Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09]
449 sequences; 39,397,682 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq3 141 1e-27
seq2 134 2e-25
seq48 107 3e-17
seq1 105 1e-16
>seq3
Length=991023
Score = 141 bits (156), Expect = 1e-27
Identities = 269/384 (70%), Gaps = 24/384 (6%)
Strand=Plus/Plus
Query 1816027 CTCAATGTAGGTGGCGTCGGCGCCGTCGCCGCCATATGCAAACTGGACAATGTCGCCGTT 1816086
||| ||| | ||||||| |||||| |||| || ||||||||||||||||||
Sbjct 312085 CTCGATGCACATGGCGTCCAGGCCGTCCTCGCCGTAGAGGAACTGGACAATGTCGCCGAG 312144
Query 1816087 GGCGTTGCGCACGAGGCCGCCG---CGCTTGATCTGCAGGCTCTCCATCGACTTGATGCA 1816143
| ||||||||| ||| || ||| | || ||| ||| | || |||||
Sbjct 312145 CGAGTTGCGCACCGTCCCGTCGTACCGCGCGCTC---AGGTCCTCGAGCGCCTTGACCAG 312201
Query 1816144 CCGGCGCTGGATGTAGCCACGTC-CGGCGGTCTTGACGGCCGTGTCGACCAGGCCCTCGC 1816202
||| |||||||||||||| |||| |||| ||||||||||||||||||| ||||||||||
Sbjct 312202 CCGCCGCTGGATGTAGCC-CGTCTCGGCCGTCTTGACGGCCGTGTCGATGAGGCCCTCGC 312260
Query 1816203 GGCCGCCGATCATGTGCAAAAACATCTCGCGCGAGTTGAGGCCGCGCTCGTACGAGTTGC 1816262
| ||| | || ||| || || | |||| || | ||||||||| |||||||||
Sbjct 312261 GACCGGCCATGGCGTGGAAGAAGAACTCGGTCGGCGTCAGGCCGCGCAGGTACGAGTTCT 312320
Query 1816263 GCACAAAGCCGCGGCTCTCGGGCGGCGGCACGGCCTCGG---CGTGCCGGTAGCAGCCCA 1816319
|| ||||||||| |||||||| || ||| || ||| ||| ||| | ||
Sbjct 312321 CGACGAAGCCGCGGGCCTCGGGCGAGTAGTCGTCCTTGGTGAAGTG-CGGCAGC-GTCCG 312378
Query 1816320 GTGTGCGCGAACCCGACTCGGAGTGGATGCGCTGGCCCTCATTGCTCTGCTGGCCCACGC 1816379
|| | ||| || | || ||||||||| |||||| |||||||||| || |
Sbjct 312379 GTAT--TTGAAGCCAA-----AGGGGATGCGCTTGCCCTCGACAATCTGCTGGCCGAC-C 312430
Query 1816380 A--GCCGCACATCTGGGTGATGTT 1816401
| |||| |||||||| ||||||
Sbjct 312431 AGGGCCG-TCATCTGGGAGATGTT 312453
Score = 122 bits (134), Expect = 1e-21
Identities = 253/374 (68%), Gaps = 6/374 (2%)
Strand=Plus/Plus
Query 1812944 ACGTCCGAGATGGCCGTGCCGATGGGCGCCGCCTGGCCCAGGATGATGGGCTCCGTGACC 1813003
||||| || || | ||||| ||||||||| ||||||||| |||| | |||| ||
Sbjct 310370 ACGTCAAAGTTGCCGGTGCCCATGGGCGCCAGCTGGCCCAGCATGACGTTTTCCGAGAT- 310428
Query 1813004 GAGCCGTCGGTGATCTTGTCGGTCTCGGCAAAGGCCGCCGCGTCAAAGAGGATGTCGACA 1813063
|||| ||| || ||| ||| | |||||| || || | |||||| |||||
Sbjct 310429 --GCCG-CGGCAGTC--GTCAAGCTCCCCGGTGGCCGCGGCCTCGAGGAGGATCTCGACC 310483
Query 1813064 GTCTCCTCAAAAGAGGCGCGCGACAGAAAACCGTGGTCGGCGCGGTTAAAGCCGTGCCGC 1813123
|||||||| || ||| |||| ||| || |||||||||||| | |||||||||
Sbjct 310484 GTCTCCTCGAAGGAGCAGCGCATCAGGGCCCCCGTGTCGGCGCGGTTGATGCCGTGCCGG 310543
Query 1813124 GTGACGGCCACCACTGAGCCGCGGCAACACATGGTGTCGGTGGCCAGCGCAAAGTGGCGG 1813183
||||||||| | ||| ||| | |||| |||| | ||| || | |||||||
Sbjct 310544 GTGACGGCCGAGATGCTGCCCCGGTACGTCATGACGTCGACGAGCAGGGCGATGTGGCGG 310603
Query 1813184 TCGTTGACATAGGTGCCGTCAAAGGAGATCACGGCCTTGATCTCGGAAAAGAGCACGGCC 1813243
