Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09] 449 sequences; 39,397,682 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq5 102 2e-16 seq3 89.7 2e-12 >seq5 Length=962876 Score = 102 bits (112), Expect = 2e-16 Identities = 138/191 (72%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 251472 GGTGAAGC-GAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAA 251530 || ||||| | || || |||| | ||| | || |||||||||||||| |||| ||| | Sbjct 383525 GGAGAAGCTGCGACGCGCCGTAGGCAATGAGGCAGTCACGCTCCATTTCCCCGAGACGCA 383466 Query 251531 GACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGA 251590 | || || || |||| || |||||||| || || || |||||| | || | || || Sbjct 383465 GCCCGCCGTCTCGAGACCGACCCTCGGTCGGTTGCCGCGTGAGAATGGCCCTGGGTCCAC 383406 Query 251591 TGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGAC 251650 ||||||| ||| ||| || | ||||| ||||| || ||||||||| | ||||| Sbjct 383405 GGGAGCGGGAATGCATCTTGTCCTGGACCATGTGCTTCAGGCGCTGGTAGTAGATGGGAC 383346 Query 251651 CGATGAAGATG 251661 || | |||||| Sbjct 383345 CGTTAAAGATG 383335 >seq3 Length=991023 Score = 89.7 bits (98), Expect = 2e-12 Identities = 159/228 (70%), Gaps = 8/228 (4%) Strand=Plus/Plus Query 302620 GTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCT 302679 || || || || || || || || || | ||||| |||| || |||||||| | ||| Sbjct 312230 GTCTTGACGGCCGTGTCGATGAGGCCCTCGCGACCGGCCATGGCGTGGAAGAAGAACTCG 312289 Query 302680 TCCGGTCGT-AGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATC 302738 ||| ||| || || | | | ||| |||| ||||| || || ||||||||||| | Sbjct 312290 GTCGG-CGTCAGGCCGCGCAGGTACGAGTTCTCGACGAAGCCGCGGGCCTCGGGCGAGTA 312348 Query 302739 GTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCC 302798 |||| |||||| ||||| ||||| |||| || | |||| | ||||| ||||| || Sbjct 312349 GTCGTCCTTGGTGAAGTGCGGCAGCGTCCGGTATTTGAAGCCAAAGGGGATGCGCTTGCC 312408 Query 302799 ATCAACGTTCTGCTGTC---CCAGGCACGAAATCATCTGCGAAATATT 302843 || || ||||||| | ||||| || ||||||| || || || Sbjct 312409 CTCGACAATCTGCTGGCCGACCAGGGCCG---TCATCTGGGAGATGTT 312453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471809132909313