Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09] 449 sequences; 39,397,682 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq2 374 2e-98 seq1 131 3e-25 >seq2 Length=1075658 Score = 374 bits (414), Expect = 2e-98 Identities = 927/1389 (67%), Gaps = 41/1389 (3%) Strand=Plus/Plus Query 212907 GGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAG 212966 |||||||| | |||||| || || | || || | | |||||||| ||| || |||||| Sbjct 441090 GGGTTGACGACCTGGAACTCGCCCGCCAGGACGCGTCGCTGGTAAATGTTGGACGTGTAG 441149 Query 212967 GGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCC 213026 ||||||| || ||||||||| ||||||||||| | ||| || ||||||||||| || Sbjct 441150 GGCTCGAAGCACTCGTTGTTGCCCAGAATCTGCGACGTGGACGCCGTGGGCATGGGCGCG 441209 Query 213027 ACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCC--GAAGCTCTGCCCAGT 213084 | ||| || ||| | | |||||||| ||| | | || || | | |||| | Sbjct 441210 AGCAGCAGCGAGTTGCGAATCCCGTGCTCCTTGATCTG-CTCCTTGAGGGAAT-CCCACT 441267 Query 213085 CCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTT 213144 |||| | | ||| | | |||||||||||||||||||||||| |||||||| Sbjct 441268 CCCACAAGTCGGACGG---------CGTCACGTTCCACATGTCAAACTGCAGGATGCCTT 441318 Query 213145 T-GCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAG 213203 | ||| | | |||| | | | ||||||||| || | ||||||||||||||| Sbjct 441319 CAGAGGCCGGAGAT-CCCTTGAACGTGGAGTAGGGACCCTCCTCCTTGGCCAGCTCCACC 441377 Query 213204 GACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCC 213263 |||||| || ||| |||| ||||||||| ||||| |||| | |||| |||| ||| Sbjct 441378 GACGCCGTCAAGGCGGCGTGGTAGATGGTCTCAAAAATCTGCTTGTTCAGCTCGCGAGCC 441437 Query 213264 TCTGGGGACGTGAAGGGCATCATCATGCGTT-GGAACACATCAGCCAGCCCCTGGACCCC 213322 || || ||| |||||||| | ||| |||| | || |||| || || || || Sbjct 441438 TCGGGAGACTCAAAGGGCATGCGAA-GCGCAAGGAAGGCGTCGGCCAAGCCTTGAACACC 441496 Query 213323 GATGCCGATGGGTCTGTGTCTCAGGTTAGACTTG-GAGCACTCCTCCAAGGGGTAAAAGT 213381 || || ||||| | || | || ||| ||| | || || | | |||||| || Sbjct 441497 GACACCAATGGGACGATGCCGCATGTTGCTGTTGCGTGCT-TCTTGGACGGGGTAGTGGT 441555 Query 213382 TGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACT 213441 || |||||||||||||||||| || ||| |||| |||||| | | ||| || Sbjct 441556 TGACGTCGATGATCTTGTTGAGATTTCGGACAACCACGCGGGTGACGTCGTGCAG---CT 441612 Query 213442 CGTGATTGAACACGTA---GCCCCCGTCCTG---CACAAACTCAGGCAGGGCGATGCTGG 213495 || ||| |||| ||| ||| | |||||| | |||||||| | | || Sbjct 441613 TTTG---GAAGTCGTACTTGCCTTGGTCGTAGTCCACAAAGGCGGGCAGGGCAAGGGAGG 441669 Query 213496 CCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGT 213555 | |||||||| ||||| ||||| | | | | | |||||| || ||||||||||| |||| Sbjct 441670 CAAGGTTGCAGACGGCAACCTCGTCGGGGGCCGAGTACTCGATAATCTCGGTGCAGAGGT 441729 Query 213556 TGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATCCTTGT 213615 || || || ||||| |||| ||||| ||||| ||| |||| | |||||||| Sbjct 441730 