Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09]
449 sequences; 39,397,682 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq2 374 2e-98
seq1 131 3e-25
>seq2
Length=1075658
Score = 374 bits (414), Expect = 2e-98
Identities = 927/1389 (67%), Gaps = 41/1389 (3%)
Strand=Plus/Plus
Query 212907 GGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAG 212966
|||||||| | |||||| || || | || || | | |||||||| ||| || ||||||
Sbjct 441090 GGGTTGACGACCTGGAACTCGCCCGCCAGGACGCGTCGCTGGTAAATGTTGGACGTGTAG 441149
Query 212967 GGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCC 213026
||||||| || ||||||||| ||||||||||| | ||| || ||||||||||| ||
Sbjct 441150 GGCTCGAAGCACTCGTTGTTGCCCAGAATCTGCGACGTGGACGCCGTGGGCATGGGCGCG 441209
Query 213027 ACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCC--GAAGCTCTGCCCAGT 213084
| ||| || ||| | | |||||||| ||| | | || || | | |||| |
Sbjct 441210 AGCAGCAGCGAGTTGCGAATCCCGTGCTCCTTGATCTG-CTCCTTGAGGGAAT-CCCACT 441267
Query 213085 CCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTT 213144
|||| | | ||| | | |||||||||||||||||||||||| ||||||||
Sbjct 441268 CCCACAAGTCGGACGG---------CGTCACGTTCCACATGTCAAACTGCAGGATGCCTT 441318
Query 213145 T-GCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAG 213203
| ||| | | |||| | | | ||||||||| || | |||||||||||||||
Sbjct 441319 CAGAGGCCGGAGAT-CCCTTGAACGTGGAGTAGGGACCCTCCTCCTTGGCCAGCTCCACC 441377
Query 213204 GACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCC 213263
|||||| || ||| |||| ||||||||| ||||| |||| | |||| |||| |||
Sbjct 441378 GACGCCGTCAAGGCGGCGTGGTAGATGGTCTCAAAAATCTGCTTGTTCAGCTCGCGAGCC 441437
Query 213264 TCTGGGGACGTGAAGGGCATCATCATGCGTT-GGAACACATCAGCCAGCCCCTGGACCCC 213322
|| || ||| |||||||| | ||| |||| | || |||| || || || ||
Sbjct 441438 TCGGGAGACTCAAAGGGCATGCGAA-GCGCAAGGAAGGCGTCGGCCAAGCCTTGAACACC 441496
Query 213323 GATGCCGATGGGTCTGTGTCTCAGGTTAGACTTG-GAGCACTCCTCCAAGGGGTAAAAGT 213381
|| || ||||| | || | || ||| ||| | || || | | |||||| ||
Sbjct 441497 GACACCAATGGGACGATGCCGCATGTTGCTGTTGCGTGCT-TCTTGGACGGGGTAGTGGT 441555
Query 213382 TGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACT 213441
|| |||||||||||||||||| || ||| |||| |||||| | | ||| ||
Sbjct 441556 TGACGTCGATGATCTTGTTGAGATTTCGGACAACCACGCGGGTGACGTCGTGCAG---CT 441612
Query 213442 CGTGATTGAACACGTA---GCCCCCGTCCTG---CACAAACTCAGGCAGGGCGATGCTGG 213495
|| ||| |||| ||| ||| | |||||| | |||||||| | | ||
Sbjct 441613 TTTG---GAAGTCGTACTTGCCTTGGTCGTAGTCCACAAAGGCGGGCAGGGCAAGGGAGG 441669
Query 213496 CCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGT 213555
| |||||||| ||||| ||||| | | | | | |||||| || ||||||||||| ||||
Sbjct 441670 CAAGGTTGCAGACGGCAACCTCGTCGGGGGCCGAGTACTCGATAATCTCGGTGCAGAGGT 441729
Query 213556 TGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATCCTTGT 213615
|| || || ||||| |||| ||||| ||||| ||| |||| | ||||||||
Sbjct 441730 TGGAGCTGCGAATGGTTCCCAAGTTCTTCTGGTTGCTCTTCCTGTTGCAATGATCCTTGT 441789
Query 213616 AGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGAGGTACC 213675
| ||||| ||||| || ||||| ||| | | | || ||| | ||| || | |
Sbjct 441790 ACAGCATAAAGGGGTTGCCAGTCTCGGTCTGAGCCTCGAGGATCGAGTACCACAGCTTCT 441849
Query 213676 TGGCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGC-CTCGTACTGTTCGTAGAGCTCG 213734
||| || | || | || ||| | | || |||||||| ||| || | |
Sbjct 441850 GGGCGCGGATT----GTCTTGCGGCCACGGCCTTCGCGCTCGTACTTTTCATACAAAGCC 441905
Query 213735 TTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACAGGATGCGGGACACATGAGGCTC 213794
| || |||| ||| || | | || || || || ||| ||||||||| ||
Sbjct 441906 TCAAACTCGTCGCCGTAGCAGTCGGCGAGCCCAGGGCATTCGTTGGGGCACATGAGGGTC 441965
Query 213795 CAGTCCCCGT-CATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAA 213853
||||| || | | |||| ||| | || |||||| ||||| |||| ||||||||| |||
Sbjct 441966 CAGTCGCCATTCTTCTC-GACACGCTTCATGAAGAGGTCGGGGATCCACAGCGCAAGGAA 442024
Query 213854 CAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAA 213913
||||| | | | || ||| || ||| || | ||||| || || |||||
Sbjct 442025 GAGGTCGCGAGCGCGGACTTCCTCCTTGCCGTGGTTCTTTCTGAGATCAAGGAATTCAAA 442084
Query 213914 GATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCG---GCCTCTTGCCGCC 213970
|| || |||||||| ||||||| ||||||||| |||||||||| || | ||||||||
Sbjct 442085 GACATCGGCGTGCCAGGGCTCCAGGTAGATGGCGAAGGCGCCCGGTCGCTTGTTGCCGCC 442144
Query 213971 CTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGA 214030
||||| || ||||| ||||||||| ||||| | ||| || | ||||| ||
Sbjct 442145 TTGGTCGACGTATCTGGCAGTGTTGTTGAAGACTCGCAGCATGGGAACGACGCCGTTCGA 442204
Query 214031 CTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGTTGCTCATGGAGAGCCC 214090
|||||||| || || || || || |||| || | | | | | | || ||
Sbjct 442205 GGTGCCGTTGGTGCCGGCAATGTAGGATCCGGTAGCACGAATGCGGTGGACGTTCAGGCC 442264
Query 214091 TATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGATGCCGGC 214150
|| || ||||| || || ||||||||||| | | | ||| || |||||| |
Sbjct 442265 GATACCGCCGGCCATTTTAGAAATCATGGCGCAAGTCTTGAGAGTGTCGTAGATGCCCTC 442324
Query 214151 CATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTGGACGAGCC 214210
|||||||| || | | || | | |||||| || ||||| | | || |||
Sbjct 442325 GATGCTGTCTTCCTTCATGTCGACGAGGAAGCACGAGGAAAGCTGACACTGAGGCGTGCC 442384
Query 214211 AGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTTAGAGAGGAGCCTGTAGGT 214270
| |||||| || || || ||| ||| | | || || | || | ||| |||||||
Sbjct 442385 CGCGTTGAAGAGGGTAGGTGAGGCGTGGGTGAAGAATTTACTGGACATGAGGTTGTAGGT 442444
Query 214271 CTCCAGGAC 214279
||||||||
Sbjct 442445 TTCCAGGAC 442453
>seq1
Length=2302571
Score = 131 bits (144), Expect = 3e-25
Identities = 350/523 (67%), Gaps = 23/523 (4%)
Strand=Plus/Minus
Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898
|||||| || || |||| |||||||| ||||| ||||| || ||| ||||| |||||
Sbjct 1625254 CTGGTATTCACCAACTCGCTTCTCAAAAAAGTTGGTCTTGCCACCCAGGGAGATATTCTC 1625195
Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTT-CCAGCA 47957
||| || || || || | ||| || |||||| | ||| ||| | ||| ||
Sbjct 1625194 CATAAAATCAAACGGATTCGCTGTCTTGTACACCTTT-TCATTCCCGAGAGCAACCAACA 1625136
Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG 48017
|| | || || ||| | |||||||||| ||| || ||| ||||||||| | || |
Sbjct 1625135 GGCGGTCGGCAACGAATTCGATGTATTGCTTCATCAGTGTGGAGTTCATGCCGAGAAGAG 1625076
Query 48018 A-CACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATC 48076
||||| || ||||| || || || || | ||| || ||||| || | ||
Sbjct 1625075 CGCACGG-CAGAGCCTCCGTCAGGAAATCTTGCTCAATGGTGACGGCATCGGTGATGATT 1625017
Query 48077 TGCTTAACGCGGGACTCTGAGG-GTTTG-TTGCGCAGGTGCTTGGCAT---AG---AGCA 48128
| ||| ||| ||| | ||| |||| | |||||| || || ||||
Sbjct 1625016 T-CTT------GGA---TGATTTGCTTGCTTGCTCTT-TGCTTGAGATGAGAGTGCAGCA 1624968
Query 48129 TGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGA 48188
||| |||||||| ||||||| || ||||| ||| ||||| |||| |||||| |
Sbjct 1624967 GGCATGCAAAGTCGGTGTGCAAACCCTCGTCACGGGATATGAGTTCGTTTGAGAAGGTAA 1624908
Query 48189 GACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGA 48248
| || ||||||| || | || |||||||| || || | |||||| | ||| |||||
Sbjct 1624907 GCCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGACGCGAATGCACCACTGAAGA 1624848
Query 48249 AGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTG 48308
|||||||||| || || ||||| || | | | |||| || | |||||||
Sbjct 1624847 AGATGCCCTCGACAGCGGCGAAGGCAACCAATCGTTGGGCGAAGCTAGACTCCTTGTCTT 1624788
Query 48309 AGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGG 48351
||||||| | |||||||| ||||| || |||||| ||
Sbjct 1624787 GGATCCAGCGGATGGCCCAGTCGGCCTTTTTACGGATGCAAGG 1624745
Score = 95.1 bits (104), Expect = 2e-14
Identities = 179/263 (68%), Gaps = 3/263 (1%)
Strand=Plus/Minus
Query 48425 TACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCA 48484
||| |||| || || | |||||| || |||||||||||||||||| | ||| |||
Sbjct 1624605 TACGTCTCGGAATGGATATTCTCCATCATGATCTGGAACCCGTAGAAACAACGGGCTTCA 1624546
Query 48485 AACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAA 48544
|||||||| || | ||| | ||| | ||| || || ||||| || ||||| ||
Sbjct 1624545 GGAACCTGCACCTCGCCGCTGAACCGCTCAACCAGGTTTTCGTTGACGATGCCATCCGAG 1624486
Query 48545 GCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGT---GAGAGCA 48601
||||||||||| || | || || || ||||| || | || | | | || |
Sbjct 1624485 GCAGCAAAGAATGCCAAGATGTGAGAAATGAAATACTTTTCATCGTCGTTCAGGCGATTA 1624426
Query 48602 TTCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGT 48661
|||||| | || | || ||| |||||| | ||||| | |||||||| || ||
Sbjct 1624425 TTCCAGTCGTGCAAATCCTTGGACAGGTCTATCTCTTCGGCTGTCCAGAAAGAAGCCTCA 1624366
Query 48662 GCTTTTTTGTACATGCCCCATAT 48684
|| || |||||||| ||||||
Sbjct 1624365 GCCTTCTTGTACATTTGCCATAT 1624343
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 931527571772160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |