Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09]
449 sequences; 39,397,682 total letters
Query= NC_024446.1
Length=306862
Score E
Sequences producing significant alignments: (Bits) Value
seq56 122 2e-22
seq67 86.0 1e-11
>seq56
Length=194926
Score = 122 bits (134), Expect = 2e-22
Identities = 156/215 (73%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655
|| || || | ||||| || || || || || || || || || | ||| |||| ||
Sbjct 70068 CGGAGCACCAGGTGCAACGTCGACTCCTTTTGAATGTTGTAGTCGGCTAGGGTTCTCCCA 70009
Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715
|| || || || || ||||||||||| |||| || ||||| ||||| || || |||||
Sbjct 70008 TCCTCAAGCTGCTTACCAGCAAAGATGAGTCGCTGCTGATCAGGAGGAATGCCCTCCTTG 69949
Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775
|||||||| || | || ||||| ||||| |||||| | || || || | || ||
Sbjct 69948 TCTTGAATTTTCGACTTCACATTATCAATGGTATCAGACGACTCCACCTCGAGCGTGATG 69889
Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
||||| || |||| |||||| || || ||||||||
Sbjct 69888 GTCTTCCCGGTCAGCGTCTTGACGAAAATCTGCAT 69854
Score = 113 bits (124), Expect = 9e-20
Identities = 154/215 (72%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655
|||||||| | || || || ||||| ||||| || || || || | || | | |||
Sbjct 69612 CGCAGAACGAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCG 69553
Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715
||||| |||||||| ||||||||||| | | ||| || || || || || || |||||
Sbjct 69552 TCTTCGAGTTGTTTGCCAGCAAAGATCAAGCGTTGCTGGTCGGGCGGGATGCCCTCCTTG 69493
Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775
||||| || || || || ||||| || || || || || || || |||| || ||
Sbjct 69492 TCTTGGATTTTCGCCTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCCAGGGTGATG 69433
Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
||||| || || | ||||| || || ||||||||
Sbjct 69432 GTCTTCCCAGTGAGGGTCTTGACGAAGATCTGCAT 69398
Score = 111 bits (122), Expect = 3e-19
Identities = 154/216 (71%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654
|||||| || | |||||| || || || ||||| || || || || | | ||| ||
Sbjct 69841 ACGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAATGTTCGTCC 69782
Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714
||| || || || || || |||||||| |||| || || || || || || ||||||||
Sbjct 69781 GTCCTCGAGCTGCTTGCCGGCAAAGATAAGTCGCTGCTGGTCGGGGGGAATCCCTTCCTT 69722
Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774
||||||||||| | || || || ||||| || || | || ||||||| || ||
Sbjct 69721 GTCTTGAATCTTCGACTTGACGTTGTCAATGGTGTCTGACGACTCAACTTCCAGCGTGAT 69662
Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|| || || |||| ||||| ||||| || |||||
Sbjct 69661 TGTTTTTCCCGTCAGTGTCTTGACAAAGATTTGCAT 69626
Score = 98.7 bits (108), Expect = 2e-15
Identities = 159/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
|||| || | || || ||||| | || || || ||||| ||||| || || || || |
Sbjct 69398 TACCGCCACGCAGGCGAAGAACCAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGG 69339
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
|| | | || ||||| || ||||| ||||||||||| | | || || || || |
Sbjct 69338 CCAGGGTGCGGCCATCTTCGAGCTGTTTACCAGCAAAGATCAAGCGCTGCTGGTCGGGCG 69279
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761
| || || ||||| |||||||| || | || ||||| || || || ||| || || |
Sbjct 69278 GGATGCCCTCCTTGTCTTGAATTTTCGACTTGACATTGTCGATGGTGTCAGAAGACTCCA 69219
Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
| || | || || ||||| || || | |||||||| || || |||||
Sbjct 69218 CCTCGAGGGTGATGGTCTTTCCGGTGAGGGTCTTTACGAAGATTTGCAT 69170
>seq67
Length=171618
Score = 86.0 bits (94), Expect = 1e-11
Identities = 148/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655
||||| || |||||||| || || ||||| || || || || | || | | ||
Sbjct 155699 CGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCA 155758
Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715
|| || || || || ||||||||||| |||| || || || || || || || |||||
Sbjct 155759 TCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCCTTG 155818
Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775
|| || ||||| | || ||||| || || || || || || || || | || ||
Sbjct 155819 TCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATG 155878
Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
||||| || || | ||||| || || ||||||||
Sbjct 155879 GTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 155913
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 981821551732211
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |