Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09]
449 sequences; 39,397,682 total letters
Query= NC_026421.1
Length=182380
Score E
Sequences producing significant alignments: (Bits) Value
seq23 141 1e-28
>seq23
Length=560556
Score = 141 bits (156), Expect = 1e-28
Identities = 276/402 (69%), Gaps = 12/402 (3%)
Strand=Plus/Minus
Query 147105 CACGTAAAACTG-GCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGCGG 147163
|||||| ||||| ||| | | |||||| ||||||||||||||| | |||||||| |
Sbjct 480183 CACGTAGAACTGCGCAAAC-ACGTGGCAAGGCGGCAGCGCCATGAGGTGCAGGTCCCGCG 480125
Query 147164 GGTTCCAGGCCGAGACCACCAGCCGCCTGCTCTCG---GGGTTCCTCTTAATCTCTTCGA 147220
|||||| || | || | ||||| ||| || | |||| | || ||||
Sbjct 480124 CGTTCCACGC---GCTCATGATGATCCTGCGGTCGTACGGCCTGGTCTTGAGCTTGTCGA 480068
Query 147221 TAACCCACCTCAGCTGGTCCACGCCCTGGCCCCCGTAGTTTGTCCCGCAGTCCACGTACC 147280
| || |||||||| || |||| |||| ||||| ||| | ||||||||||
Sbjct 480067 TGACGTCGGCGAGCTGGTCGACCCCCTTGCCCGTGTAGTCCGTCTTGGCGTCCACGTACT 480008
Query 147281 TGGCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGT 147340
|| |||||||||| ||||||||||||||| || || || |||||||| || | ||
Sbjct 480007 CTGCGCCAAAGTGCCGCCACTGGAAGCCGTAGACGGGGCCGAGGTCGCCCTCCTCGCGGT 479948
Query 147341 GCGAGAAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTC 147400
||| | |||| | | ||| |||||| | ||||||| | ||||||| || || |
Sbjct 479947 GCGTCAGGCCCAGGCTGTCGAGGAACTCGCGCGACCCGTTGCCGTCCCATATCTTGACGC 479888
Query 147401 C--CTTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGAACCAGAGCAGCTCCTC 147458
| | | || ||||| || ||||| ||| |||| ||||||||| |||||||| |
Sbjct 479887 CGACGTCGCTGAGAG--CCCGGGAGTCGGTGTTGCCCTCGATGAACCACAGCAGCTCGGC 479830
Query 147459 CAAAACCCCCCTCCAAAAGACCCTCTTGGTGGTCAGCAGGGG 147500
| || | | | ||| |||| ||| ||||| || || ||
Sbjct 479829 GACGACGGCGCGCAGAAACACCCGCTTCGTGGTGAGGAGCGG 479788
Score = 131 bits (144), Expect = 2e-25
Identities = 159/217 (73%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 146870 AAATCTTGAGCTTGGGGAAGGGTCGGGGGTTCCTGGCCAGCTGAATTTTCAGGGGCTCCA 146929
|||||| ||||| |||||| || || | || ||| ||| | || |||| ||||
Sbjct 480511 AAATCTCGAGCTCGGGGAACTCGCGAGGCTCCCGCTCCACCTGCACGTTGAGGGCCTCCT 480452
Query 146930 CGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGGC 146989
| || | | ||||||||||||||| |||| | ||| | | || || | |||
Sbjct 480451 CATGATCGGCGTAGACGTGCGCGTCGCCCATGACGTGGGTCAGGCTGCCGGGTATCAGGT 480392
Query 146990 CGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCC 147049
|| |||||| |||||||||| ||||| |||| ||||||||| |||||||| || || |
Sbjct 480391 CGCACACGTGCGCCACCATGTGCGTGAGGAGCGCGTAGCTGGCAATGTTGAACGGCACGC 480332
Query 147050 CCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCA 147086
| || |||||||| | |||| |||||||||||||||
Sbjct 480331 CGAGACCCATGTCGCAGGACCGCTGGTACAGCTGGCA 480295
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583484725173600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |