Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09]
449 sequences; 39,397,682 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq56 104 2e-16
seq2 100 2e-15
>seq56
Length=194926
Score = 104 bits (114), Expect = 2e-16
Identities = 135/184 (73%), Gaps = 2/184 (1%)
Strand=Plus/Minus
Query 563292 AATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCT 563351
||| ||||| || ||||| ||||| ||| ||||| || || || ||||| || ||||
Sbjct 70036 AATGTTGTAGTCGGCTAGGGTTCTCCCATCCTCAAGCTGCTTACCAGCAAAGATGAGTCG 69977
Query 563352 TTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGT 563411
||||||||||||||||| || || || ||||||||||| || || ||||| ||
Sbjct 69976 CTGCTGATCAGGAGGAATGCCCTCCTTGTCTTGAATTTTCGACTTCACATTATCAATGGT 69917
Query 563412 ATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTT 563470
||||| || | || ||||| || | || || || || || || || |||||||| |
Sbjct 69916 ATCAG-ACGACTCCACCTCGAGCGTGATGGTCTTCCCGGTCAGCGTCTTGACGAAAATCT 69858
Query 563471 GCAT 563474
||||
Sbjct 69857 GCAT 69854
>seq2
Length=1075658
Score = 100 bits (110), Expect = 2e-15
Identities = 99/128 (77%), Gaps = 0/128 (0%)
Strand=Plus/Minus
Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468
||||| || || || || |||||||| || ||||| ||||| ||||| || || | |||
Sbjct 167046 ACTGTCCCTGCCTACTTCAATGACTCTCAGCGTCAGGCTACCAAAGACGCCGGTCTCATT 166987
Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGA 550528
|| || || || || || ||||||||||| || ||||||||||| || |||| |||||
Sbjct 166986 GCCGGTCTCAACGTGCTCCGTATTATCAACGAGCCTACTGCTGCCGCCATTGCCTATGGT 166927
Query 550529 CTTGATAA 550536
|| || ||
Sbjct 166926 CTCGACAA 166919
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4029272254855010
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |