Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09] 449 sequences; 39,397,682 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq3 145 1e-28 seq2 123 4e-22 seq66 118 2e-20 seq1 113 7e-19 seq22 95.1 2e-13 seq48 91.5 2e-12 >seq3 Length=991023 Score = 145 bits (160), Expect = 1e-28 Identities = 177/240 (74%), Gaps = 6/240 (3%) Strand=Plus/Minus Query 431020 CGCCCGAGAGCCGCGGCTTTGTGCGCAACTCGTACGAGCGCGGCCTCAACTCGCGCGAGA 431079 |||||||| ||||||||| || ||||||||| ||||||||| | || |||| Sbjct 312344 CGCCCGAGGCCCGCGGCTTCGTCGAGAACTCGTACCTGCGCGGCCTGACGCCGACCGAGT 312285 Query 431080 TGTTTCTGCACATGATCGGCGGGCGCGAGGGTCTCGTCGACACGGCCGTCAAGACGGCCG 431139 | || | ||| || | ||| |||||||| ||| |||||||||||||||||||||||| Sbjct 312284 TCTTCTTCCACGCCATGGCCGGTCGCGAGGGCCTCATCGACACGGCCGTCAAGACGGCCG 312225 Query 431140 AGACGGGCTACATCCAGCGTCGGTGCATCAAATCGATGGAGAGCCTGCAGATCAAGCG-- 431197 ||||||||||||||||||| ||| |||| || | ||| ||| || | ||| Sbjct 312224 AGACGGGCTACATCCAGCGGCGGCTGGTCAAGGCGCTCGAGGACCT---GAGCGCGCGGT 312168 Query 431198 -CGGCGGCCTCGTGCGCAACGCCAACGGCGACATTGTCCAGTTTGCCTATGGCGGCGACG 431256 || ||| ||||||||| | |||||||||||||||||| ||| |||| |||| Sbjct 312167 ACGACGGGACGGTGCGCAACTCGCTCGGCGACATTGTCCAGTTCCTCTACGGCGAGGACG 312108 Score = 125 bits (138), Expect = 1e-22 Identities = 168/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 429508 CGCTCCAGATCGGGTGGACCGTCGAGCGCCACCTGCGCACCGGCGACCCCGTGGTCATGA 429567 ||||| || ||| |||| || ||||| |||||| ||||||| | | || | | Sbjct 313460 CGCTCGAGTACGGCTGGAAGGTGGAGCGGCACCTGATGGACGGCGACTACATCATCTTCA 313401 Query 429568 ACCGGCAGCCGTCGCTCCACATGGGGTCGATGCTCAACCACAAGGTGGTGCCCATGCCCG 429627 |||||||||| ||||| |||| || ||| ||| | |||| || |||||| Sbjct 313400 ACCGGCAGCCCTCGCTGCACAAGGAGTCCATGATGGGCCACCGCGTCCGCGTCATGCCGT 313341 Query 429628 G-TCGCACCTTCCGGCTCAACCTGGCCGTGACGGGCACCTACAACGCCGACTTTGACGGC 429686 ||| || || || || |||||| | || ||| |||||||||||||||||||||| Sbjct 313340 ACTCG-ACGTTTCGCCTGAACCTGTCGGTCACGTCGCCCTACAACGCCGACTTTGACGGA 313282 Query 429687 GACGAGATGAACCTGCACGTGCCCCAGTCGGAGATGGCACGCGCCGAAGTC 429737 ||||||||||||||||||||||||||| ||| | | |||||||| ||| Sbjct 313281 GACGAGATGAACCTGCACGTGCCCCAGAGCGAGGAGACGCGCGCCGAGGTC 313231 Score = 109 bits (120), Expect = 9e-18 Identities = 198/286 (69%), Gaps = 8/286 (3%) Strand=Plus/Minus Query 434025 GGCGTGGACGCCGCACGCAGCCACACCAACGACATCAACCGCGTGGCGGCCGTACTGGGC 434084 ||||||||| || | |||| | ||||||||||| || | | | | || | ||| Sbjct 310737 GGCGTGGACCCCACCCGCACCTACACCAACGACCTCTGGCAGATTGTCGAGGTCTTTGGC 310678 Query 434085 ATCGAAGCGGCCGTCGCTGT--GCTCTTTTCC--GAGATCAAGGCCGTGATCTCCTTTGA 434140 ||||| ||||| ||| || || || || ||| | | |||| | ||||||| Sbjct 310677 ATCGA---GGCCG-CGCGGTCCGCGCTGGTCAAGGAGCTGACCAACGTGCTGGCCTTTGA 310622 Query 434141 CGGCACCTACGTCAACGACCGCCACTTTGCGCTGGCCACCGACACCATGTGCTGTCGCGG 434200 |||| ||||||||||| |||||||| | || ||| | |||| |||| | || || Sbjct 310621 CGGCTCCTACGTCAACCACCGCCACATCGCCCTGCTCGTCGACGTCATGACGTACCGGGG 310562 Query 434201 CTCGGTGGTGGCCGTCACGCGGCACGGCTTCAACCGGGCCGACCACGGCTTTCTGTCGCG 434260 | | ||||||||| ||||||||| ||||||| |||||| || ||| ||| Sbjct 310561 CAGCATCTCGGCCGTCACCCGGCACGGCATCAACCGCGCCGACACGGGGGCCCTGATGCG 310502 Query 434261 GGCCTCCTTTGAGGAGACTGTCGACATCCTCTTTGACGCGGCGGCC 434306 |||||| |||||||| ||||| |||||| | || || |||||| Sbjct 310501 CTGCTCCTTCGAGGAGACGGTCGAGATCCTCCTCGAGGCCGCGGCC 310456 >seq2 Length=1075658 Score = 123 bits (136), Expect = 4e-22 Identities = 328/501 (65%), Gaps = 15/501 (3%) Strand=Plus/Plus Query 2073541 TGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGAC 2073600 |||||||| || | || |||| ||| ||||| || |||||||| || | |||||| || Sbjct 442146 TGGTCGACGTATCTGGCAGTGTTGTTGAAGACTCGCAGCATGGGAACGACGCCGTTCGAG 442205 Query 2073601 TCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCCG 2073660 |||||||||||| || | ||||| || | || || | ||| || | |||| Sbjct 442206 GTGCCGTTGGTGCCGGCAATGTAGGATCCGGTAGCACGAATGCGGTGGACGTTCAGGCCG 442265 Query 2073661 ATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTCG 2073720 || ||||||||| || || || | ||||| | || || || ||||||||||||||| Sbjct 442266 ATACCGCCGGCCATTTTAGAAATCATGGCGCAAGTCTTGAGAGTGTCGTAGATGCCCTCG 442325 Query 2073721 ATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCCG 2073780 || ||| |||||||||| | || |||||||| || || | | |||||| Sbjct 442326 ATGCTGTCTTCCTTCATGTCGACGAGGAAGCACGAGGAAAGCTGACACTGAGGCGTGCCC 442385 Query 2073781 GCATTGAAGAGCGTGGGCGTCGCCGCCGTGTACGACTGTTGGGACATGGCCTCGTAGGTG 2073840 || |||||||| || || | || ||| | | | ||||||| | |||||| Sbjct 442386 GCGTTGAAGAGGGTAGGTGAGGCGTGGGTGAAGAATTTACTGGACATGAGGTTGTAGGTT 442445 Query 2073841 GCGAGCACGCGCGCCAGCGCGTCTTGGACGTCGGCAAACCCATAGTGGCCGATGGCGACG 2073900 | || |||||| | | | || ||| || || ||||| || || Sbjct 442446 TCCAGGACGCGCTCAA-----TGTT----GTC------TCCCCAGATGCCGACAGCAACA 442490 Query 2073901 CGCATGATCATGTACTGGGGTCGCTCGACGACGGCGTCGCGCACCTTGGTCAGGTAGGAC 2073960 ||||||||||||| ||| ||||| ||||| | | || || ||| || || || Sbjct 442491 CGCATGATCATGTGCTGAGGTCGTTCGACAATCTTGCCGTCCAGCTTCAGGAGATACGAT 442550 Query 2073961 CGACGCAGGGTCGCCAGGCCAAAGTACGAGTAGGCCAGGTCGCGCTCGTGGCGGATGGCG 2074020 || ||| ||| | ||||||||| ||| | ||| | ||||| ||||| Sbjct 442551 CGCTCCAGCGTCTTGAAACCAAAGTACTGATAGTTGAAGTCTCTCTCGTAAACAATGGCA 442610 Query 2074021 GCGTCGAGGGCCTCCTTGTGC 2074041 | |||||| |||| |||||| Sbjct 442611 GAGTCGAGCTCCTCTTTGTGC 442631 Score = 122 bits (134), Expect = 1e-21 Identities = 334/503 (66%), Gaps = 14/503 (3%) Strand=Plus/Plus Query 2069251 TGGTCGACGGTAAACTGGATGGCGTTGGCGGCAGGCCGGGTGCGCAGATAGTACATGCCG 2069310 ||||| ||||| |||||||||| | ||||| | | ||||||| ||||||||||| Sbjct 440745 TGGTCAACGGTGAACTGGATGGGGGCCGCGGCGGCTTGCGTGCGCAAGTAGTACATGCCA 440804 Query 2069311 GTCTTGAGGCCGCGACGCCACGCGTAGGCGTGCATCGACGTGATGGACTCGGC-AT--TC 2069367 |||||||| || | |||| || ||||||||||||||| || | | || | Sbjct 440805 GTCTTGAGACCCAGCTTCCACCCGGCAAAGTGCATCGACGTGAT---CTTGCCCATGGTT 440861 Query 2069368 GGGACGGCACAGTAGAGGTTGAGCGACTGGCTCTGGTCGACATAGGGCGCGCGGTCGGCC 2069427 ||| | || | |||||| |||||| |||||||| | ||| |||||||||| Sbjct 440862 GGGTCCTTCATGTGAATGTTGAGAGACTGGGACTGGTCGATAAAGGCACCGCGGTCGGCG 440921 Query 2069428 GCCATGTCGATGGTCACGCGGTTG-GACACCTCCCACACGGTCTTGAACAGGGCCTTGAG 2069486 ||||| | | || | | || || | ||||| || |||||| |||| ||||| | Sbjct 440922 GCCATCTGCACCA-CATGACGCTGCGAAATTTCCCAGACCGTCTTGTACAGAGCCTTTAC 440980 Query 2069487 ATGCGGCGGCACCTCGTCGTCATCAAAGCCCTGCACCGAGCCCTGCGCTGCGATGAGGCG 2069546 | || ||| | | | | || | ||| | |||||| | | | || |||| ||| Sbjct 440981 CT-CGCCGGGAA-TGTTGGGGAT----GTTCTGGATCGAGCCGTTCTCGGCAATGATGCG 441034 Query 2069547 GTCGCGAAAGTCGGGCGTCCACAGGCCGCGCGCCATCATGCGCTCGACCAGGTGGCGGTT 2069606 | | | || | |||||| || | | | || || || |||| Sbjct 441035 ATTCTTCATGGCGTCTGACCACAGACCCATGTCGACGAGATCCTTGAGAAGCCATGGGTT 441094 Query 2069607 GACCACGGTAAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGCTCGTGATGACCTC 2069666 ||| || || ||||||| || ||||| ||| ||| |||||| |||| | ||| Sbjct 441095 GACGACCTGGAACTCGCCCGCCAGGACGCGTCGCTGGTAAATGTTGGACGTGTAGGGCTC 441154 Query 2069667 GCACGCCTCGGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGAG 2069726 | | |||| |||||||||| ||||||||||| | |||||||||||| |||| | || Sbjct 441155 GAAGCACTCGTTGTTGCCCAGAATCTGCGACGTGGACGCCGTGGGCATGGGCGCGAGCAG 441214 Query 2069727 CAGCGAGTTGCGCAGGCCGTACT 2069749 |||||||||||| | |||| || Sbjct 441215 CAGCGAGTTGCGAATCCCGTGCT 441237 Score = 120 bits (132), Expect = 5e-21 Identities = 174/244 (71%), Gaps = 4/244 (2%) Strand=Plus/Plus Query 2071771 GCGTCAAAGGCGGCGCCGTGGCACTCGTGCAGGCCGGGCGCCTCGGACGGGCAAAAGAGC 2071830 || ||||| || |||||| ||| ||| || || || ||| ||||| | ||| Sbjct 441903 GCCTCAAACTCGTCGCCGTAGCAGTCGGCGAGCCCAGGGCATTCGTTGGGGCACATGAGG 441962 Query 2071831 GACCAGTCGCCGCCAGTCACCACGCGGCGCATAAACAGGTCGCACGTCCACAGGCCGTAA 2071890 | ||||||||| || | || || ||| || |||||| ||||||| || || Sbjct 441963 GTCCAGTCGCCATTCTTCTCGACACGCTTCATGAAGAGGTCGGGGATCCACAG--CGCAA 442020 Query 2071891 --AAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTCAGGTCGAGCCAGT 2071948 ||||| ||||| || ||| ||||||||||||||||||||| | || || || | | Sbjct 442021 GGAAGAGGTCGCGAGCGCGGACTTCCTCCTTGCCGTGGTTCTTTCTGAGATCAAGGAATT 442080 Query 2071949 CGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCCTTGCGCTTGCCGC 2072008 | | || ||||||||||| |||||||||||| ||| ||||||||| |||||| || Sbjct 442081 CAAAGACATCGGCGTGCCAGGGCTCCAGGTAGATGGCGAAGGCGCCCGGTCGCTTGTTGC 442140 Query 2072009 CGCC 2072012 |||| Sbjct 442141 CGCC 442144 >seq66 Length=172015 Score = 118 bits (130), Expect = 2e-20 Identities = 89/105 (85%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 2035651 CCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTA 2035710 ||||||||||||| |||||||| | ||||| |||| ||||| || || |||||| | | Sbjct 83133 CCAACTACCTCGATATCAAGCCTTTGCTCGACGTGGGCTGCAAAACTGTCGCCAACATGA 83192 Query 2035711 TCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCA 2035755 ||||||||||||| |||||||| ||||||||||| || ||||||| Sbjct 83193 TCAAGGGCAAGTCCCCCGAGGAAATCCGCAAGACTTTCAACATCA 83237 >seq1 Length=2302571 Score = 113 bits (124), Expect = 7e-19 Identities = 177/251 (71%), Gaps = 2/251 (1%) Strand=Plus/Minus Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950 |||| || ||||| || || || || ||| ||| ||||||||||||||||| | | Sbjct 1625267 TGACACCGGCCTTCTGGTATTCACCAACTCGCTTCTCAAAAAAGTTGGTCTTGCCACCCA 1625208 Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010 | ||||| |||||| | ||||| || || ||| ||| ||| || ||||| Sbjct 1625207 GGGAGATATTCTCCATAAAATCAAACGGATTCGCTGTCTTGTACACCTTTTCATTCCCGA 1625148 Query 794011 GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCA 794070 | | | | |||||||||||| |||||||| ||||| || ||| || | || ||||| Sbjct 1625147 GAGCAACCAACAGGCGGTCGGCAACGAATTCGATGTATTGCTTCATCAGTGTGGAGTTCA 1625088 Query 794071 TGCCGATGAGCGC-CACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCC 794129 |||||| || || ||| ||||| | ||| | | || |||| ||| || |||||| Sbjct 1625087 TGCCGAGAAGAGCGCAC-GGCAGAGCCTCCGTCAGGAAATCTTGCTCAATGGTGACGGCA 1625029 Query 794130 TCGATGATGAT 794140 ||| ||||||| Sbjct 1625028 TCGGTGATGAT 1625018 Score = 87.8 bits (96), Expect = 3e-11 Identities = 73/86 (85%), Gaps = 4/86 (5%) Strand=Plus/Minus Query 794377 AGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGA--GA 794434 || ||||||||||||||||||||||||||||||||||||| || | | ||| | | || Sbjct 1624908 AGCCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGG-AC-GCGAATGCACCACTGA 1624851 Query 794435 AAAAGATGCCCTCGACGGCGGCAAAG 794460 | |||||||||||||| ||||| ||| Sbjct 1624850 AGAAGATGCCCTCGACAGCGGCGAAG 1624825 >seq22 Length=575477 Score = 95.1 bits (104), Expect = 2e-13 Identities = 135/189 (71%), Gaps = 1/189 (1%) Strand=Plus/Plus Query 2019192 GACCT-GCCGCCCGGCCGCCACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTC 2019250 ||||| ||| || |||||||||||| | |||| ||||| || |||||| || | || || Sbjct 398179 GACCTTGCCTCCTGGCCGCCACAAGCTCGTCATACTCGACGAAGCCGACAGCATGACCTC 398238 Query 2019251 GGCGGCCCAGCAGGCCCTCCGATCGACCATGGAAAAGTACACCAACACGACGCGGTTTGC 2019310 | || |||||||||||||| || ||||||| ||| |||||||||| || || || Sbjct 398239 TGGCGCACAGCAGGCCCTCCGCCGAACTATGGAAATATACTCCAACACGACTCGATTCGC 398298 Query 2019311 GCTGGCCTGCAACACGTCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTT 2019370 | || || ||| ||| | | || ||| | || ||| |||||||||||| | Sbjct 398299 ATTCGCGTGTAACCAGTCAAACAAAATTATTGAACCGCTGCAGTCACGTTGCGCCATCCT 398358 Query 2019371 GCGCTTTGC 2019379 || | ||| Sbjct 398359 TCGATATGC 398367 >seq48 Length=244570 Score = 91.5 bits (100), Expect = 2e-12 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 653749 CACGCCCGACATCGTCATCAACCCGCACGCCATCCCGTCGCGCATGACCATGGGCAAGAT 653808 |||||| |||||| ||||||||||||||||||| |||||||| ||||| || | | | | Sbjct 120281 CACGCCAGACATCATCATCAACCCGCACGCCATTCCGTCGCGAATGACAATTGCCCACTT 120222 Query 653809 GATGGAGGCCCTCCTGGGCAAGGTGGCCTGCCGCGAGGGCTACGTGGGCGACGGCACCCC 653868 ||| ||| ||| || |||||||| || | |||||| | |||||| | ||| || Sbjct 120221 GATCGAGTGCCTGCTAAGCAAGGTGTCCACGCTGGAGGGCATGGAGGGCGATGCCACGCC 120162 Query 653869 GTTTGGCGGCGTCACCGT 653886 ||| || ||| || || Sbjct 120161 CTTTACCGACGTGACAGT 120144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916198637822111