Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09] 449 sequences; 39,397,682 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq2 201 1e-46 seq56 118 1e-21 >seq2 Length=1075658 Score = 201 bits (222), Expect = 1e-46 Identities = 982/1537 (64%), Gaps = 43/1537 (3%) Strand=Plus/Plus Query 146893 TTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAGGC 146952 ||||| || || |||||||||||||| || |||| | || | ||| ||| | ||| Sbjct 441093 TTGACGACCTGGAACTCGCCCGCCAGGACGCGTCGCTGGTAAATGTTGGACGTGTAGGGC 441152 Query 146953 TCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACC 147012 || || |||| || ||||| | || || | ||||| || || |||||| ||| | | Sbjct 441153 TCGAAGCACTCGTTGTTGCCCAGAATCTGCGACGTGGACGCCGTGGGCATGGGCGCGAGC 441212 Query 147013 AACAATGAATTTCGCAGACCGTACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTCCCAC 147072 | || || || || | |||| | | ||| | ||||| | | | ||| |||||| Sbjct 441213 AGCAGCGAGTTGCGAATCCCGTGCTCCTTGATCTGCTCCTTGAGGGAATCCCACTCCCAC 441272 Query 147073 A--TCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCCTCGACTGGCGGGAC 147130 | ||| || |||||||||||||||||||| |||| || | ||| | ||| ||| Sbjct 441273 AAGTCG--GACGGCGTCACGTTCCACATGTCAAACTGCAGGATGCCTTCAGAGGCCGGAG 441330 Query 147131 TGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCGCCA-ATTCACAGCTTGCCTCGAGC 147189 || |||||| | |||| || || || |||| | ||| | | || || Sbjct 441331 ATCCCTTGAACGTGGAGTAGGGACCCTCCTCCTTGGCCAGCTCCACCGACGCCGTCAAG- 441389 Query 147190 GCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTCTCG 147249 || | | ||| ||||| || || || ||||| || || || || ||| Sbjct 441390 GCGGCGTGGTAGATGGTCTCAAAAATCTGCTTGTTCAGCTCGCGAGCCTCGGGAGACTCA 441449 Query 147250 TAAGGCATACGCAGAAGCACA---AAGGCATCGGCCAAACCCTGGATACCGACGCCGATA 147306 | ||||| | ||||| || ||||| |||||||| || || | |||||| || || Sbjct 441450 AAGGGCATGC---GAAGCGCAAGGAAGGCGTCGGCCAAGCCTTGAACACCGACACCAATG 441506 Query 147307 GGTCGATGCTTTTCGTTGCTGCGCTTCGCGCTCGCT--ATGGGATAGTGGTTGCGATCAA 147364 || |||||| |||||| | | || ||| | | ||| ||||||||| || | Sbjct 441507 GGACGATGCCGCATGTTGCT--GTTGCGTGCTTCTTGGACGGGGTAGTGGTTGACGTCGA 441564 Query 147365 TAATCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTG-AGTTTCTCGAAATCA 147423 | ||||||||||| || || || || || || | || || || || | ||| || Sbjct 441565 TGATCTTGTTGAGATTTCGGACAACCACGCGGGTGA-CGTCGTGCAGCTTTTGGAAGTCG 441623 Query 147424 TAAGTCCCGTCTTCGACACGTACGCATTG--GTTCACGGCGATAGACGCCAGATTGCAGA 147481 || | || | ||| || | || | | || ||| | || || || ||||||| Sbjct 441624 TACTTGCCTTGGTCG--TAGTCCACAAAGGCGGGCAGGGCAAGGGAGGCAAGGTTGCAGA 441681 Query 147482 CGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTA 147541 |||| ||| |||| | | ||||| | || |||| ||| |||||| || | Sbjct 441682 CGGCAACCTCGTCGGGGGCCGAGTACTCGATAATCTCGGTGCAGAGGTTGGAGCTGCGAA 441741 Query 147542 TGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACG 147601 || |||||| || | ||| ||||| |||| ||||| || ||| | ||||| | | Sbjct 441742 TGGTTCCCAAGTTCTTCTGGTTGCTCTTCCTGTTGCAATGATCCTTGTACAGCATAAAGG 441801 Query 147602 GTCCGCCGGTCTCGACTTGCGTTTCAACGATAAACCTATGCAGGTCCTGCGCTCGCACCC 147661 | ||| |||||| || | || | ||| | ||| | ||| || || | Sbjct 441802 GGTTGCCAGTCTCGGTCTGAGCCTCGAGGATCGAGTACCACAGCTTCTGGGCGCGGATTG 441861 Query 147662 GCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCGCCGT 147721 || || ||||| ||| |||||| || ||||| ||||||||||||||||| Sbjct 441862 TCTTGCGGCCACGGCCTTCGCGCTCGTACTTTTCATACAAAGCCTCAAACTCGTCGCCGT 441921 Query 147722 AGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGACCACATGTCGTCCGCGT 147781 |||| ||||| || || || || | | || ||||| || | ||| | | | | | Sbjct 441922 AGCAGTCGGCGAGCCCAGGGCATTCGTTGGGGCACATGAGGGTCCAGTCGCCATTCTTCT 441981 Query 147782 TAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAGATCGCGCGCTTTGC 147841 || || ||| || || || || | ||||||||| | || ||||| || | Sbjct 441982 CGACACGCTTCATGAAGAGGTCGGGGATCCACAGCGCAAGGAAGAGGTCGCGAGCGCGGA 442041 Query 147842 AATCCTCGGCGCCCATGTTGCGTTTCAAATTAAGCACGCTATAGATGTCGGCGTGCCAGG 147901 ||||| ||| ||| | | | || ||| | | ||| ||||||||||||| Sbjct 442042 CTTCCTCCTTGCCGTGGTTCTTTCTGAGATCAAGGAATTCAAAGACATCGGCGTGCCAGG 442101 Query 147902 GTTCAATGTAGACGGCCAGCGCACCTTTACGC---TTTCCGCCCTGGTCGACATGGCGCA 147958 | || | ||||| ||| | || || ||| || ||||| |||||||| | | Sbjct 442102 GCTCCAGGTAGATGGCGAAGGCGCCCGGTCGCTTGTTGCCGCCTTGGTCGACGTATCTGG 442161 Query 147959 CCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGTGCCGTTGGTGGAAT 148018 | ||||||| || || |||| |||||| | | |||| ||| |||||||||||| Sbjct 442162 CAGTGTTGTTGAAGACTCGCAGCATGGGAACGACGCCGTTCGAGGTGCCGTTGGTGCCGG 442221 Query 148019 TGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACGCCAATGCCGCCGCCGTACT 148078 || | | ||| || || | ||| ||||| | ||| || |||||| | | Sbjct 442222 CAATGTAGGATCCGGTAGCACGAATGCGGTGGACGTTCAGGCCGATACCGCCGGCCATTT 442281 Query 148079 TTGATATGGCAGCGCAA-TC-GCCCAATGTCGTGTAGATGCCGTCGATGCTGTCGTTTTT 148136 | || || |||||| || | |||| ||||||||| ||||||||||| | || Sbjct 442282 TAGAAATCATGGCGCAAGTCTTGAGAGTGTC--GTAGATGCCCTCGATGCTGTCTTCCTT 442339 Query 148137 GACGCCAAGCAAAAAACACGAACACATTTG---CGGAATCCGCGTTCCCGCCGAGAAAAG 148193 | | | | | || ||||| | | || | || |||| ||||| ||| || Sbjct 442340 CATGTCGACGAGGAAGCACGAGGAAAGCTGACACTGA---GGCGTGCCCGCGTTGAAGAG 442396 Query 148194 GGTGGGACTCGCGTGCGTAAACAATTT--TTGACTCATCATGCGATACGTCTCAATAGCG 148251 ||| || ||||| || || ||||| | || ||| | | || || || | || Sbjct 442397 GGTAGGTGAGGCGTGGGTGAAGAATTTACTGGA--CATGAGGTTGTAGGTTTCCAGGACG 442454 Query 148252 TCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGCTGTGGTCGT 148311 || |||| ||| || ||||| | || || ||||||| ||||||||| |||||| Sbjct 442455 CGCTCAATGTTGTCTCCCCAGATGCCGACAGCAACACGCATGATCATGTGCTGAGGTCGT 442514 Query 148312 TCGGCAA-CTTGATTGTTGATCTTGAGAAGATATCCAT-TTTCGAGGGTTTTGTAACCAA 148369 ||| ||| |||| || | ||| || ||||| | || || || || ||| |||||| Sbjct 442515 TCGACAATCTTG-CCGTCCAGCTTCAGGAGATA-CGATCGCTCCAGCGTCTTGAAACCAA 442572 Query 148370 AGTACTTGTAATCAAAATCTAGCTCGTAAGCGATGGC 148406 |||||| || | || ||| ||||||| | ||||| Sbjct 442573 AGTACTGATAGTTGAAGTCTCTCTCGTAAACAATGGC 442609 >seq56 Length=194926 Score = 118 bits (130), Expect = 1e-21 Identities = 160/223 (72%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| ||| | |||| || | | ||||| |||||||||||||||||| | ||| Sbjct 70075 ACGCAGGCGGAGCACCAGGTGCAACGTCGACTCCTTTTGAATGTTGTAGTCGGCTAGGGT 70016 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 | | ||| || ||||| ||||| | | |||| || ||||| ||||| ||||| ||||| Sbjct 70015 TCTCCCATCCTCAAGCTGCTTACCAGCAAAGATGAGTCGCTGCTGATCAGGAGGAATGCC 69956 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || |||||| |||| | || | ||||| | || |||||| |||| Sbjct 69955 CTCCTTGTCTTGAATTTTCGACTTCACATTATCAATGGTATCAGACGACTCCACCTCGAG 69896 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 ||| | || || || ||||| || || | ||||||||||||| Sbjct 69895 CGTGATGGTCTTCCCGGTCAGCGTCTTGACGAAAATCTGCATG 69853 Score = 96.9 bits (106), Expect = 3e-15 Identities = 155/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| ||| | ||||| ||| | | | || || || || |||||||||||| || ||| Sbjct 69391 ACGCAGGCGAAGAACCAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCCAGGGT 69332 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || |||||||||||||||||| | | |||| | ||||| || || || || ||||| Sbjct 69331 GCGGCCATCTTCGAGCTGTTTACCAGCAAAGATCAAGCGCTGCTGGTCGGGCGGGATGCC 69272 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || |||||| || | | || | || || | | |||||| |||| Sbjct 69271 CTCCTTGTCTTGAATTTTCGACTTGACATTGTCGATGGTGTCAGAAGACTCCACCTCGAG 69212 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || | || || || || || || |||| ||| || |||||| Sbjct 69211 GGTGATGGTCTTTCCGGTGAGGGTCTTTACGAAGATTTGCATG 69169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476608525019640