Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09]
449 sequences; 39,397,682 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq1 107 2e-18
>seq1
Length=2302571
Score = 107 bits (118), Expect = 2e-18
Identities = 192/279 (69%), Gaps = 5/279 (2%)
Strand=Plus/Minus
Query 19240 TCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAA 19299
|| ||||||||| ||| | || ||||| ||||| || || ||||| || |||||
Sbjct 1624620 TCGATCAATAAAGAATACGTCTCGGAATGGATATTCTCCATCATGATCTGGAACCCGTAG 1624561
Query 19300 AAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTA 19359
||||| | ||||| | | ||| || || | | || | || |||| ||||| ||
Sbjct 1624560 AAACAACGGGCTTCAGGAACCTGCACCTCGCCGCTGAACCGCTCAACCAGGTTTTCGTTG 1624501
Query 19360 ACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCT 19419
|| || ||||| || ||||| ||||| || | || ||| |||| ||||||||
Sbjct 1624500 ACGATGCCATCCGAGGCAGCAAAGAATGCCAAGATGTGAGAAATGAAATACTTTTCATC- 1624442
Query 19420 GAGGTTAATG----TATTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGT 19475
| ||| | | ||||||| || | | ||| || || | |||| ||||| ||||
Sbjct 1624441 GTCGTTCAGGCGATTATTCCAGTCGTGCAAATCCTTGGACAGGTCTATCTCTTCGGCTGT 1624382
Query 19476 CCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATAT 19514
||| ||||||||||| || || || ||||| | ||||||
Sbjct 1624381 CCAGAAAGAAGCCTCAGCCTTCTTGTACATTTGCCATAT 1624343
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562105645164360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |