Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09] 449 sequences; 39,397,682 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq13 141 8e-29 seq56 134 1e-26 seq67 125 6e-24 seq9 86.0 6e-12 >seq13 Length=702126 Score = 141 bits (156), Expect = 8e-29 Identities = 140/181 (77%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 35547 CCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATA 35606 |||| ||||||||||| ||||||| |||||| | || ||||||||||| || ||||| | Sbjct 289257 CCTTCTGAATGTTGTAGTCGGCCAGGGTTCGGCCATCCTCCAGCTGCTTGCCAGCAAAGA 289198 Query 35607 TCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG 35666 |||| ||||||||||| | ||| | || |||||||||| |||||| ||| | | | Sbjct 289197 TCAAACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 289138 Query 35667 CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAA 35726 | | ||||||| || || ||||| | |||||| || || ||||||| || ||||||| Sbjct 289137 CGATCGTGTCGGAGGACTCGACCTCGAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAA 289078 Query 35727 A 35727 | Sbjct 289077 A 289077 >seq56 Length=194926 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | ||||| || ||||| |||||||||||||||||| ||||| Sbjct 70080 CCACCACGCAGGCGGAGCACCAGGTGCAACGTCGACTCCTTTTGAATGTTGTAGTCGGCT 70021 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||||| | | || || ||||||||||| ||||| || | |||||||| || | |||| Sbjct 70020 AGGGTTCTCCCATCCTCAAGCTGCTTACCAGCAAAGATGAGTCGCTGCTGATCAGGAGGA 69961 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTG-CTTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 | || |||||||| | ||| ||| | ||||| | | | | || || ||| ||||| Sbjct 69960 ATGCCCTCCTTGT-CTTGAATTTTCGACTTCACATTATCAATGGTATCAGACGACTCCAC 69902 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||| | |||||| || || || |||| || || || || |||||||| Sbjct 69901 CTCGAGCGTGATGGTCTTCCCGGTCAGCGTCTTGACGAAAATCTGCAT 69854 Score = 116 bits (128), Expect = 3e-21 Identities = 143/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| |||||||| ||||| |||| || |||||||| || ||||| Sbjct 69817 CTCCTTCTGGATGTTGTAGTCGGCCAATGTTCGTCCGTCCTCGAGCTGCTTGCCGGCAAA 69758 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||||| | |||| | |||||||| ||||| ||| | || Sbjct 69757 GATAAGTCGCTGCTGGTCGGGGGGAATCCCTTCCTTGTCTTGAATCTTCGACTTGA-CGT 69699 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 || | | ||||| ||| || || |||| |||||| ||||| ||||||| || || | Sbjct 69698 TGTCAATGGTGTCTGACGACTCAACTTCCAGCGTGATTGTTTTTCCCGTCAGTGTCTTGA 69639 Query 35724 CAAATATCTGCAT 35736 |||| || ||||| Sbjct 69638 CAAAGATTTGCAT 69626 Score = 96.9 bits (106), Expect = 3e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || |||||||| ||||||| ||| || | || || ||||| ||||| ||||| Sbjct 69360 TCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCATCTTCGAGCTGTTTACCAGCAAAG 69301 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTG-CTTCAGAGT 35664 ||||| ||||||||||| | || | || |||||||| | ||| ||| | ||| | | | Sbjct 69300 ATCAAGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGT-CTTGAATTTTCGACTTGACATT 69242 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || |||||||| | ||||| || || || || | || || || Sbjct 69241 GTCGATGGTGTCAGAAGACTCCACCTCGAGGGTGATGGTCTTTCCGGTGAGGGTCTTTAC 69182 Query 35725 AAATATCTGCAT 35736 || || ||||| Sbjct 69181 GAAGATTTGCAT 69170 >seq67 Length=171618 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| || | | || |||||| || | || |||||||| || |||||||| |||||| Sbjct 155687 CCACCGCGCAGGCGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGCC 155746 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| || | || || |||||||| || ||||| || | ||||||||||| | || Sbjct 155747 AGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGGG 155806 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || |||||||||| |||||| ||| | | | | | |||||| || |||||| Sbjct 155807 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 155866 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | ||||| || || ||||| | || || || || |||||||| Sbjct 155867 TCGAGGGTGATGGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 155913 >seq9 Length=874689 Score = 86.0 bits (94), Expect = 6e-12 Identities = 170/248 (69%), Gaps = 14/248 (6%) Strand=Plus/Plus Query 41110 CCAAAACCACCACCTCCGCGTTCCGTCACGTCCAA------CGACTCGACCAGCTTTGGC 41163 ||||||||||| ||||||| ||||| | ||||| | |||||| | || | Sbjct 377109 CCAAAACCACCTGCTCCGCGCACCGTCTCCTCCAACTCCTGCACCTCGACAACCT----C 377164 Query 41164 GTGGCAATGTGGATGCGCTCGAGGATCAGCTGCGCGACACGATCACCCTTCATCACCACA 41223 | || ||| |||||| || | ||| ||||| || || ||||| |||| | | ||| || Sbjct 377165 GGGG--GTGTAGATGCGTTCAATGATGAGCTGGGCCACGCGATCGCCCTCCTTGACCTCA 377222 Query 41224 AAGTCCACGTCGTTGTTGTTCACCATCACTATGCCCACGTTGCCCG-TGTAGTCGGGATC 41282 ||||| ||| || ||| | || || || || ||||||| ||| || | || Sbjct 377223 AAGTCGGTCTCGGCGTGGTTGAACAGCAAAATCTTTAC-TTGCCCGCGGTAATCAGCGTC 377281 Query 41283 GATGACGCCAGCAGCAATGTCGATCTTGTGCTTCAACGCCAGCCCCGATCGGGGCGCGAT 41342 |||||||| ||| | ||||||| |||||| | || |||||||| ||||| || || Sbjct 377282 AATGACGCCGGCACCTGTGTCGATGAAGTGCTTGGATGCAAGCCCCGAGCGGGGGGCAAT 377341 Query 41343 CCTACCGT 41350 | |||| Sbjct 377342 GCGGCCGT 377349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450791069920920