Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09] 449 sequences; 39,397,682 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq23 159 3e-34 seq48 100 2e-16 >seq23 Length=560556 Score = 159 bits (176), Expect = 3e-34 Identities = 265/378 (70%), Gaps = 6/378 (2%) Strand=Plus/Minus Query 30009 GTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGAT 30068 |||||| || || || ||||||||| || ||| | |||||| |||| || |||||| Sbjct 480162 GTGGCAAGGCGGCAGCGCCATGAGGTGCAGGTCCCGCGCGTTCCACGCGCTCATGATGAT 480103 Query 30069 GCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCC 30128 | | ||| | || || || ||| ||| | | ||| ||||| || ||||| Sbjct 480102 CCTGCGGTCGTACGGCCTGGTCTTGAGCTTGTCGATGACGTCGGCGAGCTGGTCGACCCC 480043 Query 30129 CATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAA 30188 | | |||| |||||| | | | |||| ||||||||| || || |||| ||||||||| Sbjct 480042 CTTGCCCGTGTAGTCCGTCTTGGCGTCCACGTACTCTGCGCCAAAGTGCCGCCACTGGAA 479983 Query 30189 CCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAA 30248 ||||| || || || ||||| ||||| || | |||| | |||| |||| | || Sbjct 479982 GCCGTAGACGGGGCCGAGGTCGCCCTCCTCGCGGTGCGTCAGGCCCAGGCTGTCGAGGAA 479923 Query 30249 GTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCC--CTTCTCGGAGAGCTCTTTGGAG 30306 || | || |||||| ||||||| ||||| || || | || | |||||| | |||| Sbjct 479922 CTCGCGCGACCCGTTGCCGTCCCATATCTTGACGCCGACGTCGCTGAGAGCCCG--GGAG 479865 Query 30307 TTTGTGGA-CCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCT 30365 | ||| ||||| || ||||||||||||||| | |||||||| | ||| |||| Sbjct 479864 TCGGTGTTGCCCTC-GATGAACCACAGCAGCTCGGCGACGACGGCGCGCAGAAACACCCG 479806 Query 30366 CTTGGTCGTGAGGAGGGG 30383 ||| || |||||||| || Sbjct 479805 CTTCGTGGTGAGGAGCGG 479788 >seq48 Length=244570 Score = 100 bits (110), Expect = 2e-16 Identities = 135/181 (75%), Gaps = 8/181 (4%) Strand=Plus/Minus Query 52016 CGTCAAGGTGAGGCTGAGGACCCCCAGGCACCCAGAGATGGGCGACAAGTTTGCGTCGT- 52074 ||||||||| || | |||| ||| | ||| |||| ||||||||||||||||| Sbjct 120410 CGTCAAGGTCCGGGTTCGGACAACCAAGATCCCGCAGATTGGCGACAAGTTTGCGTCTCG 120351 Query 52075 TCACGGCGCAAAAGGGGACG--TGCGGAGCCGTCCTGACCCAGGAGGACATGCCCTTCGA 52132 |||||| |||||||| ||| || | | ||| | | | |||||||||||||||| | Sbjct 120350 TCACGGA-CAAAAGGGCACGATTGGTGTGACGTACCGGC--AGGAGGACATGCCCTTT-A 120295 Query 52133 CAAGG-ACGGGGTGGTGCCCGACCTCATCATCAACCCCCACGCCTTTCCATCCAGGATGA 52191 || || | ||||| ||| ||| ||||||||||||| |||||| |||| || | |||| Sbjct 120294 CACGGGAAGGGGTCACGCCAGACATCATCATCAACCCGCACGCCATTCCGTCGCGAATGA 120235 Query 52192 C 52192 | Sbjct 120234 C 120234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408615363967877