Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09] 449 sequences; 39,397,682 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq67 129 4e-25 seq56 129 4e-25 seq13 102 5e-17 >seq67 Length=171618 Score = 129 bits (142), Expect = 4e-25 Identities = 160/217 (74%), Gaps = 8/217 (4%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||| ||| | ||||||||||||||| ||||| ||||| | ||| |||| |||| Sbjct 155701 CAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCATC 155760 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||| || || ||||| ||||| |||||||| | || | ||||||||||| Sbjct 155761 CTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTC 155820 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTA 34940 | || || ||||| || | ||||| || | ||| || || | ||| | Sbjct 155821 CTGGATCTTGGACTTGAC--AT--TGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGA 155876 Query 34941 TGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||||| |||||||||||||| || || |||||||| Sbjct 155877 TGGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 155913 >seq56 Length=194926 Score = 129 bits (142), Expect = 4e-25 Identities = 160/217 (74%), Gaps = 8/217 (4%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || ||||| |||| |||| |||||||| ||||| ||||| | ||| |||| |||| Sbjct 69381 AGAACCAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCATCT 69322 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || || || || || ||||||| || |||||||| |||| | ||||||||||| Sbjct 69321 TCGAGCTGTTTACCAGCAAAGATCAAGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCT 69262 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | ||||| ||||| || | ||||| ||| | ||| || || | ||| || Sbjct 69261 TGAATTTTCGACTTGAC--AT--TGTCGATGGTGTCAGAAGACTCCACCTCGAGGGTGAT 69206 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||||||||| |||||||||||||| ||||| |||||| Sbjct 69205 GGTCTTTCCGGTGAGGGTCTTTACGAAGATTTGCATG 69169 Score = 114 bits (126), Expect = 8e-21 Identities = 157/217 (72%), Gaps = 8/217 (4%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| || || || | |||| |||||||| ||||| ||||| | ||| |||| | || Sbjct 69610 CAGAACGAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTC 69551 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || ||||| || || || ||||||| ||||||||||| |||| | ||||||||||| Sbjct 69550 TTCGAGTTGTTTGCCAGCAAAGATCAAGCGTTGCTGGTCGGGCGGGATGCCCTCCTTGTC 69491 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTA 34940 | ||||| ||||| || | ||||| || | ||| || || | ||| | Sbjct 69490 TTGGATTTTCGCCTTGAC--AT--TGTCGATGGTGTCGGAAGACTCCACCTCCAGGGTGA 69435 Query 34941 TGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||||| || ||||||||||| || ||||||||||| Sbjct 69434 TGGTCTTCCCAGTGAGGGTCTTGACGAAGATCTGCAT 69398 Score = 96.9 bits (106), Expect = 2e-15 Identities = 153/217 (71%), Gaps = 8/217 (4%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||| | || |||||| |||||||| ||||| | |||| | | | |||| Sbjct 70065 AGCACCAGGTGCAACGTCGACTCCTTTTGAATGTTGTAGTCGGCTAGGGTTCTCCCATCC 70006 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| || || ||||| ||||| ||||| || | || | ||||||||||| Sbjct 70005 TCAAGCTGCTTACCAGCAAAGATGAGTCGCTGCTGATCAGGAGGAATGCCCTCCTTGTCT 69946 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | ||||| || || || |||| || ||| | ||| || || | || || Sbjct 69945 TGAATTTTCGACTTCAC--AT--TATCAATGGTATCAGACGACTCCACCTCGAGCGTGAT 69890 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 |||||| || || || ||||| || || ||||||||| Sbjct 69889 GGTCTTCCCGGTCAGCGTCTTGACGAAAATCTGCATG 69853 >seq13 Length=702126 Score = 102 bits (112), Expect = 5e-17 Identities = 131/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847 ||||||||||||| ||||| | ||| | || |||| ||||| ||||| || || |||| Sbjct 289257 CCTTCTGAATGTTGTAGTCGGCCAGGGTTCGGCCATCCTCCAGCTGCTTGCCAGCAAAGA 289198 Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907 ||| || |||||||| | || | ||||||||||| | || || ||||| Sbjct 289197 TCAAACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 289138 Query 34908 CTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAA 34967 | |||| || || |||||| || | || |||||||| ||||| |||||||| |||| Sbjct 289137 CGATCGTGTCGGAGGACTCGACCTCGAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAA 289078 Query 34968 A 34968 | Sbjct 289077 A 289077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325691017747931