Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09] 449 sequences; 39,397,682 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq56 138 9e-28 seq13 89.7 4e-13 >seq56 Length=194926 Score = 138 bits (152), Expect = 9e-28 Identities = 159/214 (74%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 101260 AACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTC 101319 ||| | ||||||||| ||||| || || || ||||| ||||| | || | | |||| || Sbjct 69379 AACCAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCATCTTC 69320 Query 101320 CAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTG 101379 | || ||||| ||||| ||||| ||||| || |||||||| ||||| || || ||||| Sbjct 69319 GAGCTGTTTACCAGCAAAGATCAAGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCTTG 69260 Query 101380 AATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTT 101439 |||||| || ||| | || | |||||||| | ||||| || || |||| || || Sbjct 69259 AATTTTCGACTTGACATTGTCGATGGTGTCAGAAGACTCCACCTCGAGGGTGATGGTCTT 69200 Query 101440 GCCGGTTAAAGTTTTTACAAATATCTGCATGGTT 101473 ||||| | || ||||| || || ||||||||| Sbjct 69199 TCCGGTGAGGGTCTTTACGAAGATTTGCATGGTT 69166 Score = 118 bits (130), Expect = 8e-22 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 101273 GTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCT 101332 || || || ||||| || ||||| ||||| | ||||| |||| || | |||||||| Sbjct 70050 GTCGACTCCTTTTGAATGTTGTAGTCGGCTAGGGTTCTCCCATCCTCAAGCTGCTTACCA 69991 Query 101333 GCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTT 101392 ||||| || | ||||| ||||| || |||||||| || || ||||||||||| || Sbjct 69990 GCAAAGATGAGTCGCTGCTGATCAGGAGGAATGCCCTCCTTGTCTTGAATTTTCGACTTC 69931 Query 101393 ACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTT 101452 ||| | || | || ||||||| ||||| || || |||| || || ||||| | || Sbjct 69930 ACATTATCAATGGTATCAGACGACTCCACCTCGAGCGTGATGGTCTTCCCGGTCAGCGTC 69871 Query 101453 TTTACAAATATCTGCATG 101470 || || || ||||||||| Sbjct 69870 TTGACGAAAATCTGCATG 69853 >seq13 Length=702126 Score = 89.7 bits (98), Expect = 4e-13 Identities = 127/179 (71%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 101282 TTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATC 101341 || || || ||||| ||||| | |||| | |||| |||| ||||| || ||||| ||| Sbjct 289255 TTCTGAATGTTGTAGTCGGCCAGGGTTCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATC 289196 Query 101342 AAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCT 101401 |||||||| || ||||| || ||||| || || || || || || || ||| | || Sbjct 289195 AAACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 289136 Query 101402 ACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAA 101460 | ||||| || | || || || || |||| || ||||| || | || || ||||| Sbjct 289135 ATCGTGTCGGAGGACTCGACCTCGAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAA 289077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396276231490293