| |||||| |||| ||||||||||| | |||| | | ||| | ||| ||| |
Sbjct 310604 TGGTTGACGTAGGAGCCGTCAAAGGCCAGCACGTTGGTCAGCTCCTTGACCAGCGCGGAC 310663
Query 1813244 ACGGCAGCCTCTATGCCCAGCACGGCCGCCACGCGGTTGATGTCGTTGGTGTGGCTGCGC 1813303
|| ||||| ||||| | || | | | | || ||||||||||| | ||||
Sbjct 310664 CGCGCGGCCTCGATGCCAAAGACCTCGACAATCTGCCAGAGGTCGTTGGTGTAGGTGCGG 310723
Query 1813304 GAGGCATCCACGCC 1813317
| || ||||||||
Sbjct 310724 GTGGGGTCCACGCC 310737
Score = 102 bits (112), Expect = 1e-15
Identities = 154/218 (71%), Gaps = 1/218 (0%)
Strand=Plus/Plus
Query 1817560 ACCTCGGCGCGCGCGTC-TCAGACTGGGGCACATGGAGGTTCATCTCGTCGCCGTCAAAG 1817618
||||||||||||| || || ||||||||| || |||||||||||||| |||||||||
Sbjct 313232 ACCTCGGCGCGCGTCTCCTCGCTCTGGGGCACGTGCAGGTTCATCTCGTCTCCGTCAAAG 313291
Query 1817619 TCGGCATTGTAGGTGCCCGTGACGGCCAGGTTGAACCGCATGGTACGGCCGGGCATGGGC 1817678
||||| ||||||| |||||| | |||||| | || | || | ||||||
Sbjct 313292 TCGGCGTTGTAGGGCGACGTGACCGACAGGTTCAGGCGAAACGTCGAGTACGGCATGACG 313351
Query 1817679 ACCACCTTGTGCATGAGCATGGAGCCCATGTGGAGTGAGGGCTGCCGGTTCATCACCACG 1817738
|| ||| | |||||| || |||| || |||||||||||||| | | | |
Sbjct 313352 CGGACGCGGTGGCCCATCATGGACTCCTTGTGCAGCGAGGGCTGCCGGTTGAAGATGATG 313411
Query 1817739 GCGTCGCCGGCGCGCAGGTGACGCTCGACTGTCCACCC 1817776
||||||| | |||||| ||||| || |||| ||
Sbjct 313412 TAGTCGCCGTCCATCAGGTGCCGCTCCACCTTCCAGCC 313449
>seq2
Length=1075658
Score = 134 bits (148), Expect = 2e-25
Identities = 334/503 (66%), Gaps = 17/503 (3%)
Strand=Plus/Minus
Query 259680 AGCACAAGGAGGTCCTCGACGCTGCCATCTGCCACGGCCGAGACTTTGGCTACTCGTACT 259739
||||||| |||| |||||| ||||||| ||| ||||||| ||| |||||
Sbjct 442632 AGCACAAAGAGGAGCTCGACTCTGCCATTGTTTACGAGAGAGACTTCAACTATCAGTACT 442573
Query 259740 TTGGTCTGGCGACCTTGCGCCGGTCCTACCTGACCAAAGTGCGCGATATTGTCGTCGAGC 259799
||||| | ||| || || || || || || || || | | ||||| |
Sbjct 442572 TTGGTTTCAAGACGCTGGAGCGATCGTATCTCCTGAAGCTGGACGGCAAGATTGTCGAAC 442513
Query 259800 GGCCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCGACGTCGACA 259859
| || ||| | ||| |||||||||| || | ||| | |||| || ||||
Sbjct 442512 GACCTCAGCACATGATCATGCGTGTTGCTGTCGGCA--TCTGGG------GA----GACA 442465
Query 259860 ATGCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCAG-TTGTTCACCTCA 259918
| | |||| ||| || | |||||| | |||||| ||| | || ||||||
Sbjct 442464 ACA---TTGAGCGCGTCCTGGAAACCTACAACCTCATGTC-CAGTAAATTCTTCACCCAC 442409
Query 259919 GCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTG 259978
|| | || || ||||| || || |||||||| | ||| ||| |||||||| ||
Sbjct 442408 GCCTCACCTACCCTCTTCAACGCGGGCACGCCTCAGTGTCAGCTTTCCTCGTGCTTCCTC 442349
Query 259979 TTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTC 260038
| |||||||||| || |||||||||||||| ||||| |||||| ||||| |
Sbjct 442348 GTCGACATGAAGGAAGACAGCATCGAGGGCATCTACGACACTCTCAAGACTTGCGCCATG 442289
Query 260039 ATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCC 260098
|| || || ||||||||| ||||| | || ||| | || || | || ||
Sbjct 442288 ATTTCTAAAATGGCCGGCGGTATCGGCCTGAACGTCCACCGCATTCGTGCTACCGGATCC 442229
Query 260099 TACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAAC 260158
||| | || |||||||||||| || |||||| | || |||||||| || || || |||
Sbjct 442228 TACATTGCCGGCACCAACGGCACCTCGAACGGCGTCGTTCCCATGCTGCGAGTCTTCAAC 442169
Query 260159 GACACGGCGCGCTACGTCGACCA 260181
|||| || | |||||||||||
Sbjct 442168 AACACTGCCAGATACGTCGACCA 442146
Score = 129 bits (142), Expect = 8e-24
Identities = 337/509 (66%), Gaps = 24/509 (5%)
Strand=Plus/Minus
Query 262913 AGCATGGCCTGCGCAACTCGTTGCTCGTGGCGCTCATGCCCACGGCCACGACGTCGCAGA 262972
|||| || | ||||||||| |||| | |||| |||||||||||| | ||||||||||
Sbjct 441237 AGCACGGGATTCGCAACTCGCTGCTGCTCGCGCCCATGCCCACGGCGTCCACGTCGCAGA 441178
Query 262973 TCCTGGGCAACACCGAGGCGTTCGAGGTCATCACGAGCAACATCTACACGCGCCGCGTGC 263032
| |||||||||| |||| |||||| | |||| |||||| ||| ||| ||||| |
Sbjct 441177 TTCTGGGCAACAACGAGTGCTTCGAGCCCTACACGTCCAACATTTACCAGCGACGCGTCC 441118
Query 263033 TCTCGGGCGACTTTACCGTGGTCAACCGCCACCTGGTCAAGCGCATGGTGGCGCGCGGCC 263092
| ||||||| || || ||||||| || ||||| | || | || |
Sbjct 441117 TGGCGGGCGAGTTCCAGGTCGTCAACCCATGGCTTCTCAAGGATCTCGTCGACATGGGTC 441058
Query 263093 TGTGGACGCCCGACTTTCGCGACCGGCTCATTGCGGCACAGGGCTCGGTGCAGGGCTTTG 263152
||||| | || | | | || ||||||| | | |||||| | ||| | |
Sbjct 441057 TGTGGTCAGACGCCATGAAGAATCGCATCATTGCCGAGAACGGCTCGATCCAGAACATCC 440998
Query 263153 ACGACGAGGAGGTGCCGCCCGATCTCAAGGCTCTCTTCAAGACCGTGTGGG-AGGTGCCC 263211
| || | || ||| | |||||||| | |||||| || |||| | | | |
Sbjct 440997 CCAAC------ATTCCCGGCGAGGTAAAGGCTCTGTACAAGACGGTCTGGGAAATTTCGC 440944
Query 263212 AAC--CGGGTGACCATTGATATGGCGGCCGACCGCGCGCCCTATGTCGACCAGAGCCAGT 263269
| | | ||| | | ||||| |||||||||| ||| | |||||||| |||||
Sbjct 440943 AGCGTCATGTG---GTGCAGATGGCCGCCGACCGCGGTGCCTTTATCGACCAGTCCCAGT 440887
Query 263270 CGCTCAACCTGTACCTCGCCGACCCGAC---GGCCGAGAGCATCACGTCGATGCAC---G 263323
| |||||| | || | ||||| || || | || ||||||||||||||| |
Sbjct 440886 CTCTCAACATTCACATGAAGGACCCAACCATGGGCAAG---ATCACGTCGATGCACTTTG 440830
Query 263324 CCTATGCGTGGCGTCGCGGCCTCAAGACTGGCATGTACTATCTGCGCACCCGGCCCGCTG 263383
|| | |||| | || |||||||||||||||||||| ||||||| | |||| |
Sbjct 440829 CC---GGGTGGAAGCTGGGTCTCAAGACTGGCATGTACTACTTGCGCACGCAAGCCGCCG 440773
Query 263384 CCAACGCCATTCAATTCACCGTCGATCAG 263412
| | |||| || |||||||| || |||
Sbjct 440772 CGGCCCCCATCCAGTTCACCGTTGACCAG 440744
>seq48
Length=244570
Score = 107 bits (118), Expect = 3e-17
Identities = 175/247 (71%), Gaps = 10/247 (4%)
Strand=Plus/Plus
Query 1600501 GTCGACGGTGACGCCGCCAAAGGGCGTGCCGTCGCCCACATAGCCCTCGCGGCAGGCCAC 1600560
||| || || ||| || |||||||||| | |||||| | |||||| | || |||
Sbjct 120140 GTCAACTGTCACGTCGGTAAAGGGCGTGGCATCGCCCTCCATGCCCTCCAGCGTGGACAC 120199
Query 1600561 CTTGCCCAGGAGGGCCTCCATCATCTTGCCCATGGTCATGCGCGACGGGATGGCGTGCGG 1600620
||||| || ||| ||| |||| | | | || ||||| |||||||| |||||||||||
Sbjct 120200 CTTGCTTAGCAGGCACTCGATCAAGTGGGCAATTGTCATTCGCGACGGAATGGCGTGCGG 120259
Query 1600621 GTTGATCACAATGTCGGGCGTGGCACCGCCGCGAGGCGACCAGGGCATGTCCTC--GGTG 1600678
|||||| | ||||| |||||| | || | | | | ||||||||||||| | |
Sbjct 120260 GTTGATGATGATGTCTGGCGTGACCCCTTCCC---GTGTAAAGGGCATGTCCTCCTGCCG 120316
Query 1600679 GAGCG-CACGCTGCCCACGGTGCCCTTTTGGCCGTGGCGCGACGACAGTTTGTCGCCCAC 1600737
| || ||| || | ||||||||||| ||||| || |||| | |||||||| |
Sbjct 120317 GTACGTCAC---ACCAATCGTGCCCTTTTGTCCGTGACGAGACGCAAACTTGTCGCCAAT 120373
Query 1600738 CT-CGGG 1600743
|| ||||
Sbjct 120374 CTGCGGG 120380
>seq1
Length=2302571
Score = 105 bits (116), Expect = 1e-16
Identities = 125/161 (78%), Gaps = 15/161 (9%)
Strand=Plus/Plus
Query 1456123 AAAAAGGCCGACTGGGCGATGAAGTGGATCAA---CAAGGAGGGCCTCGACACTTTGCCG 1456179
||||||||||||||||| || |||||| | ||||||| || | ||| |||
Sbjct 1624757 AAAAAGGCCGACTGGGCCATCCGCTGGATCCAAGACAAGGAGT--CTAG---CTTCGCCC 1624811
Query 1456180 AGCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTC--TCGGGCAGTTTCTGCG- 1456235
| || | || | ||| ||||| |||||||||||||| ||| | | ||| ||| |||
Sbjct 1624812 AACGATTGGTTGCCTTCGCCGCTGTCGAGGGCATCTTCTTCAGTGGTGCA--TTC-GCGT 1624868
Query 1456236 CCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTT 1456276
||||||||||||||||||||||||||||||||||||| |||
Sbjct 1624869 CCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGGCTT 1624909
Score = 95.1 bits (104), Expect = 2e-13
Identities = 185/267 (69%), Gaps = 5/267 (2%)
Strand=Plus/Plus
Query 1456515 CCAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGC 1456574
||||| | |||||| ||| |||||| || ||| |||| || | | ||| | ||||
Sbjct 1625011 CCAAGAA-ATCATCACCGATGCCGTCACCATTGAGCAAGATTTCCTGACGGAGGCTCTGC 1625069
Query 1456575 CGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGC 1456634
|| || || ||||||||||| ||| | || ||| || ||||| ||| || || ||
Sbjct 1625070 CGTGCGCTCTTCTCGGCATGAACTCCA-CACTGATGAAGCAATACATCGAA-TTCGTTGC 1625127
Query 1456635 CGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCC 1456694
|||||||||| | | || ||||| || ||| ||| ||| || || |||||
Sbjct 1625128 CGACCGCCTGTTGGTTGCTCTCGG-GAATGAAAAGGTGTACAAGACAGCGAATCCGTTTG 1625186
Query 1456695 CATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCG-TGGCG 1456753
| |||||| ||||| || | ||||||||||||||||| ||| || | ||| |
Sbjct 1625187 ATTTTATGGAGAATATCTCCCTGGGTGGCAAGACCAACTTTTTTGAGAAGCGAGTTGGTG 1625246
Query 1456754 AGTACGCCAAGGCCGGCGTCACCGCCA 1456780
| ||| |||||||| |||| ||||
Sbjct 1625247 AATACCAGAAGGCCGGTGTCATGGCCA 1625273
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177767893124738
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