Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09] 449 sequences; 39,397,682 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq2 322 9e-83 seq1 120 6e-22 >seq2 Length=1075658 Score = 322 bits (356), Expect = 9e-83 Identities = 854/1286 (66%), Gaps = 55/1286 (4%) Strand=Plus/Plus Query 221416 CGTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGG 221474 ||||| ||| |||||||||||||||||||| ||| |||||| || ||| | ||||||| Sbjct 441383 CGTCAAGGCGGCGTGGTAGATGGTCTCAAAAATCTGCTTGTTCAG-CTCGCGAGCCTCGG 441441 Query 221475 GAGAAGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATAC 221534 |||| |||||||| || ||| | ||| ||||||||| || || || |||| || Sbjct 441442 GAGACTCAAAGGGCATGCGAAGCGCAAGGAAGGCGTCGGCCAAGCCTTGAACACCGACAC 441501 Query 221535 CGATGGGCCTGTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGAC 221592 | ||||| | || | | ||||| | ||| |||||| | ||||| || |||||| Sbjct 441502 CAATGGGACGATGCCGCATGTTGCTGTTGCGT--GCTTCTTGGACGGGGTAGTGGTTGAC 441559 Query 221593 GTCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTG 221652 |||||| | |||||||| || | ||| |||||| ||| | | || | Sbjct 441560 GTCGATGATCTTGTTGAGATTTCG------GAC---AACCACGCGGGTGACGTCGTGCAG 441610 Query 221653 ATT---GAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAAC 221709 || ||| | ||| ||| ||||| | |||||||| ||| ||||||| Sbjct 441611 CTTTTGGAAGTCGTACTTGCCTTGGTCGTAG------TCCACAAAGGCGGGCAGGGCAAG 441664 Query 221710 GCTGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACA 221769 | ||| ||||| || ||||| |||||||| | | |||| || ||||| || || Sbjct 441665 GGAGGCAAGGTTGCAGACGGCAACCTCGTCGGGGGCCGAGTACTCGATAATCTCGGTGCA 441724 Query 221770 GAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTC 221829 ||||||| || ||||| |||| || || || || ||| | ||| | || Sbjct 441725 GAGGTTGGAGCTGCGAATGGTTCCCAAGTTCTTCTGGTTGCTCTTCCTGTTGCAATGATC 441784 Query 221830 CTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAG 221889 |||||| ||||||||||| ||||||||| ||||||| | || ||| || ||| || Sbjct 441785 CTTGTACAGCATAAAGGGGTTGCCAGTCTCGGTCTGAGCCTCGAGGATCGAGTACCACAG 441844 Query 221890 TTCTCTGG-CGCTCACCGTCCTCTTGAC------TGCACCCTCGGTCTTTTCATACCCGG 221942 | ||||| ||| | ||| | | | | | | |||| |||||||||| Sbjct 441845 CT-TCTGGGCGCGGATTGTCTTGCGGCCACGGCCTTCGCGCTCGTACTTTTCATAC---- 441899 Query 221943 TATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGAC 222002 | ||| | |||||| || ||||| ||| | || || || || | ||| | Sbjct 441900 ---AAAGCCT--CAAACTCGTCGCCGTAGCAGTCGGCGAGCCCAGGGCATTCGTTGGGGC 441954 Query 222003 ACATCAGACTCCAGT-GC--TTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCC 222059 |||| || |||||| || || || || ||| | || |||||||||||| ||||||| Sbjct 441955 ACATGAGGGTCCAGTCGCCATTCTTCTC---GACACGCTTCATGAAGAGGTCGGGGATCC 442011 Query 222060 ACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGAT 222119 ||||||| | ||||| || | | || |||||| ||||| ||| || || |||| Sbjct 442012 ACAGCGCAAGGAAGAGGTCGCGAGCGCGGACTTCCTCCTTGCCGTGGTTCTTTCTGAGAT 442071 Query 222120 CCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTC 222179 | | || ||||| | || |||||||| |||||||| |||| ||| | ||||| |||| Sbjct 442072 CAAGGAATTCAAAGACATCGGCGTGCCAGGGCTCCAGGTAGATGGCGAAGGCGCCCGGTC 442131 Query 222180 GCTTGTTGCCACCCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGT 222238 |||||||||| || || || || || ||| | |||||||| || || | || Sbjct 442132 GCTTGTTGCCGCCTTGGTCGACGTATCT-GGCAGTGTTGTTGAAGACTCGCAGCATGGGA 442190 Query 222239 ACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTA 222298 || | ||||| || ||||||||||| |||||| | ||| || | | | Sbjct 442191 ACGACGCCGTTCGAGGTGCCGTTGGTGCCGGCAATGTAGGATCCGGTAGCACGAATGCGG 442250 Query 222299 CTGGCAGACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTG 222358 | | || ||||||||| ||||| ||| || ||||||||||| ||||||||||| Sbjct 442251 TGGACGTTCAGGCCGATACCGCCGGCCATTTTAGAAATCATGGCGCAAGTCTTGAGAGTG 442310 Query 222359 TCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGA 222418 || ||||||||| || ||| ||||| | || | || || || || || | |||| Sbjct 442311 TCGTAGATGCCCTCGATGCTGTCTTCCTTCATGTCGACGAGGAAGCACGAGGAAAGCTGA 442370 Query 222419 GATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGAC 222478 | | | | | ||||| || || || || |||||| || ||| | || ||| Sbjct 442371 CACTGAGGCGTGCCCGCGTTGAAGAGGGTAGGTGAGGCGTGGGTGAAGAATTTACTGGAC 442430 Query 222479 ATCAGATCGTACGTCTCTACGACTCTGGCGATGTTGTC-CCCGTGAATCTGCATGGCGCA 222537 || || | ||| || || | ||| | | |||||||| ||| || | | | || Sbjct 442431 ATGAGGTTGTAGGTTTCCAGGACGCGCTCAATGTTGTCTCCCCAGATGCCG-ACAGCAAC 442489 Query 222538 TCTCATGTACATGTACTGGGGCCTCTCCACA--GGACCCTTGGAGCTGGAGAGCAGGTAC 222595 | |||| ||||| ||| || | || ||| || | |||| || || ||| Sbjct 442490 ACGCATGATCATGTGCTGAGGTCGTTCGACAATCTTGCCGTCCAGCT--TCAGGAGATAC 442547 Query 222596 GATTTTTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACG 222655 ||| ||||| |||||||| |||||||| | || |||||||| ||| ||| | | Sbjct 442548 GATCGCTCCAGCGTCTTGAAACCAAAGTACTGATAGTTGAAGTCTCTCTCGTAAACAATG 442607 Query 222656 GCGGCGTCCAGCTCCGACTTGTGCTT 222681 || | ||| |||||| |||||||| Sbjct 442608 GCAGAGTCGAGCTCCTCTTTGTGCTT 442633 Score = 93.3 bits (102), Expect = 8e-14 Identities = 132/185 (71%), Gaps = 8/185 (4%) Strand=Plus/Plus Query 221070 CGTCCGTCCATAGACCCCTCTCTTCCAGCACCTTGA----CCATGTGCTTGTTCACCACT 221125 |||| | ||| |||||| | || | || |||||| ||||| | || || || Sbjct 441046 CGTCTGACCACAGACCCATGTCGACGAGATCCTTGAGAAGCCATGGG----TTGACGACC 441101 Query 221126 TGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGATGCTC 221185 ||||| || |||| || || | | |||||| | ||| || ||| | || |||| || | Sbjct 441102 TGGAACTCGCCCGCCAGGACGCGTCGCTGGTAAATGTTGGACGTGTAGGGCTCGAAGCAC 441161 Query 221186 TCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCAGACTG 221245 |||||||||||||| ||||| | |||| || ||||||||||| || | |||||| | Sbjct 441162 TCGTTGTTGCCCAGAATCTGCGACGTGGACGCCGTGGGCATGGGCGCGAGCAGCAGCGAG 441221 Query 221246 TTGCG 221250 ||||| Sbjct 441222 TTGCG 441226 >seq1 Length=2302571 Score = 120 bits (132), Expect = 6e-22 Identities = 119/154 (77%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 25883 TGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCT 25942 |||| ||||| || ||||| ||||||||||| ||||| ||| | || ||| ||||||| | Sbjct 1624818 TGGTTGCCTTCGCCGCTGTCGAGGGCATCTTCTTCAGTGGTGCATTCGCGTCCATCTTTT 1624877 Query 25943 GGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGG 26002 |||||||| || || |||||||||||| ||| || ||||| ||||| | | | Sbjct 1624878 GGCTCAAGAAGCGCGGCCTCATGCCCGGGCTTACCTTCTCAAACGAACTCATATCCCGTG 1624937 Query 26003 ACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCT 26036 |||||||| | |||| || ||||| |||||||| Sbjct 1624938 ACGAGGGTTTGCACACCGACTTTGCATGCCTGCT 1624971 Score = 113 bits (124), Expect = 8e-20 Identities = 186/265 (70%), Gaps = 5/265 (2%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 |||||| | ||||||||||||||| | || |||||| ||||||||||| || ||| Sbjct 1624343 ATATGGCAAATGTACAAGAAGGCTGAGGCTTCTTTCTGGACAGCCGAAGAGATAGACCTG 1624402 Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGT-- 25594 ||||||| || ||| |||| | || || ||||| | | | | ||| | Sbjct 1624403 TCCAAGGATTTGCACGACTGGAATAATCGCCTGAACGACGATGAAAAGTATTTCATTTCT 1624462 Query 25595 -ACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 || | |||||||||||||| ||||| ||||| || || ||||| || ||| ||| | Sbjct 1624463 CACATCTTGGCATTCTTTGCTGCCTCGGATGGCATCGTCAACGAAAACCTGGTTGAGCGG 1624522 Query 25654 TTCACCAGGGAAGTGCA-GTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCAT 25712 |||| | | || ||||| || | | || ||| ||||||||||| |||||||| || Sbjct 1624523 TTCAGCGGCGAGGTGCAGGTTCCT-GAAGCCCGTTGTTTCTACGGGTTCCAGATCATGAT 1624581 Query 25713 CGAAAATGTGCACTCTGAGGTGTAT 25737 || ||| | || || ||| |||| Sbjct 1624582 GGAGAATATCCATTCCGAGACGTAT 1624606 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928839586858560