Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09] 449 sequences; 39,397,682 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq2 217 2e-51 >seq2 Length=1075658 Score = 217 bits (240), Expect = 2e-51 Identities = 1056/1652 (64%), Gaps = 51/1652 (3%) Strand=Plus/Plus Query 109414 TAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAGAGTTTG 109473 || ||||| || || |||||||| |||||| || | ||||| || | || ||| Sbjct 440793 TAGTACATGCCAGTCTTGAGACCCAGCTTCCACCCGGCAAAGTGCATCGACGTGATCTTG 440852 Query 109474 GAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATCGATGAATCGACCA 109533 | || || || ||| | ||| | ||||| ||||| ||||| || ||| Sbjct 440853 CCCATGGTTGGGTCCTTCATGTGAATGTTGAGAGACTGGGACTGGTCGATAAAGGCACCG 440912 Query 109534 CGATCAGCCGCCATGTCGATGATACACTTTTGGCT----AATTTCCCAGACAGTCTTGTA 109589 || || || ||||| | | ||| | ||| |||||||||||| |||||||| Sbjct 440913 CGGTCGGCGGCCATCTGCAC----CACATGACGCTGCGAAATTTCCCAGACCGTCTTGTA 440968 Query 109590 CAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCACCAGCCTTCAC 109649 || | ||| | || ||||||||| |||||| || || ||||| | | Sbjct 440969 CAGAGCCTTTACCTCGCCGGGAATGTTGGGGATGTTCTGGATCGAGCCGTTCTCGGCAAT 441028 Query 109650 CATGAGATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCGTCAACAAG--A 109707 ||| ||| |||||| | | ||||| ||||| | | |||||| | | ||| | Sbjct 441029 GATGCGATTCTTCATGGCGTCTGACCACAGACCCATGTCGACGAGATCCTTGAGAAGCCA 441088 Query 109708 TGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTG 109767 || |||||| || || || || || || |||||| |||| ||||| | |||| Sbjct 441089 TGG--GTTGACGACCTGGAACTCGCCCGCCAGGACGCGTCGCTGGTAAATGTTGGACGTG 441146 Query 109768 TAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGA 109827 ||||| ||||| ||||| |||||||| || || || | ||||| || ||||||||||| Sbjct 441147 TAGGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGCGACGTGGACGCCGTGGGCATGGGC 441206 Query 109828 GCCATGAGAAGACTGTTTCGGAGACCCTTCGTCTTTACCCGCTCACGCATTGCGTCCCAA 109887 || | || || ||| || | || | | ||| | | |||| | | ||||| Sbjct 441207 GCGAGCAGCAGCGAGTTGCGAATCCCGTGCTCCTTGATCTGCTCCTTGAGGGAATCCCAC 441266 Query 109888 TCATAACGACCACTAAATTTAGTC----TCACCATCCCACATATCTGGTTGAAGTACACC 109943 || |||| || | | | |||| ||| |||| || || || | || Sbjct 441267 TC-------CCAC--AAGTCGGACGGCGTCACGTTCC-ACATGTCAAACTGCAGGATGCC 441316 Query 109944 CTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCTCGGCCAACTCGGA 110003 |||| || ||||| |||||||| | ||| | ||||| ||| ||||| ||| Sbjct 441317 TTCAGAGGCCGGAGATCCCTTGAACGTGGAGTAGGGACCCTCCTCCTTGGCCAGCTCCAC 441376 Query 110004 TGAAGCC-TCTAGTGCCGCATGATACATAGTCTCAAAAATATGAGCATTCATGAGGCGAG 110062 || ||| || || || || || || || ||||||||||| || |||| ||||| Sbjct 441377 CGACGCCGTCAAG-GCGGCGTGGTAGATGGTCTCAAAAATCTGCTTGTTCAGCTCGCGAG 441435 Query 110063 ACTCTTCACAGTCGAAGGGAAGACCACAAAGAATAAACACATCCGCTAGACCCTGAACAC 110122 ||| | | || ||||| | | | || || | || || | || ||||||| Sbjct 441436 CCTCGGGAGACTCAAAGGGCATGCGAAGCGCAAGGAAGGCGTCGGCCAAGCCTTGAACAC 441495 Query 110123 CGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTCTACGGGGTAAAAGT 110182 ||| ||||||||| |||||| |||||| | || || || |||||||| || Sbjct 441496 CGACACCAATGGGACGATGCCGCATGTTGCTGTTGCGTGCTTCTTGGACGGGGTAGTGGT 441555 Query 110183 TGCGGTCGATGACCCGATTGAGATTCTTCGTCA--CAGTCTTCGTGATTTCATGGAGTTT 110240 || |||||||| | |||||||| | | || || | |||| || || || || Sbjct 441556 TGACGTCGATGATCTTGTTGAGATT-TCGGACAACCACGCGG-GTGACGTCGTGCAGCTT 441613 Query 110241 GTCGTAATCGAACGTTTTCGTCTCCTTATTG-ACATATTTGGGGAGAGCAATAGACGCAA 110299 | | | ||| || || | | | || | ||| | ||| || |||| || |||| Sbjct 441614 TTGGAAGTCGTAC-TTGCCTTGGTCGTAGTCCACAAAGGCGGGCAGGGCAAGGGAGGCAA 441672 Query 110300 GATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTTCCGTACACAAGTTGG 110359 | ||||| || | | |||||| | | | ||| || | ||| || || || | ||||| Sbjct 441673 GGTTGCAGACGGCAACCTCGTCGGGGGCCGAGTACTCGATAATCTCGGTGCAGAGGTTGG 441732 Query 110360 AACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCATCCTTATAGA 110419 | || |||| |||||||||||||| || || |||||| |||||| || | Sbjct 441733 AGCTGCGAATGGTTCCCAAGTTCTTCTGGTTGCTCTTCCTGTTGCAATGATCCTTGTACA 441792 Query 110420 GCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATA-CATCGGCG 110478 |||| | ||| | ||||| || ||||| | || ||| || | | ||| | | || | | Sbjct 441793 GCATAAAGGGGTTGCCAGTCTCGGTCTGAGCCTCGAGGATCGAGTACCACAGCTTCTG-G 441851 Query 110479 GCGGGGACAG--TTGCGTTAGCGA-GACCTTCCTCCTCGTACTTGGTGTACAAGTCCTCA 110535 ||| ||| | ||||| || | | ||||| ||||||||| ||||| ||||| Sbjct 441852 GCGCGGATTGTCTTGCG---GCCACGGCCTTCGCGCTCGTACTTTTCATACAAAGCCTCA 441908 Query 110536 AATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTT-GTCGGGACAGAAGAGGGACCA 110594 || || | ||||| || | || ||| || || || ||| || | ||||| ||| Sbjct 441909 AACTCGTCGCCGTAGCAGTCGGCGAG-CCCAGGGCATTCGTTGGGGCACATGAGGGTCCA 441967 Query 110595 ATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGAAAAG 110654 | ||| || ||| || | ||||||||| ||||| || ||||||| ||| ||| || Sbjct 441968 GTCGCCATTCTTCTCGACACGCTTCATGAAGAGGTCGGGGATCCACAGCGCAAGGAAGAG 442027 Query 110655 GTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGAT 110714 ||| || || | || || | || ||||| | || || | || || | || Sbjct 442028 GTCGCGAGCGCGGACTTCCTCCTTGCCGTGGTTCTTTCTGAGATCAAGGAATTCAAAGAC 442087 Query 110715 ATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCC--TTACGACGACCCGCC-TG 110771 ||| | |||||| || || || |||| |||| || ||| | | ||||| || Sbjct 442088 ATCGGCGTGCCAGGGCTCCAGGTAGATGGCGAAGGCGCCCGGTCGCTTGTTGCCGCCTTG 442147 Query 110772 GTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTG 110831 || || || | || ||| |||||||| | ||||| |||| | || | || Sbjct 442148 GTCGACGTATCTGGCAGTGTTGTTGAAGACTCGCAGCATGGGAACGACGCCGTTCGAGGT 442207 Query 110832 ACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGATATGCATACCAAT 110891 || || || || ||| ||| | ||||||||| ||||| | || || || Sbjct 442208 GCCGTTGGTGCCGGCAATGTAGGATCCGGTAGCACGAATGCGGTGGACGTTCAGGCCGAT 442267 Query 110892 ACCACCCGCCCACTTACTAAT--TTGTGCACACTCTGTGAGTGTACCATAAATACCATCA 110949 ||| || ||| ||| ||| | | ||| | ||| |||| || | || || || || Sbjct 442268 ACCGCCGGCCATTTTAGAAATCATGGCGCA-AGTCT-TGAGAGTGTCGTAGATGCCCTCG 442325 Query 110950 ATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCC 111009 || ||| |||| || | | || ||||| || || | |||| ||||||| ||| Sbjct 442326 ATGCTGTCTTCCTTCATGTCGACGAGGAAGCACGAGGAAAGCTGACACTGAGGCGTGCCC 442385 Query 111010 GCATTGAAGAGTGTAGGTGTCGCATGAATGAA 111041 || |||||||| ||||||| || || |||| Sbjct 442386 GCGTTGAAGAGGGTAGGTGAGGCGTGGGTGAA 442417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588972694372200