Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09] 449 sequences; 39,397,682 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq23 141 1e-28 >seq23 Length=560556 Score = 141 bits (156), Expect = 1e-28 Identities = 276/402 (69%), Gaps = 12/402 (3%) Strand=Plus/Minus Query 147105 CACGTAAAACTG-GCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGCGG 147163 |||||| ||||| ||| | | |||||| ||||||||||||||| | |||||||| | Sbjct 480183 CACGTAGAACTGCGCAAAC-ACGTGGCAAGGCGGCAGCGCCATGAGGTGCAGGTCCCGCG 480125 Query 147164 GGTTCCAGGCCGAGACCACCAGCCGCCTGCTCTCG---GGGTTCCTCTTAATCTCTTCGA 147220 |||||| || | || | ||||| ||| || | |||| | || |||| Sbjct 480124 CGTTCCACGC---GCTCATGATGATCCTGCGGTCGTACGGCCTGGTCTTGAGCTTGTCGA 480068 Query 147221 TAACCCACCTCAGCTGGTCCACGCCCTGGCCCCCGTAGTTTGTCCCGCAGTCCACGTACC 147280 | || |||||||| || |||| |||| ||||| ||| | |||||||||| Sbjct 480067 TGACGTCGGCGAGCTGGTCGACCCCCTTGCCCGTGTAGTCCGTCTTGGCGTCCACGTACT 480008 Query 147281 TGGCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGT 147340 || |||||||||| ||||||||||||||| || || || |||||||| || | || Sbjct 480007 CTGCGCCAAAGTGCCGCCACTGGAAGCCGTAGACGGGGCCGAGGTCGCCCTCCTCGCGGT 479948 Query 147341 GCGAGAAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTC 147400 ||| | |||| | | ||| |||||| | ||||||| | ||||||| || || | Sbjct 479947 GCGTCAGGCCCAGGCTGTCGAGGAACTCGCGCGACCCGTTGCCGTCCCATATCTTGACGC 479888 Query 147401 C--CTTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGAACCAGAGCAGCTCCTC 147458 | | | || ||||| || ||||| ||| |||| ||||||||| |||||||| | Sbjct 479887 CGACGTCGCTGAGAG--CCCGGGAGTCGGTGTTGCCCTCGATGAACCACAGCAGCTCGGC 479830 Query 147459 CAAAACCCCCCTCCAAAAGACCCTCTTGGTGGTCAGCAGGGG 147500 | || | | | ||| |||| ||| ||||| || || || Sbjct 479829 GACGACGGCGCGCAGAAACACCCGCTTCGTGGTGAGGAGCGG 479788 Score = 131 bits (144), Expect = 2e-25 Identities = 159/217 (73%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 146870 AAATCTTGAGCTTGGGGAAGGGTCGGGGGTTCCTGGCCAGCTGAATTTTCAGGGGCTCCA 146929 |||||| ||||| |||||| || || | || ||| ||| | || |||| |||| Sbjct 480511 AAATCTCGAGCTCGGGGAACTCGCGAGGCTCCCGCTCCACCTGCACGTTGAGGGCCTCCT 480452 Query 146930 CGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGGC 146989 | || | | ||||||||||||||| |||| | ||| | | || || | ||| Sbjct 480451 CATGATCGGCGTAGACGTGCGCGTCGCCCATGACGTGGGTCAGGCTGCCGGGTATCAGGT 480392 Query 146990 CGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCC 147049 || |||||| |||||||||| ||||| |||| ||||||||| |||||||| || || | Sbjct 480391 CGCACACGTGCGCCACCATGTGCGTGAGGAGCGCGTAGCTGGCAATGTTGAACGGCACGC 480332 Query 147050 CCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCA 147086 | || |||||||| | |||| ||||||||||||||| Sbjct 480331 CGAGACCCATGTCGCAGGACCGCTGGTACAGCTGGCA 480295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583484725173600