Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09] 449 sequences; 39,397,682 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq2 170 2e-36 seq3 156 5e-32 seq36 149 8e-30 seq66 131 2e-24 seq1 109 7e-18 seq48 100 3e-15 >seq2 Length=1075658 Score = 170 bits (188), Expect = 2e-36 Identities = 225/312 (72%), Gaps = 0/312 (0%) Strand=Plus/Plus Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125 ||||||||||| | || |||| ||| ||||| || |||||||| |||| |||||| || Sbjct 442146 TGGTCGACGTATCTGGCAGTGTTGTTGAAGACTCGCAGCATGGGAACGACGCCGTTCGAG 442205 Query 1630126 TCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCG 1630185 |||||||||||| || | ||||| |||| || || | ||| || | |||| Sbjct 442206 GTGCCGTTGGTGCCGGCAATGTAGGATCCGGTAGCACGAATGCGGTGGACGTTCAGGCCG 442265 Query 1630186 ATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCG 1630245 || ||||||||| || || || | ||||| ||||| |||||||||||||||||| Sbjct 442266 ATACCGCCGGCCATTTTAGAAATCATGGCGCAAGTCTTGAGAGTGTCGTAGATGCCCTCG 442325 Query 1630246 ATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCCG 1630305 || ||| |||||||||| ||||| |||||||| || || || | |||||| Sbjct 442326 ATGCTGTCTTCCTTCATGTCGACGAGGAAGCACGAGGAAAGCTGACACTGAGGCGTGCCC 442385 Query 1630306 GCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGTG 1630365 ||||||||||| || || | || |||||| || | | |||||| || |||||| Sbjct 442386 GCGTTGAAGAGGGTAGGTGAGGCGTGGGTGAAGAATTTACTGGACATGAGGTTGTAGGTT 442445 Query 1630366 GCGAGCACGCGC 1630377 | || |||||| Sbjct 442446 TCCAGGACGCGC 442457 Score = 127 bits (140), Expect = 2e-23 Identities = 338/518 (65%), Gaps = 14/518 (3%) Strand=Plus/Plus Query 1628090 GGTCGGCGACGACAAACTTGGGCAGGGCCACGCTGGAAAGGTTGCAAGTCGCCACTTCCG 1628149 ||||| | | ||||| ||||||||| | | || ||||||||| || || || Sbjct 441634 GGTCGTAGTCCACAAAGGCGGGCAGGGCAAGGGAGGCAAGGTTGCAGACGGCAACCTCGT 441693 Query 1628150 TGGGCGACGAAAACTGGACGATCTCGGTGCACAGGTTGGC-CGACGTCGTCGTACCCAGG 1628208 ||| | ||| ||| || ||||||||||| ||||||| | || | || |||| | Sbjct 441694 CGGGGGCCGAGTACTCGATAATCTCGGTGCAGAGGTTGGAGCTGCGAA-TGGTTCCCAAG 441752 Query 1628209 TTCTGCTGGTTGGTGGTCAGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTC 1628268 |||| ||||||| | || |||| ||||||| ||||| |||| ||| ||| Sbjct 441753 TTCTTCTGGTTGCTCTTCCTGTTGCAATGATCCTTGTACAGCATAAAGGGGTTGCCAGTC 441812 Query 1628269 TCGATCTGCGCCGCGACGATGGCCGACCAGA---TCTGGCGCGCGGGCACGACAGTCC-G 1628324 ||| |||| ||| ||| ||| | |||| | ||||| |||||| | ||| | Sbjct 441813 TCGGTCTGAGCCTCGAGGATCGAGTACCACAGCTTCTGG-GCGCGG-----ATTGTCTTG 441866 Query 1628325 CG--CGCGGCCCTNNNNNNNNNNNNNNNNNNNNNNNNNNTCAAAGGCCGCGCCGTAGCAC 1628382 || | ||||| | ||||| | |||||||||| Sbjct 441867 CGGCCACGGCCTTCGCGCTCGTACTTTTCATACAAAGCCTCAAACTCGTCGCCGTAGCAG 441926 Query 1628383 TCGTGCAGGCCGGGCGCCTCGGACGGACAAAAGAGCGACCAGTCGCCACCGGTCACCGCG 1628442 ||| || || || ||| || || | ||| | |||||||||| || | | Sbjct 441927 TCGGCGAGCCCAGGGCATTCGTTGGGGCACATGAGGGTCCAGTCGCCATTCTTCTCGACA 441986 Query 1628443 CGGCGCATAAAGAGGTCACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCC 1628502 || ||| |||||||| ||||||| || ||||||||||| || ||| ||| Sbjct 441987 CGCTTCATGAAGAGGTCGGGGATCCACAGCGCAAGGAAGAGGTCGCGAGCGCGGACTTCC 442046 Query 1628503 TCCTTGCCGTGGTTCTTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCC 1628562 |||||||||||||||||| |||| || || | || | | ||||||||||| |||||| Sbjct 442047 TCCTTGCCGTGGTTCTTTCTGAGATCAAGGAATTCAAAGACATCGGCGTGCCAGGGCTCC 442106 Query 1628563 AGGTAGCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 1628600 |||||| ||| ||||||||| |||||| |||||| Sbjct 442107 AGGTAGATGGCGAAGGCGCCCGGTCGCTTGTTGCCGCC 442144 Score = 111 bits (122), Expect = 2e-18 Identities = 331/504 (66%), Gaps = 14/504 (3%) Strand=Plus/Plus Query 1626981 CTGGTCGACGGTAAACTGGATGGCGTCGGCGGCGGGCCTG-GTGCGCAGATAGTACATGC 1627039 |||||| ||||| |||||||||| | | ||||||| | || ||||||| |||||||||| Sbjct 440744 CTGGTCAACGGTGAACTGGATGGGGGCCGCGGCGG-CTTGCGTGCGCAAGTAGTACATGC 440802 Query 1627040 CGGTCTTGAGGCCGCGGCGCCACGCGTAGGCGTGCATCGACGTGATGC-GCTCGGGCGTC 1627098 | |||||||| || | |||| || ||||||||||||||| || | | || Sbjct 440803 CAGTCTTGAGACCCAGCTTCCACCCGGCAAAGTGCATCGACGTGATCTTGCCCATG-GTT 440861 Query 1627099 GCGTCGGCGCAGTACAGGTTGAGCGACTGGCTCTGGTCGACATAGGGCGCGCGATCGGCC 1627158 | ||| || | |||||| |||||| |||||||| | ||| |||| ||||| Sbjct 440862 GGGTCCTTCATGTGAATGTTGAGAGACTGGGACTGGTCGATAAAGGCACCGCGGTCGGCG 440921 Query 1627159 GCCATGTCGATGG--TGACCCGGTTGGGCACCTCCCACACGGTCTTGAAGATGGCCTTGA 1627216 ||||| | | |||| | | | | ||||| || |||||| | | ||||| | Sbjct 440922 GCCATCTGCACCACATGACGCTGC--GAAATTTCCCAGACCGTCTTGTACAGAGCCTTTA 440979 Query 1627217 GGTCGGGCGGCACCTCGTCGTCGCCAAAGCCCTGCACCGAGCCGTGCGCCGCGACGAGCC 1627276 ||| || | | | | | | ||| | |||||||| | | || | || | Sbjct 440980 CCTCGCCGGGAATGTTGGGG------ATGTTCTGGATCGAGCCGTTCTCGGCAATGATGC 441033 Query 1627277 TGTCGCGAAAGTCGGGCGTCCACAGGCCGCGCGCCATCAGGCGCTTGACCAGGTGGCGGT 1627336 | | | || | |||||| || | | || ||||| || ||| Sbjct 441034 GATTCTTCATGGCGTCTGACCACAGACCCATGTCGACGAGATCCTTGAGAAGCCATGGGT 441093 Query 1627337 TGACCACGGTAAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGTTGGTGATGACCT 1627396 |||| || || ||||||| || ||||| ||| ||| |||||| ||| | || Sbjct 441094 TGACGACCTGGAACTCGCCCGCCAGGACGCGTCGCTGGTAAATGTTGGACGTGTAGGGCT 441153 Query 1627397 CGCACGCCTCGGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGA 1627456 || | |||| |||||||||| ||||||||||| | |||||||||||| |||| | | Sbjct 441154 CGAAGCACTCGTTGTTGCCCAGAATCTGCGACGTGGACGCCGTGGGCATGGGCGCGAGCA 441213 Query 1627457 GGAGCGAGTTGCGCAGGCCGTGCT 1627480 | ||||||||||| | ||||||| Sbjct 441214 GCAGCGAGTTGCGAATCCCGTGCT 441237 >seq3 Length=991023 Score = 156 bits (172), Expect = 5e-32 Identities = 192/263 (73%), Gaps = 6/263 (2%) Strand=Plus/Minus Query 509034 CGCCCGAGAGCCGCGGCTTTGTGCGCAACTCGTACGAGCGCGGCCTCAACTCGCGCGAGA 509093 |||||||| ||||||||| || ||||||||| ||||||||| | || |||| Sbjct 312344 CGCCCGAGGCCCGCGGCTTCGTCGAGAACTCGTACCTGCGCGGCCTGACGCCGACCGAGT 312285 Query 509094 TGTTTCTGCACATGATCGGCGGGCGCGAGGGCCTCGTCGACACGGCCGTCAAGACGGCCG 509153 | || | ||| || | ||| |||||||||||| |||||||||||||||||||||||| Sbjct 312284 TCTTCTTCCACGCCATGGCCGGTCGCGAGGGCCTCATCGACACGGCCGTCAAGACGGCCG 312225 Query 509154 AGACGGGCTACATCCAGCGCCGGTGCATCAAGTCGATGGAGAGCCTGCAGATCAAGCG-- 509211 ||||||||||||||||||| ||| ||||| || | ||| ||| || | ||| Sbjct 312224 AGACGGGCTACATCCAGCGGCGGCTGGTCAAGGCGCTCGAGGACCT---GAGCGCGCGGT 312168 Query 509212 -CGGCGGCCTCGTGCGCAACGCCAACGGCGACATCGTCCAGTTTGCCTATGGCGGCGACG 509270 || ||| ||||||||| | ||||||||| |||||||| ||| |||| |||| Sbjct 312167 ACGACGGGACGGTGCGCAACTCGCTCGGCGACATTGTCCAGTTCCTCTACGGCGAGGACG 312108 Query 509271 GNNNNNNCGCCACCTACATCGAG 509293 | ||||| | ||||||| Sbjct 312107 GCCTGGACGCCATGTGCATCGAG 312085 Score = 129 bits (142), Expect = 7e-24 Identities = 168/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 507579 CGCTCCAGATCGGGTGGTCGGTCGAGCGCCACCTGCGCGCGGGCGACGCCGTGGTGATGA 507638 ||||| || ||| ||| ||| ||||| |||||| | |||||| | | | | | Sbjct 313460 CGCTCGAGTACGGCTGGAAGGTGGAGCGGCACCTGATGGACGGCGACTACATCATCTTCA 313401 Query 507639 ACCGGCAGCCGTCGCTGCACATGGGCTCCATGCTCATGCACAAGGTGGTGCCCATGCCCG 507698 |||||||||| |||||||||| || |||||| | ||| || |||||| | Sbjct 313400 ACCGGCAGCCCTCGCTGCACAAGGAGTCCATGATGGGCCACCGCGTCCGCGTCATGCC-G 313342 Query 507699 GGCGC-ACCATGCGATTCAACCTGGCCGTCACGGGCACCTACAACGCCGACTTTGACGGC 507757 | | || | || | |||||| | |||||| |||||||||||||||||||||| Sbjct 313341 TACTCGACGTTTCGCCTGAACCTGTCGGTCACGTCGCCCTACAACGCCGACTTTGACGGA 313282 Query 507758 GACGAGATGAACCTGCACGTGCCCCAGTCCGAGACGGCGCGCGCCGAGGT 507807 ||||||||||||||||||||||||||| |||| | ||||||||||||| Sbjct 313281 GACGAGATGAACCTGCACGTGCCCCAGAGCGAGGAGACGCGCGCCGAGGT 313232 Score = 125 bits (138), Expect = 9e-23 Identities = 252/374 (67%), Gaps = 6/374 (2%) Strand=Plus/Minus Query 511949 GGCGTGGACGCCTCGCGCAGTCACACCAACGACATCAACCGCGTGGCCGCCGTGCTGGGC 512008 ||||||||| || | |||| ||||||||||| || | | | || || | ||| Sbjct 310737 GGCGTGGACCCCACCCGCACCTACACCAACGACCTCTGGCAGATTGTCGAGGTCTTTGGC 310678 Query 512009 ATCGAGGCCGCCGTGGCCGTGCTCTTTTCCGAGATCAAGGCCGTCATCTCCTTTGACGGC 512068 ||||||||||| | ||| ||| | ||| | | ||| | ||||||||||| Sbjct 310677 ATCGAGGCCGCGCGGTCCGCGCTGGTCAAGGAGCTGACCAACGTGCTGGCCTTTGACGGC 310618 Query 512069 ACCTACGTCAACGACCGCCACTTTGCGCTGGCCACCGACACCATGTGCTGCCGCGGATCG 512128 ||||||||||| |||||||| | || ||| | |||| |||| | ||| || Sbjct 310617 TCCTACGTCAACCACCGCCACATCGCCCTGCTCGTCGACGTCATGACGTACCGGGGCAGC 310558 Query 512129 GTGGTGGCCGTCACGCGCCACGGCTTCAACCGCGCCGACCACGGCTTCCTGTCGCGGGCC 512188 | ||||||||| || |||||| |||||||||||||| || |||| ||| | Sbjct 310557 ATCTCGGCCGTCACCCGGCACGGCATCAACCGCGCCGACACGGGGGCCCTGATGCGCTGC 310498 Query 512189 TCTTTCGAAGAGACCGTCGACATCCTCTTTGACGCGGCGGCCTTTGCCGAGACCGACAAG 512248 || ||||| ||||| ||||| |||||| | || || |||||| | ||| ||| | Sbjct 310497 TCCTTCGAGGAGACGGTCGAGATCCTCCTCGAGGCCGCGGCCACCGGGGAGCTTGACGAC 310438 Query 512249 ATCACCGACGGCTCGGTGACCGAGCCCATCATCCTGGGCCAGACGGCGCCCATCGGCACG 512308 | || | ||||| | || |||| ||||||||| ||||||||| ||||| Sbjct 310437 TGCCGCGGCATCTCGGAAAACG------TCATGCTGGGCCAGCTGGCGCCCATGGGCACC 310384 Query 512309 GCCATCTCGGACGT 512322 | || || ||||| Sbjct 310383 GGCAACTTTGACGT 310370 >seq36 Length=363581 Score = 149 bits (164), Expect = 8e-30 Identities = 125/151 (83%), Gaps = 2/151 (1%) Strand=Plus/Plus Query 19045 AGGACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCG 19104 ||||||||||||| ||||||||||||||||| ||||||||| || | || ||||||| Sbjct 35645 AGGACAGCATCGGAGGCACGGTGACGTGCGTCGTTCGCAACGTCCCCACCGGACTCGGCG 35704 Query 19105 AG-CCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCC 19163 || ||||| |||| |||| | ||||| |||||||||| | |||||| ||||||||| Sbjct 35705 AGCCCGTGTTTTG-CAAGCTGGAGGCGACGCTCGCCCAGGGCATGCTCAGCATCCCGGCC 35763 Query 19164 ACCAAGGGATTCGAGATTGGCAGCGGGTTTG 19194 |||||||||||||| || ||| |||||||| Sbjct 35764 ACCAAGGGATTCGAAATCGGCTCCGGGTTTG 35794 >seq66 Length=172015 Score = 131 bits (144), Expect = 2e-24 Identities = 92/105 (88%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 1592190 CCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGA 1592249 ||||||||||||| ||||||||| ||||||| | || ||||| |||| |||||||||| Sbjct 83133 CCAACTACCTCGATATCAAGCCTTTGCTCGACGTGGGCTGCAAAACTGTCGCCAACATGA 83192 Query 1592250 TCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294 ||||||||||||| |||||||| ||||||||||| || ||||||| Sbjct 83193 TCAAGGGCAAGTCCCCCGAGGAAATCCGCAAGACTTTCAACATCA 83237 >seq1 Length=2302571 Score = 109 bits (120), Expect = 7e-18 Identities = 150/203 (74%), Gaps = 15/203 (7%) Strand=Plus/Minus Query 869174 TGCGAACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCG 869233 ||| |||| ||||| || || | |||||| |||| || ||||||||||||||| Sbjct 1624950 TGCAAACCCTCGTCACGGGATATGAGTTCGTTTGAGAAGGTAAGCCCGGGCATGAGGCCG 1624891 Query 869234 CGCTTCTTGAGCCAAAAGATGG-CGCAGAAACTGCCCGA--GAAAAAGATGCCCTCGACG 869290 |||||||||||||||||||||| ||| ||| ||| | | ||| |||||||||||||| Sbjct 1624890 CGCTTCTTGAGCCAAAAGATGGACGC-GAA--TGCACCACTGAAGAAGATGCCCTCGACA 1624834 Query 869291 GCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTG---TTGATCCAC 869347 ||||| ||| | | | || | ||| ||| | || ||||||| | |||||| Sbjct 1624833 GCGGCGAAGGCAACCAATCGTTGGGCGAAG----CTAG--ACTCCTTGTCTTGGATCCAG 1624780 Query 869348 TTCATCGCCCAGTCGGCCTTTTT 869370 || ||||||||||||||||| Sbjct 1624779 CGGATGGCCCAGTCGGCCTTTTT 1624757 Score = 107 bits (118), Expect = 2e-17 Identities = 169/242 (70%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| || || || ||| ||| ||||||||||||||||| | || ||||| Sbjct 1625259 GCCTTCTGGTATTCACCAACTCGCTTCTCAAAAAAGTTGGTCTTGCCACCCAGGGAGATA 1625200 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 |||||| | ||||| || | |||||||| |||||| ||||| | | Sbjct 1625199 TTCTCCATAAAATCAAACGGATTCGCTGTCTTGTACACCTTTTCATTCCCGAGAGCAACC 1625140 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 | |||||||||||| || || |||||||| || ||| || || ||||||||||| Sbjct 1625139 AACAGGCGGTCGGCAACGAATTCGATGTATTGCTTCATCAGTGTGGAGTTCATGCCGAGA 1625080 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 || || |||||| | ||| ||| || |||| ||| || |||||| ||| |||| Sbjct 1625079 AGAGCGCACGGCAGAGCCTCCGTCAGGAAATCTTGCTCAATGGTGACGGCATCGGTGATG 1625020 Query 868931 AT 868932 || Sbjct 1625019 AT 1625018 >seq48 Length=244570 Score = 100 bits (110), Expect = 3e-15 Identities = 169/240 (70%), Gaps = 10/240 (4%) Strand=Plus/Minus Query 733083 CCCG-AGTTGGGCGACAAACTGTCGTCGCGCCACGGCCAAAAGGGCACCGTGGGCAGCGT 733141 |||| || | |||||||| | |||| || ||||| ||||||||||| | || || Sbjct 120380 CCCGCAGATTGGCGACAAGTTTGCGTCTCGTCACGGACAAAAGGGCACGATTGGT---GT 120324 Query 733142 G-CGCTCCACC--GAGGACATGCCCTGGTCGCCGCGCGGCGGCGCCACGCCCGACATCGT 733198 | || || | ||||||||||||| | | | | || | |||||| |||||| | Sbjct 120323 GACGTACCGGCAGGAGGACATGCCCTTTACACGG---GAAGGGGTCACGCCAGACATCAT 120267 Query 733199 GATCAACCCGCACGCCATCCCGTCGCGCATGACCATGGGCAAGATGCTCGAGGCCCTCCT 733258 ||||||||||||||||| |||||||| ||||| || | | | || ||||| ||| || Sbjct 120266 CATCAACCCGCACGCCATTCCGTCGCGAATGACAATTGCCCACTTGATCGAGTGCCTGCT 120207 Query 733259 GGGCAAGGTGGCCTGCCGCGAGGGCTACATCGGCGACGGCACGCCCTTTGGCGGCGTCAC 733318 |||||||| || | |||||| ||||| | |||||||||| || ||| || Sbjct 120206 AAGCAAGGTGTCCACGCTGGAGGGCATGGAGGGCGATGCCACGCCCTTTACCGACGTGAC 120147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107102352957333