Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09]
449 sequences; 39,397,682 total letters
Query= NC_023177.1
Length=124688
Score E
Sequences producing significant alignments: (Bits) Value
seq56 100 2e-16
seq67 91.5 1e-13
>seq56
Length=194926
Score = 100 bits (110), Expect = 2e-16
Identities = 148/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615
||||| ||||| ||||| || | || || || ||||| || |||| |||| |
Sbjct 69854 ATGCAGATTTTCGTCAAGACGCTGACCGGGAAGACCATCACGCTCGAGGTGGAGTCGTCT 69913
Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675
||||| | | | || || || ||| || || || ||| | || ||||||
Sbjct 69914 GATACCATTGATAATGTGAAGTCGAAAATTCAAGACAAGGAGGGCATTCCTCCTGATCAG 69973
Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735
||| |||| || | ||| ||||| ||||| ||||| | | ||| | || |||||||||
Sbjct 69974 CAGCGACTCATCTTTGCTGGTAAGCAGCTTGAGGATGGGAGAACCCTAGCCGACTACAAC 70033
Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765
|||||||||||||| ||||||||| |||||
Sbjct 70034 ATTCAAAAGGAGTCGACGTTGCACCTGGTG 70063
Score = 96.9 bits (106), Expect = 3e-15
Identities = 149/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615
|||||||| |||||||| || | || || ||||| || || | ||| ||| |
Sbjct 69626 ATGCAAATCTTTGTCAAGACACTGACGGGAAAAACAATCACGCTGGAAGTTGAGTCGTCA 69685
Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675
|| || | | | | || || |||||| || || ||||| | ||| || |||
Sbjct 69686 GACACCATTGACAACGTCAAGTCGAAGATTCAAGACAAGGAAGGGATTCCCCCCGACCAG 69745
Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735
||| ||||||| | ||| || || ||||| ||||||| |||| |||| |||||||||
Sbjct 69746 CAGCGACTTATCTTTGCCGGCAAGCAGCTCGAGGACGGACGAACATTGGCCGACTACAAC 69805
Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768
|| || |||||||| || ||||| ||||| ||
Sbjct 69806 ATCCAGAAGGAGTCCACCCTGCACCTGGTGCTG 69838
>seq67
Length=171618
Score = 91.5 bits (100), Expect = 1e-13
Identities = 158/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612
|| ||||| ||||| ||||| || | || || || ||||| ||| |||| |||| ||
Sbjct 155916 AAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACCATCACCCTCGAGGTGGAGTCT 155857
Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672
||| || ||| | | || || ||||| || || || ||| | ||| ||
Sbjct 155856 TCCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGAC 155797
Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732
|||||| |||| || | ||| || || ||||| ||||| | | || |||| ||||||
Sbjct 155796 CAGCAGCGACTCATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTGGCCGACTAC 155737
Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782
||||| || |||||| || ||||| ||||| || | |||| || ||
Sbjct 155736 AACATCCAGAAGGAGAGCACCCTGCACTTGGTGCTGCGCCTGCGCGGTGG 155687
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 398874617271361
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |