Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09]
449 sequences; 39,397,682 total letters
Query= NC_017940.1
Length=127732
Score E
Sequences producing significant alignments: (Bits) Value
seq23 159 3e-34
seq48 100 2e-16
>seq23
Length=560556
Score = 159 bits (176), Expect = 3e-34
Identities = 265/378 (70%), Gaps = 6/378 (2%)
Strand=Plus/Minus
Query 30009 GTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGAT 30068
|||||| || || || ||||||||| || ||| | |||||| |||| || ||||||
Sbjct 480162 GTGGCAAGGCGGCAGCGCCATGAGGTGCAGGTCCCGCGCGTTCCACGCGCTCATGATGAT 480103
Query 30069 GCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCC 30128
| | ||| | || || || ||| ||| | | ||| ||||| || |||||
Sbjct 480102 CCTGCGGTCGTACGGCCTGGTCTTGAGCTTGTCGATGACGTCGGCGAGCTGGTCGACCCC 480043
Query 30129 CATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAA 30188
| | |||| |||||| | | | |||| ||||||||| || || |||| |||||||||
Sbjct 480042 CTTGCCCGTGTAGTCCGTCTTGGCGTCCACGTACTCTGCGCCAAAGTGCCGCCACTGGAA 479983
Query 30189 CCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAA 30248
||||| || || || ||||| ||||| || | |||| | |||| |||| | ||
Sbjct 479982 GCCGTAGACGGGGCCGAGGTCGCCCTCCTCGCGGTGCGTCAGGCCCAGGCTGTCGAGGAA 479923
Query 30249 GTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCC--CTTCTCGGAGAGCTCTTTGGAG 30306
|| | || |||||| ||||||| ||||| || || | || | |||||| | ||||
Sbjct 479922 CTCGCGCGACCCGTTGCCGTCCCATATCTTGACGCCGACGTCGCTGAGAGCCCG--GGAG 479865
Query 30307 TTTGTGGA-CCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCT 30365
| ||| ||||| || ||||||||||||||| | |||||||| | ||| ||||
Sbjct 479864 TCGGTGTTGCCCTC-GATGAACCACAGCAGCTCGGCGACGACGGCGCGCAGAAACACCCG 479806
Query 30366 CTTGGTCGTGAGGAGGGG 30383
||| || |||||||| ||
Sbjct 479805 CTTCGTGGTGAGGAGCGG 479788
>seq48
Length=244570
Score = 100 bits (110), Expect = 2e-16
Identities = 135/181 (75%), Gaps = 8/181 (4%)
Strand=Plus/Minus
Query 52016 CGTCAAGGTGAGGCTGAGGACCCCCAGGCACCCAGAGATGGGCGACAAGTTTGCGTCGT- 52074
||||||||| || | |||| ||| | ||| |||| |||||||||||||||||
Sbjct 120410 CGTCAAGGTCCGGGTTCGGACAACCAAGATCCCGCAGATTGGCGACAAGTTTGCGTCTCG 120351
Query 52075 TCACGGCGCAAAAGGGGACG--TGCGGAGCCGTCCTGACCCAGGAGGACATGCCCTTCGA 52132
|||||| |||||||| ||| || | | ||| | | | |||||||||||||||| |
Sbjct 120350 TCACGGA-CAAAAGGGCACGATTGGTGTGACGTACCGGC--AGGAGGACATGCCCTTT-A 120295
Query 52133 CAAGG-ACGGGGTGGTGCCCGACCTCATCATCAACCCCCACGCCTTTCCATCCAGGATGA 52191
|| || | ||||| ||| ||| ||||||||||||| |||||| |||| || | ||||
Sbjct 120294 CACGGGAAGGGGTCACGCCAGACATCATCATCAACCCGCACGCCATTCCGTCGCGAATGA 120235
Query 52192 C 52192
|
Sbjct 120234 C 120234
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 408615363967877
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |