Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09] 449 sequences; 39,397,682 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq1 107 2e-18 >seq1 Length=2302571 Score = 107 bits (118), Expect = 2e-18 Identities = 192/279 (69%), Gaps = 5/279 (2%) Strand=Plus/Minus Query 19240 TCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAA 19299 || ||||||||| ||| | || ||||| ||||| || || ||||| || ||||| Sbjct 1624620 TCGATCAATAAAGAATACGTCTCGGAATGGATATTCTCCATCATGATCTGGAACCCGTAG 1624561 Query 19300 AAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTA 19359 ||||| | ||||| | | ||| || || | | || | || |||| ||||| || Sbjct 1624560 AAACAACGGGCTTCAGGAACCTGCACCTCGCCGCTGAACCGCTCAACCAGGTTTTCGTTG 1624501 Query 19360 ACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCT 19419 || || ||||| || ||||| ||||| || | || ||| |||| |||||||| Sbjct 1624500 ACGATGCCATCCGAGGCAGCAAAGAATGCCAAGATGTGAGAAATGAAATACTTTTCATC- 1624442 Query 19420 GAGGTTAATG----TATTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGT 19475 | ||| | | ||||||| || | | ||| || || | |||| ||||| |||| Sbjct 1624441 GTCGTTCAGGCGATTATTCCAGTCGTGCAAATCCTTGGACAGGTCTATCTCTTCGGCTGT 1624382 Query 19476 CCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATAT 19514 ||| ||||||||||| || || || ||||| | |||||| Sbjct 1624381 CCAGAAAGAAGCCTCAGCCTTCTTGTACATTTGCCATAT 1624343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562105645164360