Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09] 449 sequences; 39,397,682 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq56 104 2e-16 seq2 100 2e-15 >seq56 Length=194926 Score = 104 bits (114), Expect = 2e-16 Identities = 135/184 (73%), Gaps = 2/184 (1%) Strand=Plus/Minus Query 563292 AATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCT 563351 ||| ||||| || ||||| ||||| ||| ||||| || || || ||||| || |||| Sbjct 70036 AATGTTGTAGTCGGCTAGGGTTCTCCCATCCTCAAGCTGCTTACCAGCAAAGATGAGTCG 69977 Query 563352 TTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGT 563411 ||||||||||||||||| || || || ||||||||||| || || ||||| || Sbjct 69976 CTGCTGATCAGGAGGAATGCCCTCCTTGTCTTGAATTTTCGACTTCACATTATCAATGGT 69917 Query 563412 ATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTT 563470 ||||| || | || ||||| || | || || || || || || || |||||||| | Sbjct 69916 ATCAG-ACGACTCCACCTCGAGCGTGATGGTCTTCCCGGTCAGCGTCTTGACGAAAATCT 69858 Query 563471 GCAT 563474 |||| Sbjct 69857 GCAT 69854 >seq2 Length=1075658 Score = 100 bits (110), Expect = 2e-15 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468 ||||| || || || || |||||||| || ||||| ||||| ||||| || || | ||| Sbjct 167046 ACTGTCCCTGCCTACTTCAATGACTCTCAGCGTCAGGCTACCAAAGACGCCGGTCTCATT 166987 Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGA 550528 || || || || || || ||||||||||| || ||||||||||| || |||| ||||| Sbjct 166986 GCCGGTCTCAACGTGCTCCGTATTATCAACGAGCCTACTGCTGCCGCCATTGCCTATGGT 166927 Query 550529 CTTGATAA 550536 || || || Sbjct 166926 CTCGACAA 166919 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029272254855010