Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09]
449 sequences; 39,397,682 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq2 201 1e-46
seq56 118 1e-21
>seq2
Length=1075658
Score = 201 bits (222), Expect = 1e-46
Identities = 982/1537 (64%), Gaps = 43/1537 (3%)
Strand=Plus/Plus
Query 146893 TTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAGGC 146952
||||| || || |||||||||||||| || |||| | || | ||| ||| | |||
Sbjct 441093 TTGACGACCTGGAACTCGCCCGCCAGGACGCGTCGCTGGTAAATGTTGGACGTGTAGGGC 441152
Query 146953 TCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACC 147012
|| || |||| || ||||| | || || | ||||| || || |||||| ||| | |
Sbjct 441153 TCGAAGCACTCGTTGTTGCCCAGAATCTGCGACGTGGACGCCGTGGGCATGGGCGCGAGC 441212
Query 147013 AACAATGAATTTCGCAGACCGTACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTCCCAC 147072
| || || || || | |||| | | ||| | ||||| | | | ||| ||||||
Sbjct 441213 AGCAGCGAGTTGCGAATCCCGTGCTCCTTGATCTGCTCCTTGAGGGAATCCCACTCCCAC 441272
Query 147073 A--TCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCCTCGACTGGCGGGAC 147130
| ||| || |||||||||||||||||||| |||| || | ||| | ||| |||
Sbjct 441273 AAGTCG--GACGGCGTCACGTTCCACATGTCAAACTGCAGGATGCCTTCAGAGGCCGGAG 441330
Query 147131 TGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCGCCA-ATTCACAGCTTGCCTCGAGC 147189
|| |||||| | |||| || || || |||| | ||| | | || ||
Sbjct 441331 ATCCCTTGAACGTGGAGTAGGGACCCTCCTCCTTGGCCAGCTCCACCGACGCCGTCAAG- 441389
Query 147190 GCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTCTCG 147249
|| | | ||| ||||| || || || ||||| || || || || |||
Sbjct 441390 GCGGCGTGGTAGATGGTCTCAAAAATCTGCTTGTTCAGCTCGCGAGCCTCGGGAGACTCA 441449
Query 147250 TAAGGCATACGCAGAAGCACA---AAGGCATCGGCCAAACCCTGGATACCGACGCCGATA 147306
| ||||| | ||||| || ||||| |||||||| || || | |||||| || ||
Sbjct 441450 AAGGGCATGC---GAAGCGCAAGGAAGGCGTCGGCCAAGCCTTGAACACCGACACCAATG 441506
Query 147307 GGTCGATGCTTTTCGTTGCTGCGCTTCGCGCTCGCT--ATGGGATAGTGGTTGCGATCAA 147364
|| |||||| |||||| | | || ||| | | ||| ||||||||| || |
Sbjct 441507 GGACGATGCCGCATGTTGCT--GTTGCGTGCTTCTTGGACGGGGTAGTGGTTGACGTCGA 441564
Query 147365 TAATCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTG-AGTTTCTCGAAATCA 147423
| ||||||||||| || || || || || || | || || || || | ||| ||
Sbjct 441565 TGATCTTGTTGAGATTTCGGACAACCACGCGGGTGA-CGTCGTGCAGCTTTTGGAAGTCG 441623
Query 147424 TAAGTCCCGTCTTCGACACGTACGCATTG--GTTCACGGCGATAGACGCCAGATTGCAGA 147481
|| | || | ||| || | || | | || ||| | || || || |||||||
Sbjct 441624 TACTTGCCTTGGTCG--TAGTCCACAAAGGCGGGCAGGGCAAGGGAGGCAAGGTTGCAGA 441681
Query 147482 CGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTA 147541
|||| ||| |||| | | ||||| | || |||| ||| |||||| || |
Sbjct 441682 CGGCAACCTCGTCGGGGGCCGAGTACTCGATAATCTCGGTGCAGAGGTTGGAGCTGCGAA 441741
Query 147542 TGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACG 147601
|| |||||| || | ||| ||||| |||| ||||| || ||| | ||||| | |
Sbjct 441742 TGGTTCCCAAGTTCTTCTGGTTGCTCTTCCTGTTGCAATGATCCTTGTACAGCATAAAGG 441801
Query 147602 GTCCGCCGGTCTCGACTTGCGTTTCAACGATAAACCTATGCAGGTCCTGCGCTCGCACCC 147661
| ||| |||||| || | || | ||| | ||| | ||| || || |
Sbjct 441802 GGTTGCCAGTCTCGGTCTGAGCCTCGAGGATCGAGTACCACAGCTTCTGGGCGCGGATTG 441861
Query 147662 GCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCGCCGT 147721
|| || ||||| ||| |||||| || ||||| |||||||||||||||||
Sbjct 441862 TCTTGCGGCCACGGCCTTCGCGCTCGTACTTTTCATACAAAGCCTCAAACTCGTCGCCGT 441921
Query 147722 AGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGACCACATGTCGTCCGCGT 147781
|||| ||||| || || || || | | || ||||| || | ||| | | | | |
Sbjct 441922 AGCAGTCGGCGAGCCCAGGGCATTCGTTGGGGCACATGAGGGTCCAGTCGCCATTCTTCT 441981
Query 147782 TAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAGATCGCGCGCTTTGC 147841
|| || ||| || || || || | ||||||||| | || ||||| || |
Sbjct 441982 CGACACGCTTCATGAAGAGGTCGGGGATCCACAGCGCAAGGAAGAGGTCGCGAGCGCGGA 442041
Query 147842 AATCCTCGGCGCCCATGTTGCGTTTCAAATTAAGCACGCTATAGATGTCGGCGTGCCAGG 147901
||||| ||| ||| | | | || ||| | | ||| |||||||||||||
Sbjct 442042 CTTCCTCCTTGCCGTGGTTCTTTCTGAGATCAAGGAATTCAAAGACATCGGCGTGCCAGG 442101
Query 147902 GTTCAATGTAGACGGCCAGCGCACCTTTACGC---TTTCCGCCCTGGTCGACATGGCGCA 147958
| || | ||||| ||| | || || ||| || ||||| |||||||| | |
Sbjct 442102 GCTCCAGGTAGATGGCGAAGGCGCCCGGTCGCTTGTTGCCGCCTTGGTCGACGTATCTGG 442161
Query 147959 CCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGTGCCGTTGGTGGAAT 148018
| ||||||| || || |||| |||||| | | |||| ||| ||||||||||||
Sbjct 442162 CAGTGTTGTTGAAGACTCGCAGCATGGGAACGACGCCGTTCGAGGTGCCGTTGGTGCCGG 442221
Query 148019 TGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACGCCAATGCCGCCGCCGTACT 148078
|| | | ||| || || | ||| ||||| | ||| || |||||| | |
Sbjct 442222 CAATGTAGGATCCGGTAGCACGAATGCGGTGGACGTTCAGGCCGATACCGCCGGCCATTT 442281
Query 148079 TTGATATGGCAGCGCAA-TC-GCCCAATGTCGTGTAGATGCCGTCGATGCTGTCGTTTTT 148136
| || || |||||| || | |||| ||||||||| ||||||||||| | ||
Sbjct 442282 TAGAAATCATGGCGCAAGTCTTGAGAGTGTC--GTAGATGCCCTCGATGCTGTCTTCCTT 442339
Query 148137 GACGCCAAGCAAAAAACACGAACACATTTG---CGGAATCCGCGTTCCCGCCGAGAAAAG 148193
| | | | | || ||||| | | || | || |||| ||||| ||| ||
Sbjct 442340 CATGTCGACGAGGAAGCACGAGGAAAGCTGACACTGA---GGCGTGCCCGCGTTGAAGAG 442396
Query 148194 GGTGGGACTCGCGTGCGTAAACAATTT--TTGACTCATCATGCGATACGTCTCAATAGCG 148251
||| || ||||| || || ||||| | || ||| | | || || || | ||
Sbjct 442397 GGTAGGTGAGGCGTGGGTGAAGAATTTACTGGA--CATGAGGTTGTAGGTTTCCAGGACG 442454
Query 148252 TCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGCTGTGGTCGT 148311
|| |||| ||| || ||||| | || || ||||||| ||||||||| ||||||
Sbjct 442455 CGCTCAATGTTGTCTCCCCAGATGCCGACAGCAACACGCATGATCATGTGCTGAGGTCGT 442514
Query 148312 TCGGCAA-CTTGATTGTTGATCTTGAGAAGATATCCAT-TTTCGAGGGTTTTGTAACCAA 148369
||| ||| |||| || | ||| || ||||| | || || || || ||| ||||||
Sbjct 442515 TCGACAATCTTG-CCGTCCAGCTTCAGGAGATA-CGATCGCTCCAGCGTCTTGAAACCAA 442572
Query 148370 AGTACTTGTAATCAAAATCTAGCTCGTAAGCGATGGC 148406
|||||| || | || ||| ||||||| | |||||
Sbjct 442573 AGTACTGATAGTTGAAGTCTCTCTCGTAAACAATGGC 442609
>seq56
Length=194926
Score = 118 bits (130), Expect = 1e-21
Identities = 160/223 (72%), Gaps = 0/223 (0%)
Strand=Plus/Minus
Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961
||||| ||| | |||| || | | ||||| |||||||||||||||||| | |||
Sbjct 70075 ACGCAGGCGGAGCACCAGGTGCAACGTCGACTCCTTTTGAATGTTGTAGTCGGCTAGGGT 70016
Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021
| | ||| || ||||| ||||| | | |||| || ||||| ||||| ||||| |||||
Sbjct 70015 TCTCCCATCCTCAAGCTGCTTACCAGCAAAGATGAGTCGCTGCTGATCAGGAGGAATGCC 69956
Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081
|| || || |||||| |||| | || | ||||| | || |||||| ||||
Sbjct 69955 CTCCTTGTCTTGAATTTTCGACTTCACATTATCAATGGTATCAGACGACTCCACCTCGAG 69896
Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124
||| | || || || ||||| || || | |||||||||||||
Sbjct 69895 CGTGATGGTCTTCCCGGTCAGCGTCTTGACGAAAATCTGCATG 69853
Score = 96.9 bits (106), Expect = 3e-15
Identities = 155/223 (70%), Gaps = 0/223 (0%)
Strand=Plus/Minus
Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961
||||| ||| | ||||| ||| | | | || || || || |||||||||||| || |||
Sbjct 69391 ACGCAGGCGAAGAACCAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCCAGGGT 69332
Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021
|| |||||||||||||||||| | | |||| | ||||| || || || || |||||
Sbjct 69331 GCGGCCATCTTCGAGCTGTTTACCAGCAAAGATCAAGCGCTGCTGGTCGGGCGGGATGCC 69272
Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081
|| || || |||||| || | | || | || || | | |||||| ||||
Sbjct 69271 CTCCTTGTCTTGAATTTTCGACTTGACATTGTCGATGGTGTCAGAAGACTCCACCTCGAG 69212
Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124
|| | || || || || || || |||| ||| || ||||||
Sbjct 69211 GGTGATGGTCTTTCCGGTGAGGGTCTTTACGAAGATTTGCATG 69169
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476608525019640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |