Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09] 449 sequences; 39,397,682 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq2 271 1e-67 seq56 194 2e-44 seq72 178 2e-39 seq67 167 3e-36 seq3 100 4e-16 seq8 89.7 7e-13 >seq2 Length=1075658 Score = 271 bits (300), Expect = 1e-67 Identities = 555/823 (67%), Gaps = 9/823 (1%) Strand=Plus/Minus Query 196061 GCTCTTCGTCGGCTTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCT 196120 ||||| ||||| || | || || ||||| |||||||| || || || ||||| | || Sbjct 166636 GCTCTCCGTCGTCTCCGAACCGCTTGTGAGCGTGCCAAGCGTACCCTTTCTTCCTCCGCC 166577 Query 196121 CAAACAATGGTTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACC 196180 ||||| ||||||||||||| | || || || || |||||||| || | || ||| Sbjct 166576 CAAACCTCCATTGAGATTGATTCTCTCTTCGAGGGCATCGACTTCTACACCTCCATCACC 166517 Query 196181 CGTGCACGTTTTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAA 196240 || || ||||| |||||| | | || | || | || | |||||||| Sbjct 166516 CGAGCCCGTTTCGAAGAGCTTTGCCAGGACCTCTTCCGCTCCACCATCCAGCCTGTTGAC 166457 Query 196241 CAAGTACTTCGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGA 196300 | || ||| ||| || ||||| || ||| |||| | || || || || || || Sbjct 166456 CGCGTTCTTGCTGATGCCAAGATTGACAAGAGCCAGGTCCACGAGATCGTTCTCGTTGGC 166397 Query 196301 GGATCAACCCGTATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGAT 196360 ||||| ||||||||||| || || || | | | || ||||||| || || Sbjct 166396 GGATCCACCCGTATTCCCCGTATCCAGAAGCTCATCACCGACTACTTCAATGGAAAGGAG 166337 Query 196361 TTAAACAAAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCT 196420 ||||| | |||||||| || || || |||||||| ||||| || |||||||||||| Sbjct 166336 CCCAACAAGTCCATCAACCCTGACGAGGCGGTTGCTTACGGTGCCGCTGTTCAGGCTGCT 166277 Query 196421 ATTCTCTCAGGTGTTGACAATAATAACGTCCA------AGATCTTCTGCTACTTGATGTT 196474 || || || |||| | || | | ||||| |||||| |||| || || ||| Sbjct 166276 ATCCTGTCTGGTGAT-ACCAGCTCCAAGTCCACCAACGAGATCT--TGCTCCTCGACGTT 166220 Query 196475 GCACCCGTATCCCTGGGTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGG 196534 || || | || |||||| | || || || || ||| | ||||| || | || | | Sbjct 166219 GCCCCGCTCTCGCTGGGTATCGAGACTGCAGGCGGTATGATGACGAAGCTCATCCCTCGC 166160 Query 196535 AACACAACTATTCCGACTAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAACCA 196594 ||||| || ||||| || |||||| | ||||| || || | ||||| || || || Sbjct 166159 AACACCACCATTCCTACCAAGAAGTCCGAGGTCTTCTCCACCTTCTCCGACAACCAGCCC 166100 Query 196595 GGTGTTCATATTCAAGTATATGAAGGAGAACGCTCCCGTGCAAAGGATAACCATCTACTT 196654 ||||| | || || || || || || || ||| || | ||||| ||| | || | Sbjct 166099 GGTGTGCTCATCCAGGTCTACGAGGGTGAGCGCCAGCGCACCAAGGACAACAACCTGATG 166040 Query 196655 GGAACTTTCGATTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTT 196714 || | || || | || || ||||| |||| || | |||||||| ||||| | ||| Sbjct 166039 GGCAAGTTTGAGCTTACCGGAATTCCTCCTGCTCCTCGGGGTGTTCCCCAGATCGAGGTT 165980 Query 196715 TGCTTCGATATAGACGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGC 196774 || ||| | || || || || || | || || | |||| || |||| | ||| Sbjct 165979 ACATTTGATCTCGATGCCAACGGTATCATGAATGTTTCCGCTGTTGAGAAGGGCACCGGC 165920 Query 196775 AAATCTGAAAAGATTGTGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAA 196834 || || | |||||| | || ||||| |||||||| || || || |||||||| ||||| Sbjct 165919 AAGTCCAACAAGATTATCATCACCAACGACAAGGGACGTCTGTCCAAGGAGGAGATTGAG 165860 Query 196835 CGTATGGTTCAAGATGCGGAAAAGTACAGGGAAGAAGACGAGG 196877 || ||| || ||||| || ||||||| ||| ||||| |||| Sbjct 165859 CGCATGCTTTCTGATGCCGAGAAGTACAAGGAGGAAGATGAGG 165817 >seq56 Length=194926 Score = 194 bits (214), Expect = 2e-44 Identities = 170/212 (80%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||||||||| || || || || |||||||| ||||| || || |||||||||||| Sbjct 69626 ATGCAAATCTTTGTCAAGACACTGACGGGAAAAACAATCACGCTGGAAGTTGAGTCGTCA 69685 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || ||| |||| | ||||||||||| |||||||| ||||| ||||| ||| Sbjct 69686 GACACCATTGACAACGTCAAGTCGAAGATTCAAGACAAGGAAGGGATTCCCCCCGACCAG 69745 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || |||||||| ||||| || || ||||| || || ||||| || | || || |||||| Sbjct 69746 CAGCGACTTATCTTTGCCGGCAAGCAGCTCGAGGACGGACGAACATTGGCCGACTACAAC 69805 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073 | || |||||||| || || ||||| || || Sbjct 69806 ATCCAGAAGGAGTCCACCCTGCACCTGGTGCT 69837 Score = 190 bits (210), Expect = 3e-43 Identities = 179/228 (79%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||||||||| || || ||||| || ||||| || |||||||||||||| ||||| || Sbjct 69170 ATGCAAATCTTCGTAAAGACCCTCACCGGAAAGACCATCACCCTCGAGGTGGAGTCTTCT 69229 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| || |||| | || |||||||| ||||| ||||| || ||||| ||| Sbjct 69230 GACACCATCGACAATGTCAAGTCGAAAATTCAAGACAAGGAGGGCATCCCGCCCGACCAG 69289 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || | || ||||||||||||||||| |||||||| || ||||| || || |||||| Sbjct 69290 CAGCGCTTGATCTTTGCTGGTAAACAGCTCGAAGATGGCCGCACCCTGGCCGACTACAAC 69349 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 | || ||||| || || || || || ||||| | || || || ||| Sbjct 69350 ATCCAGAAGGAATCCACCCTTCATCTGGTTCTTCGCCTGCGTGGCGGT 69397 Score = 179 bits (198), Expect = 5e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || || || || || || || || || || ||||| |||||||| |||||||| Sbjct 69854 ATGCAGATTTTCGTCAAGACGCTGACCGGGAAGACCATCACGCTCGAGGTGGAGTCGTCT 69913 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || || || ||||| | || | || |||||||| ||||| |||||||| || |||||| Sbjct 69914 GATACCATTGATAATGTGAAGTCGAAAATTCAAGACAAGGAGGGCATTCCTCCTGATCAG 69973 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || ||||| || ||||||||||| |||||||| ||||| | ||||| || || |||||| Sbjct 69974 CAGCGACTCATCTTTGCTGGTAAGCAGCTTGAGGATGGGAGAACCCTAGCCGACTACAAC 70033 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 ||||||||||||| || | ||||| || || | || || ||||| Sbjct 70034 ATTCAAAAGGAGTCGACGTTGCACCTGGTGCTCCGCCTGCGTGGTGG 70080 >seq72 Length=148906 Score = 178 bits (196), Expect = 2e-39 Identities = 729/1139 (64%), Gaps = 23/1139 (2%) Strand=Plus/Plus Query 195746 CAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATC 195805 ||||| ||||| || ||||| |||| || || || ||||| ||| || |||| | Sbjct 78091 CAACGTCAGGCCACCAAGGATGCTGGTGTCATCGCCGGTCTTAACGTGCTCCGAATCGTG 78150 Query 195806 AATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAA 195865 ||||| || || || ||||| ||||| || ||||||||||||| | ||| || | | | Sbjct 78151 AATGAGCCCACCGCCGCTGCCATTGCCTACGGTCTGGACAAGACCGAGGGAGA-GCGACA 78209 Query 195866 AATGTATTGATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAA 195925 || |||| ||| || ||||||||||| || || ||||| || |||||| || || Sbjct 78210 GATC-ATTG-TCTACGACCTCGGTGGTGGCACTTTCGATGTTTCCCTTCTCTCCATCGAT 78267 Query 195926 GGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTC 195985 || | || ||||| ||| ||||| || ||||| ||||| ||||| || |||||| Sbjct 78268 CAGGGCGTCTTTGAAGTGCTGGCCACTGCCGGCGATACCCATCTTGGTGGCGAGGATTTC 78327 Query 195986 GATGCACGTCTTCTCCGTCATTTGTCTGATGAGTTCCGTCGAAAGAATAAGAAAGATATT 196045 ||| || | || ||| || | | || | ||| | || || ||| Sbjct 78328 GATCAGCGCATCATCAATCACTTCGCCAAGTCGTACAACAAGAAGCACAACGTGGACATT 78387 Query 196046 TCTGGAAATCCTAGGGCTCTTCGTCGGCTTAGGACTGCATGTGAACGTGCCAAACGAACT 196105 | ||| | |||| | || ||| | | | | ||| ||||| || ||| Sbjct 78388 ACCAAGGATCTCAAGGCTATGGGTAAGCTCAAGCGCGAAGCTGAGAAGGCCAAGCGTACT 78447 Query 196106 CTCTCTTCTACGGCTCAAACAATGG--TTGAGATTGATTCGTTGTTTGACGGAATTGACT 196163 || |||||| | | | | || | | | |||||||| | || ||||| || | || | Sbjct 78448 CTGTCTTCT-CAGATGAG-CACTCGCATCGAGATTGAAGCCTTCTTTGAAGGCAAGGATT 78505 Query 196164 TCTATACAACTATTACCCGTGCACGTTTTGAAGAGTTAAACTCTGATTTGTTTAGGAAGT 196223 ||| || | || || || ||||| ||| | ||| ||| | || | |||| Sbjct 78506 TCTCCGAGACCCTGACTCGCGCCAAGTTTGAGGAGCTCAACATGGATCTTTTCAAGAAGA 78565 Query 196224 GTATGGAACCTGTTGAACAAGTACTTCGTGACGCAAAGATGGATAAGTCTAAGGTTGATG 196283 | || | ||||| || || ||||| || || || | | ||| | | || || | Sbjct 78566 CTCTGAAGCCTGTCGAGCAGGTACTCAAGGATGCCAATGTCAAGAAGACGGAAGTGGACG 78625 Query 196284 AAATTGTCCTTGTGGGAGGATCAACCCGTATTCCGAAGATTCAACAGATGCTTTCT---- 196339 | |||||||| || || || || || ||||| || ||| | || ||| || Sbjct 78626 ACATTGTCCTCGTCGGCGGTTCTACTCGTATCCCCAAGGTGCAG-----GCTCTCATCGA 78680 Query 196340 AGCTT-CTTCAATAATAAAGATTTAAACAAAACGATCAACCCGGATGAAGCAGTTGCTTA 196398 || | ||| | || | | ||| |||||||| || || || || |||| Sbjct 78681 AGAGTACTTTGGTGGGAAGAAGGCATCCAAGGGTATCAACCCTGACGAGGCTGTCGCTTT 78740 Query 196399 TGGTGCGGCCGTTCAGGCTGCTATTCTCTCAGGTGTTGACAATAATAACGTCCAAGATCT 196458 |||||| || || ||||| | | | ||||| || | || || | | | | ||| Sbjct 78741 TGGTGCCGCTGTCCAGGCCGGTGTCCTCTCTGGCGAGGAAGGTACTGAGG----AAATCG 78796 Query 196459 TCTGCTACTTGATGTTGCACCCGTATCCCTGGGTCTTGAAACAGCGGGTGGTGTTATGAC 196518 | || | || || || | | | || ||| | || || ||||||| |||||||| Sbjct 78797 TT--CTCATGGACGTCGCCGCTCTTACACTCGGTATCGAGACCACGGGTGGGGTTATGAC 78854 Query 196519 TAAAATTATTGATAGGAACACAACTATTCCGACTAAGAAGGAACAAGTCTTTTCAACGTA 196578 || | ||| | | ||||| | ||||| || ||| || |||| || || Sbjct 78855 CAAGCTCATTCCTCGCAACACTCCCATTCCTACCCGCAAGAGCCAGATCTTCTCTACTGC 78914 Query 196579 TTCCGATAATCAACCAGGTGTTCATATTCAAGTATATGAAGGAGAACGCTCCCGTGCAAA 196638 |||||||||| || | |||| || || || || || || ||||| |||| | || Sbjct 78915 CGCCGATAATCAGCCCGTGGTTCTGATCCAGGTCTACGAGGGTGAACGGTCCCTCACCAA 78974 Query 196639 GGATAACCATCTACTTGGAACTTTCGATTTGACGGGGATTCCAGCTGCACCCAGAGGTGT 196698 ||||||| | || || || | ||||| | || || || || |||| || |||| || Sbjct 78975 GGATAACAACCTTCTCGGCAAGTTCGAGCTTACCGGCATCCCCCCTGCCCCTCGAGGCGT 79034 Query 196699 TCCACAGATTAATGTTTGCTTCGATATAGACGCAAATGGAATTCTAAACGTCACAGCTGA 196758 || |||||| | |||| ||||| | || || ||||| || || || || | || | Sbjct 79035 CCCTCAGATTGAGGTTTCTTTCGAGCTTGATGCCAATGGTATCCTGAAAGTGTCTGCCCA 79094 Query 196759 GGACAAGGCTTCTGGCAAATCTGAAAAGATTGTGATTACCAATGACAAGGGGCGGCTTTC 196818 || |||| | | ||||| || || || |||||||| ||||| || ||| | Sbjct 79095 CGATAAGGGTACAGGCAAGCAGGAGTCCATCACCATCACCAATGATAAGGGTCGTCTTAC 79154 Query 196819 TAAGGAGGAAATTGAACGTATGGTTCAAGATGCGGAAAAGTACAGGGAAGAAGACGAGG 196877 | ||||||||||||| || |||||| || || || |||||| ||| || ||| ||| Sbjct 79155 TCAGGAGGAAATTGATCGCATGGTTGCCGAGGCCGAGAAGTACGCGGAGGAGGACAAGG 79213 >seq67 Length=171618 Score = 167 bits (184), Expect = 3e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || || || || ||||| || || || || |||||||||||||| ||||| || Sbjct 155913 ATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACCATCACCCTCGAGGTGGAGTCTTCC 155854 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| || |||| ||||||| || || ||||| ||||| || ||||| ||| Sbjct 155853 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 155794 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || ||||| || |||||||| || ||||| || ||||| || ||||| || || |||||| Sbjct 155793 CAGCGACTCATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTGGCCGACTACAAC 155734 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 | || |||||| || || ||| | || || | || || ||||| Sbjct 155733 ATCCAGAAGGAGAGCACCCTGCACTTGGTGCTGCGCCTGCGCGGTGG 155687 >seq3 Length=991023 Score = 100 bits (110), Expect = 4e-16 Identities = 212/316 (67%), Gaps = 3/316 (1%) Strand=Plus/Plus Query 195663 AGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACTG 195722 |||||||||||| ||| || | | || |||| || || | || || | |||| Sbjct 299342 AGATGAAGGAGATTGCCGAGACCAAGCTCGGCAAAAAGGTTGAAAAGGCCGTCATCACTG 299401 Query 195723 TACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGG 195782 | ||||| ||||||| || || || ||||| || ||||| || | || ||||| | Sbjct 299402 TCCCTGCCTACTTCAACGACAACCAGCGCCAGGCAACCAAGGATGCCGGCGCCATTGCCG 299461 Query 195783 GTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGG 195842 | || ||| || | || ||||| || || || || ||||| ||||| || ||||| | Sbjct 299462 GCCTCAACGTCCTCCGCATCATCAACGAGCCCACTGCCGCTGCCATTGCCTACGGTCTCG 299521 Query 195843 ACAAGAACAAG---GACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGT 195899 | |||| ||| | || || || | |||| || | ||||| ||||| | Sbjct 299522 GCTCCGGCAAGACTGACAAGGAGCGCAACGTGCTCATCTACGACTTGGGTGGCGGTACCT 299581 Query 195900 TTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTG 195959 |||| || || |||||||| || | || || | ||| || |||||||| ||||||| Sbjct 299582 TTGACGTGTCTCTTCTCAACATCCAGGGCGGCGTCTTCACCGTCAAGGCTACCGCTGGTG 299641 Query 195960 ATACTCATCTAGGTGG 195975 | || || || || || Sbjct 299642 ACACCCACCTGGGCGG 299657 >seq8 Length=887404 Score = 89.7 bits (98), Expect = 7e-13 Identities = 219/331 (66%), Gaps = 12/331 (4%) Strand=Plus/Plus Query 195661 TAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGAC 195720 |||||||||||||||||| || ||| | | || | || || |||| || || || Sbjct 579252 TAAGATGAAGGAGACTGCCGAGGCTTACCTCTCCAAGCCCGTCAAGAATGCTGTCGTCAC 579311 Query 195721 TGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGC 195780 ||| ||||| ||||||| ||| | || ||||| || || || |||| | ||||| Sbjct 579312 TGTCCCTGCCTACTTCAACGATGCTCAGCGACAAAGCACCAAAGATGCTGGTCAAATTGC 579371 Query 195781 GGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCT 195840 || || ||| ||| | || ||||||| || || || || || | ||||||||||| Sbjct 579372 TGGCCTCAACGTTCTCCGCGTTGTCAATGAGCCTACTGCCGCAGCCCTCGCTTATGGTCT 579431 Query 195841 GGACAAGAACAAGGACGAAGATAAAAATGTATT---GATCTTTGATCTCGGTGGTGGTAC 195897 | |||| ||| || | | ||| | ||| ||||||||||| ||||| Sbjct 579432 ---CGAGAAGGAGGCCG------ACAGTGTCGTCGCAGTCTACGATCTCGGTGGCGGTAC 579482 Query 195898 GTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGG 195957 |||||| | || | | | || | ||| | || || || || | || || Sbjct 579483 CTTTGATATTTCCATCTTGGAGATCCAGAACGGTGTTTTTGAGGTGAAATCCACCAACGG 579542 Query 195958 TGATACTCATCTAGGTGGTGAAGATTTCGAT 195988 |||||| ||||| || |||||||| || ||| Sbjct 579543 TGATACGCATCTTGGCGGTGAAGACTTTGAT 579573 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657858707747280