Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09] 449 sequences; 39,397,682 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq3 141 1e-27 seq2 134 2e-25 seq48 107 3e-17 seq1 105 1e-16 >seq3 Length=991023 Score = 141 bits (156), Expect = 1e-27 Identities = 269/384 (70%), Gaps = 24/384 (6%) Strand=Plus/Plus Query 1816027 CTCAATGTAGGTGGCGTCGGCGCCGTCGCCGCCATATGCAAACTGGACAATGTCGCCGTT 1816086 ||| ||| | ||||||| |||||| |||| || |||||||||||||||||| Sbjct 312085 CTCGATGCACATGGCGTCCAGGCCGTCCTCGCCGTAGAGGAACTGGACAATGTCGCCGAG 312144 Query 1816087 GGCGTTGCGCACGAGGCCGCCG---CGCTTGATCTGCAGGCTCTCCATCGACTTGATGCA 1816143 | ||||||||| ||| || ||| | || ||| ||| | || ||||| Sbjct 312145 CGAGTTGCGCACCGTCCCGTCGTACCGCGCGCTC---AGGTCCTCGAGCGCCTTGACCAG 312201 Query 1816144 CCGGCGCTGGATGTAGCCACGTC-CGGCGGTCTTGACGGCCGTGTCGACCAGGCCCTCGC 1816202 ||| |||||||||||||| |||| |||| ||||||||||||||||||| |||||||||| Sbjct 312202 CCGCCGCTGGATGTAGCC-CGTCTCGGCCGTCTTGACGGCCGTGTCGATGAGGCCCTCGC 312260 Query 1816203 GGCCGCCGATCATGTGCAAAAACATCTCGCGCGAGTTGAGGCCGCGCTCGTACGAGTTGC 1816262 | ||| | || ||| || || | |||| || | ||||||||| ||||||||| Sbjct 312261 GACCGGCCATGGCGTGGAAGAAGAACTCGGTCGGCGTCAGGCCGCGCAGGTACGAGTTCT 312320 Query 1816263 GCACAAAGCCGCGGCTCTCGGGCGGCGGCACGGCCTCGG---CGTGCCGGTAGCAGCCCA 1816319 || ||||||||| |||||||| || ||| || ||| ||| ||| | || Sbjct 312321 CGACGAAGCCGCGGGCCTCGGGCGAGTAGTCGTCCTTGGTGAAGTG-CGGCAGC-GTCCG 312378 Query 1816320 GTGTGCGCGAACCCGACTCGGAGTGGATGCGCTGGCCCTCATTGCTCTGCTGGCCCACGC 1816379 || | ||| || | || ||||||||| |||||| |||||||||| || | Sbjct 312379 GTAT--TTGAAGCCAA-----AGGGGATGCGCTTGCCCTCGACAATCTGCTGGCCGAC-C 312430 Query 1816380 A--GCCGCACATCTGGGTGATGTT 1816401 | |||| |||||||| |||||| Sbjct 312431 AGGGCCG-TCATCTGGGAGATGTT 312453 Score = 122 bits (134), Expect = 1e-21 Identities = 253/374 (68%), Gaps = 6/374 (2%) Strand=Plus/Plus Query 1812944 ACGTCCGAGATGGCCGTGCCGATGGGCGCCGCCTGGCCCAGGATGATGGGCTCCGTGACC 1813003 ||||| || || | ||||| ||||||||| ||||||||| |||| | |||| || Sbjct 310370 ACGTCAAAGTTGCCGGTGCCCATGGGCGCCAGCTGGCCCAGCATGACGTTTTCCGAGAT- 310428 Query 1813004 GAGCCGTCGGTGATCTTGTCGGTCTCGGCAAAGGCCGCCGCGTCAAAGAGGATGTCGACA 1813063 |||| ||| || ||| ||| | |||||| || || | |||||| ||||| Sbjct 310429 --GCCG-CGGCAGTC--GTCAAGCTCCCCGGTGGCCGCGGCCTCGAGGAGGATCTCGACC 310483 Query 1813064 GTCTCCTCAAAAGAGGCGCGCGACAGAAAACCGTGGTCGGCGCGGTTAAAGCCGTGCCGC 1813123 |||||||| || ||| |||| ||| || |||||||||||| | ||||||||| Sbjct 310484 GTCTCCTCGAAGGAGCAGCGCATCAGGGCCCCCGTGTCGGCGCGGTTGATGCCGTGCCGG 310543 Query 1813124 GTGACGGCCACCACTGAGCCGCGGCAACACATGGTGTCGGTGGCCAGCGCAAAGTGGCGG 1813183 ||||||||| | ||| ||| | |||| |||| | ||| || | ||||||| Sbjct 310544 GTGACGGCCGAGATGCTGCCCCGGTACGTCATGACGTCGACGAGCAGGGCGATGTGGCGG 310603 Query 1813184 TCGTTGACATAGGTGCCGTCAAAGGAGATCACGGCCTTGATCTCGGAAAAGAGCACGGCC 1813243 | |||||| |||| ||||||||||| | |||| | | ||| | ||| ||| | Sbjct 310604 TGGTTGACGTAGGAGCCGTCAAAGGCCAGCACGTTGGTCAGCTCCTTGACCAGCGCGGAC 310663 Query 1813244 ACGGCAGCCTCTATGCCCAGCACGGCCGCCACGCGGTTGATGTCGTTGGTGTGGCTGCGC 1813303 || ||||| ||||| | || | | | | || ||||||||||| | |||| Sbjct 310664 CGCGCGGCCTCGATGCCAAAGACCTCGACAATCTGCCAGAGGTCGTTGGTGTAGGTGCGG 310723 Query 1813304 GAGGCATCCACGCC 1813317 | || |||||||| Sbjct 310724 GTGGGGTCCACGCC 310737 Score = 102 bits (112), Expect = 1e-15 Identities = 154/218 (71%), Gaps = 1/218 (0%) Strand=Plus/Plus Query 1817560 ACCTCGGCGCGCGCGTC-TCAGACTGGGGCACATGGAGGTTCATCTCGTCGCCGTCAAAG 1817618 ||||||||||||| || || ||||||||| || |||||||||||||| ||||||||| Sbjct 313232 ACCTCGGCGCGCGTCTCCTCGCTCTGGGGCACGTGCAGGTTCATCTCGTCTCCGTCAAAG 313291 Query 1817619 TCGGCATTGTAGGTGCCCGTGACGGCCAGGTTGAACCGCATGGTACGGCCGGGCATGGGC 1817678 ||||| ||||||| |||||| | |||||| | || | || | |||||| Sbjct 313292 TCGGCGTTGTAGGGCGACGTGACCGACAGGTTCAGGCGAAACGTCGAGTACGGCATGACG 313351 Query 1817679 ACCACCTTGTGCATGAGCATGGAGCCCATGTGGAGTGAGGGCTGCCGGTTCATCACCACG 1817738 || ||| | |||||| || |||| || |||||||||||||| | | | | Sbjct 313352 CGGACGCGGTGGCCCATCATGGACTCCTTGTGCAGCGAGGGCTGCCGGTTGAAGATGATG 313411 Query 1817739 GCGTCGCCGGCGCGCAGGTGACGCTCGACTGTCCACCC 1817776 ||||||| | |||||| ||||| || |||| || Sbjct 313412 TAGTCGCCGTCCATCAGGTGCCGCTCCACCTTCCAGCC 313449 >seq2 Length=1075658 Score = 134 bits (148), Expect = 2e-25 Identities = 334/503 (66%), Gaps = 17/503 (3%) Strand=Plus/Minus Query 259680 AGCACAAGGAGGTCCTCGACGCTGCCATCTGCCACGGCCGAGACTTTGGCTACTCGTACT 259739 ||||||| |||| |||||| ||||||| ||| ||||||| ||| ||||| Sbjct 442632 AGCACAAAGAGGAGCTCGACTCTGCCATTGTTTACGAGAGAGACTTCAACTATCAGTACT 442573 Query 259740 TTGGTCTGGCGACCTTGCGCCGGTCCTACCTGACCAAAGTGCGCGATATTGTCGTCGAGC 259799 ||||| | ||| || || || || || || || || | | ||||| | Sbjct 442572 TTGGTTTCAAGACGCTGGAGCGATCGTATCTCCTGAAGCTGGACGGCAAGATTGTCGAAC 442513 Query 259800 GGCCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCGACGTCGACA 259859 | || ||| | ||| |||||||||| || | ||| | |||| || |||| Sbjct 442512 GACCTCAGCACATGATCATGCGTGTTGCTGTCGGCA--TCTGGG------GA----GACA 442465 Query 259860 ATGCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCAG-TTGTTCACCTCA 259918 | | |||| ||| || | |||||| | |||||| ||| | || |||||| Sbjct 442464 ACA---TTGAGCGCGTCCTGGAAACCTACAACCTCATGTC-CAGTAAATTCTTCACCCAC 442409 Query 259919 GCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTG 259978 || | || || ||||| || || |||||||| | ||| ||| |||||||| || Sbjct 442408 GCCTCACCTACCCTCTTCAACGCGGGCACGCCTCAGTGTCAGCTTTCCTCGTGCTTCCTC 442349 Query 259979 TTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTC 260038 | |||||||||| || |||||||||||||| ||||| |||||| ||||| | Sbjct 442348 GTCGACATGAAGGAAGACAGCATCGAGGGCATCTACGACACTCTCAAGACTTGCGCCATG 442289 Query 260039 ATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCC 260098 || || || ||||||||| ||||| | || ||| | || || | || || Sbjct 442288 ATTTCTAAAATGGCCGGCGGTATCGGCCTGAACGTCCACCGCATTCGTGCTACCGGATCC 442229 Query 260099 TACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAAC 260158 ||| | || |||||||||||| || |||||| | || |||||||| || || || ||| Sbjct 442228 TACATTGCCGGCACCAACGGCACCTCGAACGGCGTCGTTCCCATGCTGCGAGTCTTCAAC 442169 Query 260159 GACACGGCGCGCTACGTCGACCA 260181 |||| || | ||||||||||| Sbjct 442168 AACACTGCCAGATACGTCGACCA 442146 Score = 129 bits (142), Expect = 8e-24 Identities = 337/509 (66%), Gaps = 24/509 (5%) Strand=Plus/Minus Query 262913 AGCATGGCCTGCGCAACTCGTTGCTCGTGGCGCTCATGCCCACGGCCACGACGTCGCAGA 262972 |||| || | ||||||||| |||| | |||| |||||||||||| | |||||||||| Sbjct 441237 AGCACGGGATTCGCAACTCGCTGCTGCTCGCGCCCATGCCCACGGCGTCCACGTCGCAGA 441178 Query 262973 TCCTGGGCAACACCGAGGCGTTCGAGGTCATCACGAGCAACATCTACACGCGCCGCGTGC 263032 | |||||||||| |||| |||||| | |||| |||||| ||| ||| ||||| | Sbjct 441177 TTCTGGGCAACAACGAGTGCTTCGAGCCCTACACGTCCAACATTTACCAGCGACGCGTCC 441118 Query 263033 TCTCGGGCGACTTTACCGTGGTCAACCGCCACCTGGTCAAGCGCATGGTGGCGCGCGGCC 263092 | ||||||| || || ||||||| || ||||| | || | || | Sbjct 441117 TGGCGGGCGAGTTCCAGGTCGTCAACCCATGGCTTCTCAAGGATCTCGTCGACATGGGTC 441058 Query 263093 TGTGGACGCCCGACTTTCGCGACCGGCTCATTGCGGCACAGGGCTCGGTGCAGGGCTTTG 263152 ||||| | || | | | || ||||||| | | |||||| | ||| | | Sbjct 441057 TGTGGTCAGACGCCATGAAGAATCGCATCATTGCCGAGAACGGCTCGATCCAGAACATCC 440998 Query 263153 ACGACGAGGAGGTGCCGCCCGATCTCAAGGCTCTCTTCAAGACCGTGTGGG-AGGTGCCC 263211 | || | || ||| | |||||||| | |||||| || |||| | | | | Sbjct 440997 CCAAC------ATTCCCGGCGAGGTAAAGGCTCTGTACAAGACGGTCTGGGAAATTTCGC 440944 Query 263212 AAC--CGGGTGACCATTGATATGGCGGCCGACCGCGCGCCCTATGTCGACCAGAGCCAGT 263269 | | | ||| | | ||||| |||||||||| ||| | |||||||| ||||| Sbjct 440943 AGCGTCATGTG---GTGCAGATGGCCGCCGACCGCGGTGCCTTTATCGACCAGTCCCAGT 440887 Query 263270 CGCTCAACCTGTACCTCGCCGACCCGAC---GGCCGAGAGCATCACGTCGATGCAC---G 263323 | |||||| | || | ||||| || || | || ||||||||||||||| | Sbjct 440886 CTCTCAACATTCACATGAAGGACCCAACCATGGGCAAG---ATCACGTCGATGCACTTTG 440830 Query 263324 CCTATGCGTGGCGTCGCGGCCTCAAGACTGGCATGTACTATCTGCGCACCCGGCCCGCTG 263383 || | |||| | || |||||||||||||||||||| ||||||| | |||| | Sbjct 440829 CC---GGGTGGAAGCTGGGTCTCAAGACTGGCATGTACTACTTGCGCACGCAAGCCGCCG 440773 Query 263384 CCAACGCCATTCAATTCACCGTCGATCAG 263412 | | |||| || |||||||| || ||| Sbjct 440772 CGGCCCCCATCCAGTTCACCGTTGACCAG 440744 >seq48 Length=244570 Score = 107 bits (118), Expect = 3e-17 Identities = 175/247 (71%), Gaps = 10/247 (4%) Strand=Plus/Plus Query 1600501 GTCGACGGTGACGCCGCCAAAGGGCGTGCCGTCGCCCACATAGCCCTCGCGGCAGGCCAC 1600560 ||| || || ||| || |||||||||| | |||||| | |||||| | || ||| Sbjct 120140 GTCAACTGTCACGTCGGTAAAGGGCGTGGCATCGCCCTCCATGCCCTCCAGCGTGGACAC 120199 Query 1600561 CTTGCCCAGGAGGGCCTCCATCATCTTGCCCATGGTCATGCGCGACGGGATGGCGTGCGG 1600620 ||||| || ||| ||| |||| | | | || ||||| |||||||| ||||||||||| Sbjct 120200 CTTGCTTAGCAGGCACTCGATCAAGTGGGCAATTGTCATTCGCGACGGAATGGCGTGCGG 120259 Query 1600621 GTTGATCACAATGTCGGGCGTGGCACCGCCGCGAGGCGACCAGGGCATGTCCTC--GGTG 1600678 |||||| | ||||| |||||| | || | | | | ||||||||||||| | | Sbjct 120260 GTTGATGATGATGTCTGGCGTGACCCCTTCCC---GTGTAAAGGGCATGTCCTCCTGCCG 120316 Query 1600679 GAGCG-CACGCTGCCCACGGTGCCCTTTTGGCCGTGGCGCGACGACAGTTTGTCGCCCAC 1600737 | || ||| || | ||||||||||| ||||| || |||| | |||||||| | Sbjct 120317 GTACGTCAC---ACCAATCGTGCCCTTTTGTCCGTGACGAGACGCAAACTTGTCGCCAAT 120373 Query 1600738 CT-CGGG 1600743 || |||| Sbjct 120374 CTGCGGG 120380 >seq1 Length=2302571 Score = 105 bits (116), Expect = 1e-16 Identities = 125/161 (78%), Gaps = 15/161 (9%) Strand=Plus/Plus Query 1456123 AAAAAGGCCGACTGGGCGATGAAGTGGATCAA---CAAGGAGGGCCTCGACACTTTGCCG 1456179 ||||||||||||||||| || |||||| | ||||||| || | ||| ||| Sbjct 1624757 AAAAAGGCCGACTGGGCCATCCGCTGGATCCAAGACAAGGAGT--CTAG---CTTCGCCC 1624811 Query 1456180 AGCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTC--TCGGGCAGTTTCTGCG- 1456235 | || | || | ||| ||||| |||||||||||||| ||| | | ||| ||| ||| Sbjct 1624812 AACGATTGGTTGCCTTCGCCGCTGTCGAGGGCATCTTCTTCAGTGGTGCA--TTC-GCGT 1624868 Query 1456236 CCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTT 1456276 ||||||||||||||||||||||||||||||||||||| ||| Sbjct 1624869 CCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGGCTT 1624909 Score = 95.1 bits (104), Expect = 2e-13 Identities = 185/267 (69%), Gaps = 5/267 (2%) Strand=Plus/Plus Query 1456515 CCAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGC 1456574 ||||| | |||||| ||| |||||| || ||| |||| || | | ||| | |||| Sbjct 1625011 CCAAGAA-ATCATCACCGATGCCGTCACCATTGAGCAAGATTTCCTGACGGAGGCTCTGC 1625069 Query 1456575 CGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGC 1456634 || || || ||||||||||| ||| | || ||| || ||||| ||| || || || Sbjct 1625070 CGTGCGCTCTTCTCGGCATGAACTCCA-CACTGATGAAGCAATACATCGAA-TTCGTTGC 1625127 Query 1456635 CGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCC 1456694 |||||||||| | | || ||||| || ||| ||| ||| || || ||||| Sbjct 1625128 CGACCGCCTGTTGGTTGCTCTCGG-GAATGAAAAGGTGTACAAGACAGCGAATCCGTTTG 1625186 Query 1456695 CATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCG-TGGCG 1456753 | |||||| ||||| || | ||||||||||||||||| ||| || | ||| | Sbjct 1625187 ATTTTATGGAGAATATCTCCCTGGGTGGCAAGACCAACTTTTTTGAGAAGCGAGTTGGTG 1625246 Query 1456754 AGTACGCCAAGGCCGGCGTCACCGCCA 1456780 | ||| |||||||| |||| |||| Sbjct 1625247 AATACCAGAAGGCCGGTGTCATGGCCA 1625273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177767893124738