Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09]
449 sequences; 39,397,682 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq67 109 4e-19
seq56 109 4e-19
seq13 93.3 3e-14
>seq67
Length=171618
Score = 109 bits (120), Expect = 4e-19
Identities = 155/216 (72%), Gaps = 8/216 (4%)
Strand=Plus/Plus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||||||| | ||||| || ||||| ||||| ||||| | ||| | || |||| ||
Sbjct 155705 ACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCATCCTCG 155764
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
||||| || || ||||| || ||||| |||||||| | || | |||||||||||
Sbjct 155765 AGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGG 155824
Query 34893 ATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGT 34948
||||| ||||| || | ||||| || | ||| || |||| ||| |||||
Sbjct 155825 ATCTTGGACTTGAC--AT--TGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGT 155880
Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984
|| |||||||| ||||| || || |||||||| ||
Sbjct 155881 CTTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTT 155916
>seq56
Length=194926
Score = 109 bits (120), Expect = 4e-19
Identities = 154/214 (72%), Gaps = 8/214 (4%)
Strand=Plus/Minus
Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831
||||| |||| ||| ||| ||||| ||||| ||||| | ||| | || |||| ||
Sbjct 69379 AACCAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCATCTTC 69320
Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891
|||||||| || ||||| || | || |||||||| |||| | |||||||||||
Sbjct 69319 GAGCTGTTTACCAGCAAAGATCAAGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCTTG 69260
Query 34892 AATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGG 34947
||| ||| ||||| || | ||||| ||| | ||| || |||| ||| ||||
Sbjct 69259 AATTTTCGACTTGAC--AT--TGTCGATGGTGTCAGAAGACTCCACCTCGAGGGTGATGG 69204
Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
| ||||| ||||| ||||| || ||||| |||||
Sbjct 69203 TCTTTCCGGTGAGGGTCTTTACGAAGATTTGCAT 69170
Score = 107 bits (118), Expect = 1e-18
Identities = 149/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||| ||| | ||| || ||||| ||||| ||||| | | ||||| | || ||
Sbjct 69834 ACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAATGTTCGTCCGTCCTCG 69775
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
||||| || |||||||| || ||||| |||||||| | || | ||| |||||||| |
Sbjct 69774 AGCTGCTTGCCGGCAAAGATAAGTCGCTGCTGGTCGGGGGGAATCCCTTCCTTGTCTTGA 69715
Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952
|||||| |||||| | || | || | |||||| || | || || ||||||
Sbjct 69714 ATCTTCGACTTGACGTTGTCAATGGTGTCTGACGACTCAACTTCCAGCGTGATTGTTTTT 69655
Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
||||| || ||||| |||||||| |||||
Sbjct 69654 CCCGTCAGTGTCTTGACAAAGATTTGCAT 69626
Score = 87.8 bits (96), Expect = 1e-12
Identities = 139/197 (71%), Gaps = 8/197 (4%)
Strand=Plus/Minus
Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849
||| ||||| ||||| ||||| | ||| | || | || || || ||||| || |||||
Sbjct 69589 TTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCTTCGAGTTGTTTGCCAGCAAA 69530
Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909
|| | ||||||||||| |||| | ||||||||||| || ||| ||||| |
Sbjct 69529 GATCAAGCGTTGCTGGTCGGGCGGGATGCCCTCCTTGTCTTGGATTTTCGCCTTGAC--A 69472
Query 34910 TGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCT 34965
| | ||||| || | ||| || || | ||| ||||| || || ||||| ||||
Sbjct 69471 T--TGTCGATGGTGTCGGAAGACTCCACCTCCAGGGTGATGGTCTTCCCAGTGAGGGTCT 69414
Query 34966 TCACAAAGATCTGCATA 34982
| || ||||||||||||
Sbjct 69413 TGACGAAGATCTGCATA 69397
>seq13
Length=702126
Score = 93.3 bits (102), Expect = 3e-14
Identities = 128/179 (72%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 34794 TTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATT 34853
||||||||||| ||||| | ||| |||| |||| |||||||| || || ||||| ||
Sbjct 289255 TTCTGAATGTTGTAGTCGGCCAGGGTTCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATC 289196
Query 34854 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT 34913
| || |||||||| | || | ||||||||||| ||||| ||||| |
Sbjct 289195 AAACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 289136
Query 34914 ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAA 34972
|||| || || ||| || |||| || ||||| || ||||| || |||||||||||
Sbjct 289135 ATCGTGTCGGAGGACTCGACCTCGAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAA 289077
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 324631823544072
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