Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09] 449 sequences; 39,397,682 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq2 360 2e-94 seq67 145 7e-30 seq56 122 8e-23 seq13 116 4e-21 seq1 102 8e-17 >seq2 Length=1075658 Score = 360 bits (398), Expect = 2e-94 Identities = 1228/1883 (65%), Gaps = 83/1883 (4%) Strand=Plus/Plus Query 147939 GCAGCGGGTTGAGTGCGCAGATAGTACATGCCCGTCTTGAGGCCCATGCGCCATGCGTAG 147998 || |||| ||| ||||||| ||||||||||| |||||||| |||| ||| || Sbjct 440772 GCGGCGGCTTGCGTGCGCAAGTAGTACATGCCAGTCTTGAGACCCAGCTTCCACCCGGCA 440831 Query 147999 TCGTGCACCGACGACATGAGCGTGTAC---GTCGGGTGCGGCACAAACAGATTAAACGAC 148055 ||||| ||||| ||| | || | || |||| | || | || | ||| Sbjct 440832 AAGTGCATCGACG---TGATCTTGCCCATGGTTGGGTCCTTCATGTGAATGTTGAGAGAC 440888 Query 148056 TGGCTCTGGTCAATGAACGCGCCACGGTCAGCGGCCATTT----CA-ATGAGTCGCTTTA 148110 ||| |||||| || || || || ||||| |||||||| | || |||| |||| Sbjct 440889 TGGGACTGGTCGATAAAGGCACCGCGGTCGGCGGCCATCTGCACCACATGA--CGCTG-- 440944 Query 148111 TCTTCATCTCCCAGGCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATGC 148170 | || |||||| ||||||||||||| ||| | | |||||||| | |||| Sbjct 440945 -CGAAATTTCCCAGACCGTCTTGTACAGAGCCTTTACCTCGCCGGGAATGTTGGGGATGT 441003 Query 148171 GCTGCACCGAGCCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTGA 148230 ||| | ||||||| | |||| || |||| ||| |||| | | || | Sbjct 441004 TCTGGATCGAGCCGTTCTCGGCAATGATGCGATTCTTCATGGCGTCTGACCACAGACCCA 441063 Query 148231 GCTCGATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGC 148290 |||| || || | || || | | || || ||||| |||||||| || || |||| Sbjct 441064 TGTCGACGAGATCCTTGAGAAGCCATGGGTTGACGACCTGGAACTCGCCCGCCAGGACGC 441123 Query 148291 GCCGCAGATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCG 148350 | ||| | || | |||| ||| | || || || ||||||||||||||| |||||||| Sbjct 441124 GTCGCTGGTAAATGTTGGACGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGCG 441183 Query 148351 CGGTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTA 148410 || | |||||||||||| ||| | ||||||||||||||| | ||| | | || | Sbjct 441184 ACGTGGACGCCGTGGGCATGGGCGCGAGCAGCAGCGAGTTGCGAATCCCGTGCTCCTTGA 441243 Query 148411 TTTTGCGCTTCAGAGCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTCGT 148470 | | ||| || | |||| ||||| | ||||| ||||||||||||||||| Sbjct 441244 TCTGCTCCTTGAGGGAATCCCACTCCCACAAGTCGGACGGCGTCACGTTCCACATGTCAA 441303 Query 148471 ACTGCAGAATGCC----GCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGC 148526 ||||||| ||||| | ||| ||| | | |||| | ||| | ||| || || | | Sbjct 441304 ACTGCAGGATGCCTTCAGAGGC---CGGAGAT-CCCTTGAACGTGGAGTAGGGACCCTCC 441359 Query 148527 GCCGCCGCCAGTTCGCAGCT-CGCC-TCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTT 148584 || ||||| || || | |||| || || ||| ||| ||| || ||||| ||| | Sbjct 441360 TCCTTGGCCAGCTC-CACCGACGCCGTCAAG-GCGGCGTGGTAGATGGTCTCAAAAATCT 441417 Query 148585 GCCTGTTGAGCAGCGCCGCCGACTCGCTT---TCGTACGGCATACGCAGCCGCACAAACG 148641 || |||| ||| ||| | |||| || | ||||| || ||| | || | Sbjct 441418 GCTTGTTCAGCT-CGCGAGC--CTCGGGAGACTCAAAGGGCATGCGAAGCGCAAGGAAGG 441474 Query 148642 CGTCGGCAAGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCG 148701 ||||||| | ||| || || || || |||||||| || || |||||| | ||| | Sbjct 441475 CGTCGGCCAAGCCTTGAACACCGACACCAATGGGACGATGCCGCATGTTGCTGTTGCGTG 441534 Query 148702 CGCTCTCGAGCGGATAGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCT 148761 | | || || ||||||||| |||||||||||||| ||||| || || ||||| Sbjct 441535 CTTCTTGGACGGGGTAGTGGTTGACGTCGATGATCTTGTTGAGATTTCGGACAACCACGC 441594 Query 148762 TTGTAATTCTGCGCAGCAATTCAAAATCGTACTTGTCATCTACGATG----CATCG--GT 148815 || | | ||||| || || ||||||||| | | || | || | | Sbjct 441595 GGGTGACGTCGTGCAGCTTTTGGAAGTCGTACTTGCCTTGGTCGTAGTCCACAAAGGCGG 441654 Query 148816 TCACGGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGA 148875 || ||| | ||||| || ||||| ||||| ||| || ||||| |||||| | | Sbjct 441655 GCAGGGCAAGGGAGGCAAGGTTGCAGACGGCAACCTCGTCGGGGGCCGAGTACTCGATAA 441714 Query 148876 TCTCGGCGCACAGATT---GCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGC 148932 |||||| ||| || || ||||| || | |||| |||||| || |||||||| | Sbjct 441715 TCTCGGTGCAGAGGTTGGAGCTGCGAATGGT---TCCCAAGTTCTTCTGGTTGCTCTTCC 441771 Query 148933 TGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTA 148992 ||||||| |||||||||||||| | || |||||| || ||| | || | | Sbjct 441772 TGTTGCAATGATCCTTGTACAGCATAAAGGGGTTGCCAGTCTCGGTCTGAGCCTCGAGGA 441831 Query 148993 T---GAACCGATGCAGGTCCTGCGCGCGCA----CTTGCTGCTCGTAGCGACCCTCCTGC 149045 | | ||| ||| | ||| ||||| | ||||| || || || || || Sbjct 441832 TCGAGTACC---ACAGCTTCTGGGCGCGGATTGTCTTGCGGC----CACGGCCTTCGCGC 441884 Query 149046 TCGTATAAAGTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCAC 149105 ||||| ||||| ||| ||| | ||||||||||| ||| |||| || ||||| Sbjct 441885 TCGTACTTTTCATACAAAGCCTCAAACTCGTCGCCGTAGCAGTCGGCGAGCCCAGGGCAT 441944 Query 149106 TTGTGCGGGCACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCG 149165 | || ||||||||||| | ||| |||| | | | || |||||||| || || ||| Sbjct 441945 TCGTTGGGGCACATGAGGGTCCAGTCGCCATTCTTCTCGACACGCTTCATGAAGAGGTCG 442004 Query 149166 GGCACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAGTCTTCGGC---GCCCATGTTG 149222 || | ||| ||||| | ||||||||| || || | |||| | ||| ||| Sbjct 442005 GGGATCCACAGCGCAAGGAAGAGGTCGCGAGC---GCGGACTTCCTCCTTGCCGTGGTTC 442061 Query 149223 CGGCGCAGGTTGAGCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGC 149282 | || | || | || | || |||||||| ||||| | ||| | |||| Sbjct 442062 TTTCTGAGATCAAGGAATTCAAAGACATCGGCGTGCCAGGGCTCCAGGTAGATGGCGAAG 442121 Query 149283 GCGCCCTTGCGC---TTGCCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGA 149339 |||||| ||| |||||||| |||||||||| | | ||||||| || ||||| Sbjct 442122 GCGCCCGGTCGCTTGTTGCCGCCTTGGTCGACGTATCTGGCAGTGTTGTTGAAGACTCGC 442181 Query 149340 ACCATAGGTTCAATGCCACTGGCAGTGCCGTTAGTAGAGCTAATGCGACTGCCGCGCGCT 149399 | ||| || | | ||| | | |||||||| || | |||| ||| || Sbjct 442182 AGCATGGGAACGACGCCGTTCGAGGTGCCGTTGGTGCCGGCAATGTAGGATCCGGTAGCA 442241 Query 149400 CGCACTTTGTGCACGTTGACGCCGATGCCGCCGCCGTACTTTGAGATGGCCGCGC-AGTC 149458 || | ||| ||||| | |||||| |||||| | || || || |||| |||| Sbjct 442242 CGAATGCGGTGGACGTTCAGGCCGATACCGCCGGCCATTTTAGAAATCATGGCGCAAGTC 442301 Query 149459 GCCGAGCGTCGAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGA 149518 ||| || ||||||||||||||||||||| ||||||| | || |||||||| Sbjct 442302 -TTGAGAGTGTCGTAGATGCCCTCGATGCTGTCTTCCTTCATGTCGACGAGGAAGCACGA 442360 Query 149519 GCACATTTGCGGAAA---ACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAA 149575 | | | || || | | ||||||| || ||| | ||| || |||||| || || Sbjct 442361 GGAAA---GCTGACACTGAGGCGTGCCCGCGTTGAAGAGGGTAGGTGAGGCGTGGGTGAA 442417 Query 149576 ATATTT-CTGGCTCATCATCTCGTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGA 149634 |||| |||| ||| | | ||| | || || ||||| || |||| || || || Sbjct 442418 GAATTTACTGG-ACATGAGGTTGTAGGTTTCCAGGACGCGCTCAATGTTGTCTCCCCAGA 442476 Query 149635 TGCCTATGGCGACGCGCATCAGCATATGCTGCGGTCGCTCCGCCACTTTGTTTCCAATTT 149694 |||| | || || ||||| | ||| ||||| ||||| || | | ||| | | | Sbjct 442477 TGCCGACAGCAACACGCATGATCATGTGCTGAGGTCGTTCGACAATCTTGCCGTCCAGCT 442536 Query 149695 TGAGCAAGTAGCCGTT--TTCTAGTGTCTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCG 149752 | || | || || | || || |||||| | |||||||||| |||| ||||| | Sbjct 442537 TCAGGAGATA--CGATCGCTCCAGCGTCTTGAAACCAAAGTACTGATAGTTGAAGTCTCT 442594 Query 149753 GCCGTGGTCAATGGCGGCGTCGA 149775 ||| ||||||| | ||||| Sbjct 442595 CTCGTAAACAATGGCAGAGTCGA 442617 >seq67 Length=171618 Score = 145 bits (160), Expect = 7e-30 Identities = 158/207 (76%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | |||| ||| ||||| || ||||| ||| ||| ||| | | | |||||||| Sbjct 155708 AAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCA-TCCTCGAG 155766 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||||||| || | ||||| |||||||||||||| |||||||| |||||||| ||| Sbjct 155767 CTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGAT 155826 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||||| | || | ||||||| | |||||| |||| ||||| ||| || || Sbjct 155827 CTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTCCC 155886 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || || || |||||||||||||| Sbjct 155887 CGTGAGGGTCTTGACGAAAATCTGCAT 155913 >seq56 Length=194926 Score = 122 bits (134), Expect = 8e-23 Identities = 155/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | |||||| || ||||| || ||||| ||| ||| ||| | | | || ||||||| Sbjct 69373 ATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCA-TCTTCGAGCT 69315 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 | || || || | || | |||||||||||||| |||||||| |||||||| ||| | Sbjct 69314 GTTTACCAGCAAAGATCAAGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTC-TTGAATT 69256 Query 133576 TTTG-CTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || | ||||| | || | ||||| | | |||||| |||| ||||| ||| || ||| Sbjct 69255 TTCGACTTGACATTGTCGATGGTGTCAGAAGACTCCACCTCGAGGGTGATGGTCTTTCCG 69196 Query 133635 GTCAGAGTTTTTACGAAAATCTGCATGG 133662 || || || |||||||| || ||||||| Sbjct 69195 GTGAGGGTCTTTACGAAGATTTGCATGG 69168 Score = 116 bits (128), Expect = 4e-21 Identities = 145/199 (73%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||||||||| ||||| || ||||| ||| ||| || |||||||||||||||||| Sbjct 69823 GGTGGACTCCTTCTGGATGTTGTAGTCGGCCAATGTTCGTCCGTCCTCGAGCTGCTTGCC 69764 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || || |||||||||||||| || || ||||||||||| ||||| ||| Sbjct 69763 GGCAAAGATAAGTCGCTGCTGGTCGGGGGGAATCCCTTCCTTGTCTTGAATCTTCGACTT 69704 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | |||| ||||| | | ||| || || | |||| ||||| || ||||| || Sbjct 69703 GACGTTGTCAATGGTGTCTGACGACTCAACTTCCAGCGTGATTGTTTTTCCCGTCAGTGT 69644 Query 133643 TTTTACGAAAATCTGCATG 133661 || || || || |||||| Sbjct 69643 CTTGACAAAGATTTGCATG 69625 Score = 111 bits (122), Expect = 2e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516 ||| | |||||| || ||||| || ||||| ||| ||| ||| ||| ||||| || Sbjct 69601 ATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCTTCGAGTTG 69542 Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 ||||| || | || | || ||||||||||| |||||||| |||||||| ||| || Sbjct 69541 TTTGCCAGCAAAGATCAAGCGTTGCTGGTCGGGCGGGATGCCCTCCTTGTCTTGGATTTT 69482 Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 ||||| | || | ||||||| | |||||| || | ||||| ||| || || || Sbjct 69481 CGCCTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCCAGGGTGATGGTCTTCCCAGT 69422 Query 133637 CAGAGTTTTTACGAAAATCTGCAT 133660 || || || ||||| |||||||| Sbjct 69421 GAGGGTCTTGACGAAGATCTGCAT 69398 Score = 109 bits (120), Expect = 5e-19 Identities = 145/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||||| || || || ||||| ||| | | || | ||||| |||||||| || Sbjct 70050 GTCGACTCCTTTTGAATGTTGTAGTCGGCTAGGGTTCTCCCATCCTCAAGCTGCTTACCA 69991 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTG-CTT 133582 || | ||||| |||||||| || ||||| ||||| |||||||| ||| ||| | ||| Sbjct 69990 GCAAAGATGAGTCGCTGCTGATCAGGAGGAATGCCCTCCTTGTCT-TGAATTTTCGACTT 69932 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | |||| || || | | |||||| |||| |||| ||| || |||||||| || Sbjct 69931 CACATTATCAATGGTATCAGACGACTCCACCTCGAGCGTGATGGTCTTCCCGGTCAGCGT 69872 Query 133643 TTTTACGAAAATCTGCATG 133661 || ||||||||||||||| Sbjct 69871 CTTGACGAAAATCTGCATG 69853 >seq13 Length=702126 Score = 116 bits (128), Expect = 4e-21 Identities = 136/181 (75%), Gaps = 2/181 (1%) Strand=Plus/Minus Query 133473 TTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCCGCGTAAAT 133531 ||||| || ||||| ||| ||| || | | | ||||| ||||||||||| || | || Sbjct 289255 TTCTGAATGTTGTAGTCGGCCAGGGTTCGGCCA-TCCTCCAGCTGCTTGCCAGCAAAGAT 289197 Query 133532 GAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTC 133591 | ||||||||||||||||||||||| |||||||| |||||| ||||| | || Sbjct 289196 CAAACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTC 289137 Query 133592 AACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAA 133651 | |||||||| || ||| || |||| |||| ||| ||||| ||||| || || || || Sbjct 289136 GATCGTGTCGGAGGACTCGACCTCGAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAA 289077 Query 133652 A 133652 | Sbjct 289076 A 289076 >seq1 Length=2302571 Score = 102 bits (112), Expect = 8e-17 Identities = 160/227 (70%), Gaps = 4/227 (2%) Strand=Plus/Minus Query 120639 CAGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGT 120698 |||||| |||||||| ||||||| |||||||| || ||||| || ||||| || || Sbjct 1624969 CAGGCATGCAAAGTCGGTGTGCAAACCCTCGTCACGGGATATGAGTTCGTTTGAGAAGGT 1624910 Query 120699 CAGGCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAA-- 120756 || |||||||||| ||| | |||||| | || |||| || || ||| | | Sbjct 1624909 AAGCCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGACGCGAA--TGCACCACTG 1624852 Query 120757 AAGAACACGCCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTG 120816 ||||| | |||||| || ||| ||||| |||| || | ||| || | | | |||| Sbjct 1624851 AAGAAGATGCCCTCGACAGCGGCGAAGGCAACCAATCGTTGGGCGAAGCTAGACTCCTTG 1624792 Query 120817 CTGTCGATCCACTTCATGGCCCACTCGGCCTTTTTGCGCACGCACGG 120863 | |||||| |||||||| ||||||||||| || | ||| || Sbjct 1624791 TCTTGGATCCAGCGGATGGCCCAGTCGGCCTTTTTACGGATGCAAGG 1624745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483418086800760