93.3 5e-14 >seq2 Length=1075658 Score = 205 bits (226), Expect = 1e-47 Identities = 1009/1583 (64%), Gaps = 35/1583 (2%) Strand=Plus/Minus Query 111526 AGAGAGACTACGACTTTGGTTATTTTGGTCTCAAGACCCTCGAGAAAAGCTACCTCCAAA 111585 ||||||||| | ||| | || |||||| ||||||| || ||| | || |||| | Sbjct 442596 AGAGAGACTTCAACTATCAGTACTTTGGTTTCAAGACGCTGGAGCGATCGTATCTCCTGA 442537 Query 111586 GACTGGATGGTGTCTTGATGGAAACCCCACAGTACATGTTCATGCGGGTCGCGATCGGTA 111645 ||||| || | | ||| || ||| ||||| ||||||| || || |||| | Sbjct 442536 AGCTGGACGGCAAGATTGTCGAACGACCTCAGCACATGATCATGCGTGTTGCTGTCGGCA 442477 Query 111646 TCCATGGGGAAGATATTGATTCTGTTTTGGAGACATACGACAAGATGTCCCGTGGTATGT 111705 || || || | ||||| || |||| || ||| || |||||| || | | Sbjct 442476 TCTGGGGAGACAACATTGAGCGCGTCCTGGAAACCTACAACCTCATGTCCAGTAAATTCT 442417 Query 111706 TCATCCACGCAACACCAACCCTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTT 111765 ||| |||||| |||| |||||||||||||| || || || || | ||| | Sbjct 442416 TCACCCACGCCTCACCTACCCTCTTCAACGCGGGCACGCCTCAGTGTCAGCTTTCCTCGT 442357 Query 111766 GTTTCCTTATTGCAAACAAGGAGGATTCAATCAATGGCATTTACGGCACTCTCACTGAAT 111825 | ||||| | | | ||||| || ||| | ||||| |||| |||||||| | Sbjct 442356 GCTTCCTCGTCGACATGAAGGAAGACAGCATCGAGGGCATCTACGACACTCTCAAGACTT 442297 Query 111826 GTGCCCAAATCTCAAAGTGGGCTGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCA 111885 | ||| || || || ||| || |||||||| || || |||| | | || | Sbjct 442296 GCGCCATGATTTCTAAAATGGCCGGCGGTATCGGCCTGAACGTCCACCGCATTCGTGCTA 442237 Query 111886 ACAAGTCTCGTATTAGAGGTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCG 111945 | || ||| || || || || || | || | |||| ||||| || | Sbjct 442236 CCGGATCCTACATTGCCGGCACCAACGGCACCTCGAACGGCGTCGTTCCCATGCTGCGAG 442177 Query 111946 TATTTAACGCCACAGCGCGCTATGTAAACCAAGCTGGGCGTC--GCAA--GGGATCTATC 112001 | || ||| ||| || | || || |||||| || | | || | ||| | || Sbjct 442176 TCTTCAACAACACTGCCAGATACGTCGACCAAGGCGG-CAACAAGCGACCGGGCGCCTTC 442118 Query 112002 GCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAAC 112061 || |||| || ||||| |||||||| ||| || | || |||||||| | | ||| Sbjct 442117 GCCATCTACCTGGAGCCCTGGCACGCCGATGTCTTTGAATTCCTTGATCTCAGAAAGAAC 442058 Query 112062 CAAGGTGATGAGGAGG--CGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATC 112119 || || | ||||| | |||| | ||||| |||||| || || ||||| || || | Sbjct 442057 CACGGCAAGGAGGAAGTCCGCGCT--CGCGACCTCTTCCTTGCGCTGTGGATCCCCGACC 442000 Query 112120 TCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGAC-AAGGCA 112178 ||||||||||| | || ||| ||| |||| | ||| | ||| | || || || || || Sbjct 441999 TCTTCATGAAGCGTGTCGAGAAGAATGGCGACTGGACCCTCATGTGCCCCAACGAATGC- 441941 Query 112179 CCCGGTCTCTCCGATGCCGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAA 112238 || || ||| |||| | || || |||||||| || | || |||||||||| Sbjct 441940 CCTGGGCTCGCCGACTGCTACGGCGACGAGTTTGAGGCTTTGTATGAAAAGTACGAGCGC 441881 Query 112239 GAAAGTCG-GGCGACTGCGACGGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGT 112296 ||| | || ||| | ||| | | || | || | ||||| | | || ||| || Sbjct 441880 GAAGGCCGTGGCCGC-AAGACAATCCGCGC-CCAGAAGCTGTGGTACTCGATCCTCGAGG 441823 Query 112297 CTCAAACCGAGACTGGTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTA 112356 |||| ||||||||||| | || | |||||| ||||| || || ||| ||||| | Sbjct 441822 CTCAGACCGAGACTGGCAACCCCTTTATGCTGTACAAGGATCATTGCAACAGGAAGAGCA 441763 Query 112357 ATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTA 112416 | || ||||| ||||| || || ||||||||||| || || || | || | Sbjct 441762 ACCAGAAGAACTTGGGAACCATTCGCAGCTCCAACCTCTGCACCGAGATTATCGAGTACT 441703 Query 112417 CAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGG 112476 | | | || ||| || || || ||||| || || | || || ||| | ||||| Sbjct 441702 CGGCCCCCGACGAGGTTGCCGTCTGCAACCTTGCCTCCCTTGCCCTGCCCGCCTTTGTGG 441643 Query 112477 ATCCAGAGACAAAGACA--TTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCAC 112534 | | ||| ||| || | || | |||| || ||||| || || || Sbjct 441642 A--CTACGACCAAGGCAAGTACGACTTCCAAAAGCTGCACGACGTCACCCGCGTGGTTGT 441585 Query 112535 AAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATC 112594 ||| || |||| | || || || |||||||| | || || || Sbjct 441584 CCGAAATCTCAACAAGATCATCGACGTCAACCACTACCCCGTCCAAGAAGCACGCAACAG 441525 Query 112595 TAATATGAGACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCT 112654 || ||| | || ||||| |||||| ||||||| ||||| | || || | ||| || Sbjct 441524 CAACATGCGGCATCGTCCCATTGGTGTCGGTGTTCAAGGCTTGGCCGACGCCTTCCTTGC 441465 Query 112655 TTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGAC 112714 |||| | ||||| || ||| || || | || || || |||||||| Sbjct 441464 GCTTCGCATGCCCTTTGAGTCTCCCGAGGCTCGCGAGCTGAACAAGCAGATTTTTGAGAC 441405 Query 112715 AATGTATCACGCCGCTCTTGA-GGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATG 112773 || || |||||||| ||||| |||| |||| |||| ||| || ||||| || Sbjct 441404 CATCTACCACGCCGC-CTTGACGGCGTCGGTGGAGCTGGCCAAGGAGGAGGGTCCCTACT 441346 Query 112774 AAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTG 112833 || || |||| ||||| || || |||| | || || ||||| |||| |||| ||| Sbjct 441345 CCACGTTCAAGGGATCTCCGGCCTCTGAAGGCATCCTGCAGTTTGACATGT-GGAACGTG 441287 Query 112834 A----GACCAAGCTTCACTACGACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGT 112889 | | || | ||| | || ||||| | |||||||| | ||||||||| | || Sbjct 441286 ACGCCGTCCGA-CTT--GTGGGAGTGGGATTCCCTCAAGGAGCAGATCAAGGAGCACGGG 441230 Query 112890 CTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGT 112949 |||| ||| || || | || || ||||| || || ||||| | || || |||| Sbjct 441229 ATTCGCAACTCGCTGCTGCTCGCGCCCATGCCCACGGCGTCCACGTCGCAGATTCTGGGC 441170 Query 112950 AATAATGAATGCTTTGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGA 113009 || || || ||||| || ||||||||| | ||||| || | | || | ||| ||||| Sbjct 441169 AACAACGAGTGCTTCGAGCCCTACACGTCCAACATTTACCAGCGACGCGTCCTGGCGGGC 441110 Query 113010 GAGTTTGTGATTGTCAAC---AAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGG 113066 ||||| | | |||||| || |||| |||| ||| || || ||||| ||| Sbjct 441109 GAGTTCCAGGTCGTCAACCCATGGCTTCTCAAGGAT---CTCGTCGACATGGGTCTGTGG 441053 Query 113067 TCCAAGGATATGAAGGATCTCAT 113089 || | | |||||| ||| ||| Sbjct 441052 TCAGACGCCATGAAGAATCGCAT 441030 >seq36 Length=363581 Score = 93.3 bits (102), Expect = 5e-14 Identities = 160/228 (70%), Gaps = 6/228 (3%) Strand=Plus/Plus Query 16064 GGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAG 16123 ||| || || || || ||||||| ||||||||| ||||| ||| | | |||| || Sbjct 175965 GGCGTCGATTTCGTCGATGAAGATGATGCATGGAGCATTTTTGCGGCCCTCGGCAAACAG 176024 Query 16124 ATCCCGTACACGCTTGGCG--CCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA- 16180 || | || | ||| || || ||||| |||||||| ||||| || | || || Sbjct 176025 GTCTCTGACTC--TTGACGGACCAACACCGACAAACATTTCCACGAATTCTGATCCGCTC 176082 Query 16181 ACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 16240 || || | ||| || || || || || ||| ||||| |||||||| ||||| || Sbjct 176083 ACGCTGAA-GAACGGTACGCCGGACTCGCCAGCAGTGGCTTTTGCGAGAAGCGTCTTTCC 176141 Query 16241 CGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 16288 |||||||| ||| ||||||| ||| || || || ||||||||||| Sbjct 176142 AGTACCTGGAGGACCAGCGAGGATGGCGCCGCGGGGTATCTTGGCGCC 176189 >seq1 Length=2302571 Score = 93.3 bits (102), Expect = 5e-14 Identities = 100/130 (77%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 102203 TGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAG 102261 ||| ||||| ||||||||| |||| | ||| ||| | || | ||||||||||||||| | Sbjct 1624834 TGTCGAGGGCATCTTCTTCAGTGGTGCATTC-GCGTCCATCTTTTGGCTCAAGAAGCGCG 1624892 Query 102262 GTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACC 102321 | |||||||| || || |||||| ||||| || || || ||||||||||| | ||| Sbjct 1624893 GCCTCATGCCCGGGCTTACCTTCTCAAACGAACTCATATCCCGTGACGAGGGTTTGCACA 1624952 Query 102322 AAGAGTTTGC 102331 || ||||| Sbjct 1624953 CCGACTTTGC 1624962 Score = 84.2 bits (92), Expect = 3e-11 Identities = 92/122 (75%), Gaps = 3/122 (2%) Strand=Plus/Plus Query 101817 TGGACTGCTGAAGAGGTAGATCTCTCAAAGGATTTGGACGATTGGAAGACTC---TAAAT 101873 ||||| || |||||| |||| || || ||||||||| |||| ||||| | || | || Sbjct 1624379 TGGACAGCCGAAGAGATAGACCTGTCCAAGGATTTGCACGACTGGAATAATCGCCTGAAC 1624438 Query 101874 GAAAATGAAAAGAAATTCATAAAATACATCCTGGCATTCTTTGCTGGGTCCGATGGAATT 101933 || |||||||| | ||||| ||||| ||||||||||||||| || ||||| || Sbjct 1624439 GACGATGAAAAGTATTTCATTTCTCACATCTTGGCATTCTTTGCTGCCTCGGATGGCATC 1624498 Query 101934 GT 101935 || Sbjct 1624499 GT 1624500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620738916083280