TGGAGCTGCGAATGGTTCCCAAGTTCTTCTGGTTGCTCTTCCTGTTGCAATGATCCTTGT 441789 Query 213616 AGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGAGGTACC 213675 | ||||| ||||| || ||||| ||| | | | || ||| | ||| || | | Sbjct 441790 ACAGCATAAAGGGGTTGCCAGTCTCGGTCTGAGCCTCGAGGATCGAGTACCACAGCTTCT 441849 Query 213676 TGGCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGC-CTCGTACTGTTCGTAGAGCTCG 213734 ||| || | || | || ||| | | || |||||||| ||| || | | Sbjct 441850 GGGCGCGGATT----GTCTTGCGGCCACGGCCTTCGCGCTCGTACTTTTCATACAAAGCC 441905 Query 213735 TTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACAGGATGCGGGACACATGAGGCTC 213794 | || |||| ||| || | | || || || || ||| ||||||||| || Sbjct 441906 TCAAACTCGTCGCCGTAGCAGTCGGCGAGCCCAGGGCATTCGTTGGGGCACATGAGGGTC 441965 Query 213795 CAGTCCCCGT-CATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAA 213853 ||||| || | | |||| ||| | || |||||| ||||| |||| ||||||||| ||| Sbjct 441966 CAGTCGCCATTCTTCTC-GACACGCTTCATGAAGAGGTCGGGGATCCACAGCGCAAGGAA 442024 Query 213854 CAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAA 213913 ||||| | | | || ||| || ||| || | ||||| || || ||||| Sbjct 442025 GAGGTCGCGAGCGCGGACTTCCTCCTTGCCGTGGTTCTTTCTGAGATCAAGGAATTCAAA 442084 Query 213914 GATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCG---GCCTCTTGCCGCC 213970 || || |||||||| ||||||| ||||||||| |||||||||| || | |||||||| Sbjct 442085 GACATCGGCGTGCCAGGGCTCCAGGTAGATGGCGAAGGCGCCCGGTCGCTTGTTGCCGCC 442144 Query 213971 CTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGA 214030 ||||| || ||||| ||||||||| ||||| | ||| || | ||||| || Sbjct 442145 TTGGTCGACGTATCTGGCAGTGTTGTTGAAGACTCGCAGCATGGGAACGACGCCGTTCGA 442204 Query 214031 CTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGTTGCTCATGGAGAGCCC 214090 |||||||| || || || || || |||| || | | | | | | || || Sbjct 442205 GGTGCCGTTGGTGCCGGCAATGTAGGATCCGGTAGCACGAATGCGGTGGACGTTCAGGCC 442264 Query 214091 TATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGATGCCGGC 214150 || || ||||| || || ||||||||||| | | | ||| || |||||| | Sbjct 442265 GATACCGCCGGCCATTTTAGAAATCATGGCGCAAGTCTTGAGAGTGTCGTAGATGCCCTC 442324 Query 214151 CATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTGGACGAGCC 214210 |||||||| || | | || | | |||||| || ||||| | | || ||| Sbjct 442325 GATGCTGTCTTCCTTCATGTCGACGAGGAAGCACGAGGAAAGCTGACACTGAGGCGTGCC 442384 Query 214211 AGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTTAGAGAGGAGCCTGTAGGT 214270 | |||||| || || || ||| ||| | | || || | || | ||| ||||||| Sbjct 442385 CGCGTTGAAGAGGGTAGGTGAGGCGTGGGTGAAGAATTTACTGGACATGAGGTTGTAGGT 442444 Query 214271 CTCCAGGAC 214279 |||||||| Sbjct 442445 TTCCAGGAC 442453 >seq1 Length=2302571 Score = 131 bits (144), Expect = 3e-25 Identities = 350/523 (67%), Gaps = 23/523 (4%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| || || |||| |||||||| ||||| ||||| || ||| ||||| ||||| Sbjct 1625254 CTGGTATTCACCAACTCGCTTCTCAAAAAAGTTGGTCTTGCCACCCAGGGAGATATTCTC 1625195 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTT-CCAGCA 47957 ||| || || || || | ||| || |||||| | ||| ||| | ||| || Sbjct 1625194 CATAAAATCAAACGGATTCGCTGTCTTGTACACCTTT-TCATTCCCGAGAGCAACCAACA 1625136 Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG 48017 || | || || ||| | |||||||||| ||| || ||| ||||||||| | || | Sbjct 1625135 GGCGGTCGGCAACGAATTCGATGTATTGCTTCATCAGTGTGGAGTTCATGCCGAGAAGAG 1625076 Query 48018 A-CACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATC 48076 ||||| || ||||| || || || || | ||| || ||||| || | || Sbjct 1625075 CGCACGG-CAGAGCCTCCGTCAGGAAATCTTGCTCAATGGTGACGGCATCGGTGATGATT 1625017 Query 48077 TGCTTAACGCGGGACTCTGAGG-GTTTG-TTGCGCAGGTGCTTGGCAT---AG---AGCA 48128 | ||| ||| ||| | ||| |||| | |||||| || || |||| Sbjct 1625016 T-CTT------GGA---TGATTTGCTTGCTTGCTCTT-TGCTTGAGATGAGAGTGCAGCA 1624968 Query 48129 TGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGA 48188 ||| |||||||| ||||||| || ||||| ||| ||||| |||| |||||| | Sbjct 1624967 GGCATGCAAAGTCGGTGTGCAAACCCTCGTCACGGGATATGAGTTCGTTTGAGAAGGTAA 1624908 Query 48189 GACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGA 48248 | || ||||||| || | || |||||||| || || | |||||| | ||| ||||| Sbjct 1624907 GCCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGACGCGAATGCACCACTGAAGA 1624848 Query 48249 AGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTG 48308 |||||||||| || || ||||| || | | | |||| || | ||||||| Sbjct 1624847 AGATGCCCTCGACAGCGGCGAAGGCAACCAATCGTTGGGCGAAGCTAGACTCCTTGTCTT 1624788 Query 48309 AGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGG 48351 ||||||| | |||||||| ||||| || |||||| || Sbjct 1624787 GGATCCAGCGGATGGCCCAGTCGGCCTTTTTACGGATGCAAGG 1624745 Score = 95.1 bits (104), Expect = 2e-14 Identities = 179/263 (68%), Gaps = 3/263 (1%) Strand=Plus/Minus Query 48425 TACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCA 48484 ||| |||| || || | |||||| || |||||||||||||||||| | ||| ||| Sbjct 1624605 TACGTCTCGGAATGGATATTCTCCATCATGATCTGGAACCCGTAGAAACAACGGGCTTCA 1624546 Query 48485 AACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAA 48544 |||||||| || | ||| | ||| | ||| || || ||||| || ||||| || Sbjct 1624545 GGAACCTGCACCTCGCCGCTGAACCGCTCAACCAGGTTTTCGTTGACGATGCCATCCGAG 1624486 Query 48545 GCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGT---GAGAGCA 48601 ||||||||||| || | || || || ||||| || | || | | | || | Sbjct 1624485 GCAGCAAAGAATGCCAAGATGTGAGAAATGAAATACTTTTCATCGTCGTTCAGGCGATTA 1624426 Query 48602 TTCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGT 48661 |||||| | || | || ||| |||||| | ||||| | |||||||| || || Sbjct 1624425 TTCCAGTCGTGCAAATCCTTGGACAGGTCTATCTCTTCGGCTGTCCAGAAAGAAGCCTCA 1624366 Query 48662 GCTTTTTTGTACATGCCCCATAT 48684 || || |||||||| |||||| Sbjct 1624365 GCCTTCTTGTACATTTGCCATAT 1624343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931527571772160