Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09] 449 sequences; 39,397,682 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq56 100 3e-16 >seq56 Length=194926 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 137202 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTC 137261 ||| | ||||| || ||||| || || |||||||| ||| || |||| ||||| Sbjct 69379 AACCAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCATCTTC 69320 Query 137262 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 137321 ||| |||||||||||| |||||| || ||||| ||||| || ||||| || ||||| Sbjct 69319 GAGCTGTTTACCAGCAAAGATCAAGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCTTG 69260 Query 137322 AATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTT 137381 |||||| || | | || | ||||| | | || || || | || | ||||| Sbjct 69259 AATTTTCGACTTGACATTGTCGATGGTGTCAGAAGACTCCACCTCGAGGGTGATGGTCTT 69200 Query 137382 GCCGGTCAATGTTTTTACGAATATTTGCAT 137411 ||||| | || |||||||| |||||||| Sbjct 69199 TCCGGTGAGGGTCTTTACGAAGATTTGCAT 69170 Score = 95.1 bits (104), Expect = 1e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 ||| || || | |||| ||| | ||| | || ||||| || || |||||||| ||| Sbjct 69625 GCCGCCGCGCAGGCGCAGAACGAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGC 69566 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 || |||| ||||||||||||||| |||||| |||||| |||||||| ||||| || Sbjct 69565 CAGGGTGCGGCCGTCTTCGAGTTGTTTGCCAGCAAAGATCAAGCGTTGCTGGTCGGGCGG 69506 Query 137304 TATGCCTTCTTTGTC 137318 ||||| || ||||| Sbjct 69505 GATGCCCTCCTTGTC 69491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488541258046800