Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09]
449 sequences; 39,397,682 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq2 170 2e-36
seq3 156 5e-32
seq36 149 8e-30
seq66 131 2e-24
seq1 109 7e-18
seq48 100 3e-15
>seq2
Length=1075658
Score = 170 bits (188), Expect = 2e-36
Identities = 225/312 (72%), Gaps = 0/312 (0%)
Strand=Plus/Plus
Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125
||||||||||| | || |||| ||| ||||| || |||||||| |||| |||||| ||
Sbjct 442146 TGGTCGACGTATCTGGCAGTGTTGTTGAAGACTCGCAGCATGGGAACGACGCCGTTCGAG 442205
Query 1630126 TCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCG 1630185
|||||||||||| || | ||||| |||| || || | ||| || | ||||
Sbjct 442206 GTGCCGTTGGTGCCGGCAATGTAGGATCCGGTAGCACGAATGCGGTGGACGTTCAGGCCG 442265
Query 1630186 ATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCG 1630245
|| ||||||||| || || || | ||||| ||||| ||||||||||||||||||
Sbjct 442266 ATACCGCCGGCCATTTTAGAAATCATGGCGCAAGTCTTGAGAGTGTCGTAGATGCCCTCG 442325
Query 1630246 ATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCCG 1630305
|| ||| |||||||||| ||||| |||||||| || || || | ||||||
Sbjct 442326 ATGCTGTCTTCCTTCATGTCGACGAGGAAGCACGAGGAAAGCTGACACTGAGGCGTGCCC 442385
Query 1630306 GCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGTG 1630365
||||||||||| || || | || |||||| || | | |||||| || ||||||
Sbjct 442386 GCGTTGAAGAGGGTAGGTGAGGCGTGGGTGAAGAATTTACTGGACATGAGGTTGTAGGTT 442445
Query 1630366 GCGAGCACGCGC 1630377
| || ||||||
Sbjct 442446 TCCAGGACGCGC 442457
Score = 127 bits (140), Expect = 2e-23
Identities = 338/518 (65%), Gaps = 14/518 (3%)
Strand=Plus/Plus
Query 1628090 GGTCGGCGACGACAAACTTGGGCAGGGCCACGCTGGAAAGGTTGCAAGTCGCCACTTCCG 1628149
||||| | | ||||| ||||||||| | | || ||||||||| || || ||
Sbjct 441634 GGTCGTAGTCCACAAAGGCGGGCAGGGCAAGGGAGGCAAGGTTGCAGACGGCAACCTCGT 441693
Query 1628150 TGGGCGACGAAAACTGGACGATCTCGGTGCACAGGTTGGC-CGACGTCGTCGTACCCAGG 1628208
||| | ||| ||| || ||||||||||| ||||||| | || | || |||| |
Sbjct 441694 CGGGGGCCGAGTACTCGATAATCTCGGTGCAGAGGTTGGAGCTGCGAA-TGGTTCCCAAG 441752
Query 1628209 TTCTGCTGGTTGGTGGTCAGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTC 1628268
|||| ||||||| | || |||| ||||||| ||||| |||| ||| |||
Sbjct 441753 TTCTTCTGGTTGCTCTTCCTGTTGCAATGATCCTTGTACAGCATAAAGGGGTTGCCAGTC 441812
Query 1628269 TCGATCTGCGCCGCGACGATGGCCGACCAGA---TCTGGCGCGCGGGCACGACAGTCC-G 1628324
||| |||| ||| ||| ||| | |||| | ||||| |||||| | ||| |
Sbjct 441813 TCGGTCTGAGCCTCGAGGATCGAGTACCACAGCTTCTGG-GCGCGG-----ATTGTCTTG 441866
Query 1628325 CG--CGCGGCCCTNNNNNNNNNNNNNNNNNNNNNNNNNNTCAAAGGCCGCGCCGTAGCAC 1628382
|| | ||||| | ||||| | ||||||||||
Sbjct 441867 CGGCCACGGCCTTCGCGCTCGTACTTTTCATACAAAGCCTCAAACTCGTCGCCGTAGCAG 441926
Query 1628383 TCGTGCAGGCCGGGCGCCTCGGACGGACAAAAGAGCGACCAGTCGCCACCGGTCACCGCG 1628442
||| || || || ||| || || | ||| | |||||||||| || | |
Sbjct 441927 TCGGCGAGCCCAGGGCATTCGTTGGGGCACATGAGGGTCCAGTCGCCATTCTTCTCGACA 441986
Query 1628443 CGGCGCATAAAGAGGTCACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCC 1628502
|| ||| |||||||| ||||||| || ||||||||||| || ||| |||
Sbjct 441987 CGCTTCATGAAGAGGTCGGGGATCCACAGCGCAAGGAAGAGGTCGCGAGCGCGGACTTCC 442046
Query 1628503 TCCTTGCCGTGGTTCTTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCC 1628562
|||||||||||||||||| |||| || || | || | | ||||||||||| ||||||
Sbjct 442047 TCCTTGCCGTGGTTCTTTCTGAGATCAAGGAATTCAAAGACATCGGCGTGCCAGGGCTCC 442106
Query 1628563 AGGTAGCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 1628600
|||||| ||| ||||||||| |||||| ||||||
Sbjct 442107 AGGTAGATGGCGAAGGCGCCCGGTCGCTTGTTGCCGCC 442144
Score = 111 bits (122), Expect = 2e-18
Identities = 331/504 (66%), Gaps = 14/504 (3%)
Strand=Plus/Plus
Query 1626981 CTGGTCGACGGTAAACTGGATGGCGTCGGCGGCGGGCCTG-GTGCGCAGATAGTACATGC 1627039
|||||| ||||| |||||||||| | | ||||||| | || ||||||| ||||||||||
Sbjct 440744 CTGGTCAACGGTGAACTGGATGGGGGCCGCGGCGG-CTTGCGTGCGCAAGTAGTACATGC 440802
Query 1627040 CGGTCTTGAGGCCGCGGCGCCACGCGTAGGCGTGCATCGACGTGATGC-GCTCGGGCGTC 1627098
| |||||||| || | |||| || ||||||||||||||| || | | ||
Sbjct 440803 CAGTCTTGAGACCCAGCTTCCACCCGGCAAAGTGCATCGACGTGATCTTGCCCATG-GTT 440861
Query 1627099 GCGTCGGCGCAGTACAGGTTGAGCGACTGGCTCTGGTCGACATAGGGCGCGCGATCGGCC 1627158
| ||| || | |||||| |||||| |||||||| | ||| |||| |||||
Sbjct 440862 GGGTCCTTCATGTGAATGTTGAGAGACTGGGACTGGTCGATAAAGGCACCGCGGTCGGCG 440921
Query 1627159 GCCATGTCGATGG--TGACCCGGTTGGGCACCTCCCACACGGTCTTGAAGATGGCCTTGA 1627216
||||| | | |||| | | | | ||||| || |||||| | | ||||| |
Sbjct 440922 GCCATCTGCACCACATGACGCTGC--GAAATTTCCCAGACCGTCTTGTACAGAGCCTTTA 440979
Query 1627217 GGTCGGGCGGCACCTCGTCGTCGCCAAAGCCCTGCACCGAGCCGTGCGCCGCGACGAGCC 1627276
||| || | | | | | | ||| | |||||||| | | || | || |
Sbjct 440980 CCTCGCCGGGAATGTTGGGG------ATGTTCTGGATCGAGCCGTTCTCGGCAATGATGC 441033
Query 1627277 TGTCGCGAAAGTCGGGCGTCCACAGGCCGCGCGCCATCAGGCGCTTGACCAGGTGGCGGT 1627336
| | | || | |||||| || | | || ||||| || |||
Sbjct 441034 GATTCTTCATGGCGTCTGACCACAGACCCATGTCGACGAGATCCTTGAGAAGCCATGGGT 441093
Query 1627337 TGACCACGGTAAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGTTGGTGATGACCT 1627396
|||| || || ||||||| || ||||| ||| ||| |||||| ||| | ||
Sbjct 441094 TGACGACCTGGAACTCGCCCGCCAGGACGCGTCGCTGGTAAATGTTGGACGTGTAGGGCT 441153
Query 1627397 CGCACGCCTCGGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGA 1627456
|| | |||| |||||||||| ||||||||||| | |||||||||||| |||| | |
Sbjct 441154 CGAAGCACTCGTTGTTGCCCAGAATCTGCGACGTGGACGCCGTGGGCATGGGCGCGAGCA 441213
Query 1627457 GGAGCGAGTTGCGCAGGCCGTGCT 1627480
| ||||||||||| | |||||||
Sbjct 441214 GCAGCGAGTTGCGAATCCCGTGCT 441237
>seq3
Length=991023
Score = 156 bits (172), Expect = 5e-32
Identities = 192/263 (73%), Gaps = 6/263 (2%)
Strand=Plus/Minus
Query 509034 CGCCCGAGAGCCGCGGCTTTGTGCGCAACTCGTACGAGCGCGGCCTCAACTCGCGCGAGA 509093
|||||||| ||||||||| || ||||||||| ||||||||| | || ||||
Sbjct 312344 CGCCCGAGGCCCGCGGCTTCGTCGAGAACTCGTACCTGCGCGGCCTGACGCCGACCGAGT 312285
Query 509094 TGTTTCTGCACATGATCGGCGGGCGCGAGGGCCTCGTCGACACGGCCGTCAAGACGGCCG 509153
| || | ||| || | ||| |||||||||||| ||||||||||||||||||||||||
Sbjct 312284 TCTTCTTCCACGCCATGGCCGGTCGCGAGGGCCTCATCGACACGGCCGTCAAGACGGCCG 312225
Query 509154 AGACGGGCTACATCCAGCGCCGGTGCATCAAGTCGATGGAGAGCCTGCAGATCAAGCG-- 509211
||||||||||||||||||| ||| ||||| || | ||| ||| || | |||
Sbjct 312224 AGACGGGCTACATCCAGCGGCGGCTGGTCAAGGCGCTCGAGGACCT---GAGCGCGCGGT 312168
Query 509212 -CGGCGGCCTCGTGCGCAACGCCAACGGCGACATCGTCCAGTTTGCCTATGGCGGCGACG 509270
|| ||| ||||||||| | ||||||||| |||||||| ||| |||| ||||
Sbjct 312167 ACGACGGGACGGTGCGCAACTCGCTCGGCGACATTGTCCAGTTCCTCTACGGCGAGGACG 312108
Query 509271 GNNNNNNCGCCACCTACATCGAG 509293
| ||||| | |||||||
Sbjct 312107 GCCTGGACGCCATGTGCATCGAG 312085
Score = 129 bits (142), Expect = 7e-24
Identities = 168/230 (73%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 507579 CGCTCCAGATCGGGTGGTCGGTCGAGCGCCACCTGCGCGCGGGCGACGCCGTGGTGATGA 507638
||||| || ||| ||| ||| ||||| |||||| | |||||| | | | | |
Sbjct 313460 CGCTCGAGTACGGCTGGAAGGTGGAGCGGCACCTGATGGACGGCGACTACATCATCTTCA 313401
Query 507639 ACCGGCAGCCGTCGCTGCACATGGGCTCCATGCTCATGCACAAGGTGGTGCCCATGCCCG 507698
|||||||||| |||||||||| || |||||| | ||| || |||||| |
Sbjct 313400 ACCGGCAGCCCTCGCTGCACAAGGAGTCCATGATGGGCCACCGCGTCCGCGTCATGCC-G 313342
Query 507699 GGCGC-ACCATGCGATTCAACCTGGCCGTCACGGGCACCTACAACGCCGACTTTGACGGC 507757
| | || | || | |||||| | |||||| ||||||||||||||||||||||
Sbjct 313341 TACTCGACGTTTCGCCTGAACCTGTCGGTCACGTCGCCCTACAACGCCGACTTTGACGGA 313282
Query 507758 GACGAGATGAACCTGCACGTGCCCCAGTCCGAGACGGCGCGCGCCGAGGT 507807
||||||||||||||||||||||||||| |||| | |||||||||||||
Sbjct 313281 GACGAGATGAACCTGCACGTGCCCCAGAGCGAGGAGACGCGCGCCGAGGT 313232
Score = 125 bits (138), Expect = 9e-23
Identities = 252/374 (67%), Gaps = 6/374 (2%)
Strand=Plus/Minus
Query 511949 GGCGTGGACGCCTCGCGCAGTCACACCAACGACATCAACCGCGTGGCCGCCGTGCTGGGC 512008
||||||||| || | |||| ||||||||||| || | | | || || | |||
Sbjct 310737 GGCGTGGACCCCACCCGCACCTACACCAACGACCTCTGGCAGATTGTCGAGGTCTTTGGC 310678
Query 512009 ATCGAGGCCGCCGTGGCCGTGCTCTTTTCCGAGATCAAGGCCGTCATCTCCTTTGACGGC 512068
||||||||||| | ||| ||| | ||| | | ||| | |||||||||||
Sbjct 310677 ATCGAGGCCGCGCGGTCCGCGCTGGTCAAGGAGCTGACCAACGTGCTGGCCTTTGACGGC 310618
Query 512069 ACCTACGTCAACGACCGCCACTTTGCGCTGGCCACCGACACCATGTGCTGCCGCGGATCG 512128
||||||||||| |||||||| | || ||| | |||| |||| | ||| ||
Sbjct 310617 TCCTACGTCAACCACCGCCACATCGCCCTGCTCGTCGACGTCATGACGTACCGGGGCAGC 310558
Query 512129 GTGGTGGCCGTCACGCGCCACGGCTTCAACCGCGCCGACCACGGCTTCCTGTCGCGGGCC 512188
| ||||||||| || |||||| |||||||||||||| || |||| ||| |
Sbjct 310557 ATCTCGGCCGTCACCCGGCACGGCATCAACCGCGCCGACACGGGGGCCCTGATGCGCTGC 310498
Query 512189 TCTTTCGAAGAGACCGTCGACATCCTCTTTGACGCGGCGGCCTTTGCCGAGACCGACAAG 512248
|| ||||| ||||| ||||| |||||| | || || |||||| | ||| ||| |
Sbjct 310497 TCCTTCGAGGAGACGGTCGAGATCCTCCTCGAGGCCGCGGCCACCGGGGAGCTTGACGAC 310438
Query 512249 ATCACCGACGGCTCGGTGACCGAGCCCATCATCCTGGGCCAGACGGCGCCCATCGGCACG 512308
| || | ||||| | || |||| ||||||||| ||||||||| |||||
Sbjct 310437 TGCCGCGGCATCTCGGAAAACG------TCATGCTGGGCCAGCTGGCGCCCATGGGCACC 310384
Query 512309 GCCATCTCGGACGT 512322
| || || |||||
Sbjct 310383 GGCAACTTTGACGT 310370
>seq36
Length=363581
Score = 149 bits (164), Expect = 8e-30
Identities = 125/151 (83%), Gaps = 2/151 (1%)
Strand=Plus/Plus
Query 19045 AGGACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCG 19104
||||||||||||| ||||||||||||||||| ||||||||| || | || |||||||
Sbjct 35645 AGGACAGCATCGGAGGCACGGTGACGTGCGTCGTTCGCAACGTCCCCACCGGACTCGGCG 35704
Query 19105 AG-CCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCC 19163
|| ||||| |||| |||| | ||||| |||||||||| | |||||| |||||||||
Sbjct 35705 AGCCCGTGTTTTG-CAAGCTGGAGGCGACGCTCGCCCAGGGCATGCTCAGCATCCCGGCC 35763
Query 19164 ACCAAGGGATTCGAGATTGGCAGCGGGTTTG 19194
|||||||||||||| || ||| ||||||||
Sbjct 35764 ACCAAGGGATTCGAAATCGGCTCCGGGTTTG 35794
>seq66
Length=172015
Score = 131 bits (144), Expect = 2e-24
Identities = 92/105 (88%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 1592190 CCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGA 1592249
||||||||||||| ||||||||| ||||||| | || ||||| |||| ||||||||||
Sbjct 83133 CCAACTACCTCGATATCAAGCCTTTGCTCGACGTGGGCTGCAAAACTGTCGCCAACATGA 83192
Query 1592250 TCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294
||||||||||||| |||||||| ||||||||||| || |||||||
Sbjct 83193 TCAAGGGCAAGTCCCCCGAGGAAATCCGCAAGACTTTCAACATCA 83237
>seq1
Length=2302571
Score = 109 bits (120), Expect = 7e-18
Identities = 150/203 (74%), Gaps = 15/203 (7%)
Strand=Plus/Minus
Query 869174 TGCGAACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCG 869233
||| |||| ||||| || || | |||||| |||| || |||||||||||||||
Sbjct 1624950 TGCAAACCCTCGTCACGGGATATGAGTTCGTTTGAGAAGGTAAGCCCGGGCATGAGGCCG 1624891
Query 869234 CGCTTCTTGAGCCAAAAGATGG-CGCAGAAACTGCCCGA--GAAAAAGATGCCCTCGACG 869290
|||||||||||||||||||||| ||| ||| ||| | | ||| ||||||||||||||
Sbjct 1624890 CGCTTCTTGAGCCAAAAGATGGACGC-GAA--TGCACCACTGAAGAAGATGCCCTCGACA 1624834
Query 869291 GCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTG---TTGATCCAC 869347
||||| ||| | | | || | ||| ||| | || ||||||| | ||||||
Sbjct 1624833 GCGGCGAAGGCAACCAATCGTTGGGCGAAG----CTAG--ACTCCTTGTCTTGGATCCAG 1624780
Query 869348 TTCATCGCCCAGTCGGCCTTTTT 869370
|| |||||||||||||||||
Sbjct 1624779 CGGATGGCCCAGTCGGCCTTTTT 1624757
Score = 107 bits (118), Expect = 2e-17
Identities = 169/242 (70%), Gaps = 0/242 (0%)
Strand=Plus/Minus
Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750
||||| ||| || || || ||| ||| ||||||||||||||||| | || |||||
Sbjct 1625259 GCCTTCTGGTATTCACCAACTCGCTTCTCAAAAAAGTTGGTCTTGCCACCCAGGGAGATA 1625200
Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810
|||||| | ||||| || | |||||||| |||||| ||||| | |
Sbjct 1625199 TTCTCCATAAAATCAAACGGATTCGCTGTCTTGTACACCTTTTCATTCCCGAGAGCAACC 1625140
Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870
| |||||||||||| || || |||||||| || ||| || || |||||||||||
Sbjct 1625139 AACAGGCGGTCGGCAACGAATTCGATGTATTGCTTCATCAGTGTGGAGTTCATGCCGAGA 1625080
Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930
|| || |||||| | ||| ||| || |||| ||| || |||||| ||| ||||
Sbjct 1625079 AGAGCGCACGGCAGAGCCTCCGTCAGGAAATCTTGCTCAATGGTGACGGCATCGGTGATG 1625020
Query 868931 AT 868932
||
Sbjct 1625019 AT 1625018
>seq48
Length=244570
Score = 100 bits (110), Expect = 3e-15
Identities = 169/240 (70%), Gaps = 10/240 (4%)
Strand=Plus/Minus
Query 733083 CCCG-AGTTGGGCGACAAACTGTCGTCGCGCCACGGCCAAAAGGGCACCGTGGGCAGCGT 733141
|||| || | |||||||| | |||| || ||||| ||||||||||| | || ||
Sbjct 120380 CCCGCAGATTGGCGACAAGTTTGCGTCTCGTCACGGACAAAAGGGCACGATTGGT---GT 120324
Query 733142 G-CGCTCCACC--GAGGACATGCCCTGGTCGCCGCGCGGCGGCGCCACGCCCGACATCGT 733198
| || || | ||||||||||||| | | | | || | |||||| |||||| |
Sbjct 120323 GACGTACCGGCAGGAGGACATGCCCTTTACACGG---GAAGGGGTCACGCCAGACATCAT 120267
Query 733199 GATCAACCCGCACGCCATCCCGTCGCGCATGACCATGGGCAAGATGCTCGAGGCCCTCCT 733258
||||||||||||||||| |||||||| ||||| || | | | || ||||| ||| ||
Sbjct 120266 CATCAACCCGCACGCCATTCCGTCGCGAATGACAATTGCCCACTTGATCGAGTGCCTGCT 120207
Query 733259 GGGCAAGGTGGCCTGCCGCGAGGGCTACATCGGCGACGGCACGCCCTTTGGCGGCGTCAC 733318
|||||||| || | |||||| ||||| | |||||||||| || ||| ||
Sbjct 120206 AAGCAAGGTGTCCACGCTGGAGGGCATGGAGGGCGATGCCACGCCCTTTACCGACGTGAC 120147
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6107102352957333
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